Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10960 903 / 0 ATAZG1 AZA-guanine resistant1 (.1) AT5G50300 497 / 1e-171 ATAZG2 ARABIDOPSIS THALIANA AZA-GUANINE RESISTANT2, Xanthine/uracil permease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G133800 [exp] 837 / 0 AT3G10960 847 / 0.0 AZA-guanine resistant1 (.1) Potri.015G090000 [exp] 519 / 5e-180 AT5G50300 736 / 0.0 ARABIDOPSIS THALIANA AZA-GUANINE RESISTANT2, Xanthine/uracil permease family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030548 [exp] 847 / 0 AT3G10960 881 / 0.0 AZA-guanine resistant1 (.1) Lus10012895 [exp] 845 / 0 AT3G10960 873 / 0.0 AZA-guanine resistant1 (.1) Lus10025246 [exp] 757 / 0 AT3G10960 780 / 0.0 AZA-guanine resistant1 (.1) Lus10009102 [exp] 751 / 0 AT3G10960 780 / 0.0 AZA-guanine resistant1 (.1) Lus10040894 [exp] 493 / 4e-170 AT5G50300 691 / 0.0 ARABIDOPSIS THALIANA AZA-GUANINE RESISTANT2, Xanthine/uracil permease family protein (.1) Lus10034287 [exp] 59 / 1e-10 AT5G50300 91 / 1e-22 ARABIDOPSIS THALIANA AZA-GUANINE RESISTANT2, Xanthine/uracil permease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [poplar] [flax] APC PF00860 [poplar] [flax] Xan_ur_permease Permease family
Representative CDS sequence Show only first row Show all	>Potri.013G083300.1 pacid=42811231 polypeptide=Potri.013G083300.1.p locus=Potri.013G083300 ID=Potri.013G083300.1.v4.1 annot-version=v4.1 ATGGAGATTGGATCTTCTTCACCTCCACAAAATCAAAAGCCTTTAACAAGGCTGAACAACTATGTTGCCAGAACCCGAGTTGGTAAGAGATTCAAACTTG CTGAGCGTAACTCAACCTTCACAACCGAGTTACGTGCTGGCACCGCCACCTTCCTTACCATGGCATACATCTTGGCAGTCAACGCTTCCATCCTCACCGA CAGCGGCGGTACATGCAGCGTTTCTGATTGTATCCCACTATGTTCGGACCCTACAGTATCAGTTTCCAACTGCACCGGGTCAACTGGTCTTCGAGTAATC CAACCCGATGCGTCATGCAAATTCGACCCAGTTAACCCGGGATACTCTTCTTGTTTAGAGAAGATACGTAAGGACCTGATAGTAGCCACTGTCGCATCTT CTCTTATTGGCTGTTTAATCATGGGTGCATTTGCCAATCTCCCATTGGCTCTGGCTCCGGGTATGGGCACTAATGCTTATTTTGCTTACACGGTTGTCGG GTTTCACGGGTCGGGTAATGTCTCATATAAGAGTGCATTAGCTGCCGTGTTTATTGAAGGCGTGATTTTTTTAGGCATTTCAGCAATTGGGTTACGTGCG AAATTGGCTAAATTAGTCCCTAAACCGGTTCGGATCAGCTCCTCTGCTGGTATCGGACTTTTTCTGGCCTTCATCGGGTTACAGAATGGTCAAGGAATCG GTCTAGTTGGGTACAGTTCATCTACTCTAGTAACGCTTGCAGGGTGTCCAAGTTCATCACGGGCGTCGTTAGCTCCTGTTATGACGTTAGCTAACGGGAC TGTGAGTTTGATCCCGGGCGGTACCGTTTCCGGCGGTATCTTTTGCCTCCGGGACAGGATGGAGAGCCCTACTCTATGGCTTGGCGTGGTGGGATTCGTT ATAATCGCTTATTGCCTAGTGAAAAATGTTAAAGGGGCTATGATTTACGGGATTGTTTTTGTAACGGCCATTTCATGGTTCCGTGACACCAAGGTAACGG TGTTTCCTAACACGGAAGCAGGTGATGCCGCACATGAATATTTCAAGAAAGTTGTTGATGTACATGTTATTGAAAGCACAGCTGGGGCGTTGAGTTTTAA GAGCATTGGCAAAGGTTATTTTTGGGAGGCTCTGATCACTTTCTTATACGTGGATATATTGGATACTACTGGCACCTTGTACTCGATGGCTCGGTTCGCT GGGTTTTCAGATCAAAATGGTGATTTCGAGGGCCAGTACTTCGCCTTCATGTCGGACGCCTCGTCAATTGTCGTCGGGTCATTGCTGGGCACGTCACCGG TGACGGCATTCATCGAATCGTCAACAGGAATTAGGGAGGGCGGGCGGACGGGTCTGACCGCTCTAACCGTGGCAGGGTATTTCTTCTTGGCCTTTTTCTT CACGCCGTTACTGGCATCCATACCAGCATGGGCAGTGGGCCCACCGTTGATATTAGTGGGAGTTCTGATGATGAAATCAGTGGTCGAGGTAGAGTGGAAT GATATGAGGCAAGCCATCCCAGCCTTTATGACGTTGATTTTAATGCCTTTGACCTACTCCATTGCATACGGCTTGATCGGAGGGATCGGGACTTACATGG TCTTGCACTTGTGGGACTGGGGCGATGAGTTCTTGGTAAAGCTTGGCGTTATAAACAGGAGCAATGGTGGTGGCGGTGGGGCCAATGGGGTGCATGACCA CCAGGATGGAAGCGTGAAATCGCCTGGAATTCATGTCTAG
AA sequence Show only first row Show all	>Potri.013G083300.1 pacid=42811231 polypeptide=Potri.013G083300.1.p locus=Potri.013G083300 ID=Potri.013G083300.1.v4.1 annot-version=v4.1 MEIGSSSPPQNQKPLTRLNNYVARTRVGKRFKLAERNSTFTTELRAGTATFLTMAYILAVNASILTDSGGTCSVSDCIPLCSDPTVSVSNCTGSTGLRVI QPDASCKFDPVNPGYSSCLEKIRKDLIVATVASSLIGCLIMGAFANLPLALAPGMGTNAYFAYTVVGFHGSGNVSYKSALAAVFIEGVIFLGISAIGLRA KLAKLVPKPVRISSSAGIGLFLAFIGLQNGQGIGLVGYSSSTLVTLAGCPSSSRASLAPVMTLANGTVSLIPGGTVSGGIFCLRDRMESPTLWLGVVGFV IIAYCLVKNVKGAMIYGIVFVTAISWFRDTKVTVFPNTEAGDAAHEYFKKVVDVHVIESTAGALSFKSIGKGYFWEALITFLYVDILDTTGTLYSMARFA GFSDQNGDFEGQYFAFMSDASSIVVGSLLGTSPVTAFIESSTGIREGGRTGLTALTVAGYFFLAFFFTPLLASIPAWAVGPPLILVGVLMMKSVVEVEWN DMRQAIPAFMTLILMPLTYSIAYGLIGGIGTYMVLHLWDWGDEFLVKLGVINRSNGGGGGANGVHDHQDGSVKSPGIHV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G10960		ATAZG1	AZA-guanine resistant1 (.1)		Potri.013G083300 [exp]	0	1
AT5G63970			Copine (Calcium-dependent phos...		Potri.007G103700 [exp]	4.89	0.8246
AT4G36830		HOS3-1	GNS1/SUR4 membrane protein fam...		Potri.007G031500 [exp]	6.00	0.7991
AT1G43700	bZIP	SUE3, AtbZIP51,...	sulphate utilization efficienc...		Potri.002G069500 [exp]	8.36	0.8453
AT1G72470		ATEXO70D1	exocyst subunit exo70 family p...		Potri.003G068700 [exp]	10.00	0.8086
AT5G04740		ACR12	ACT domain repeats 12, ACT dom...		Potri.008G020700 [exp]	12.16	0.7815
AT2G28710	C2H2ZnF		C2H2-type zinc finger family p...		Potri.008G051200 [exp]	12.32	0.8128
AT4G28910		NINJA	novel interactor of JAZ (.1.2....		Potri.018G085100 [exp]	12.40	0.8160
AT1G34750			Protein phosphatase 2C family ...		Potri.002G097200 [exp]	13.41	0.8199
AT4G02940			oxidoreductase, 2OG-Fe(II) oxy...		Potri.014G137700 [exp]	13.96	0.8158
AT1G64950		CYP89A5	"cytochrome P450, family 89, s...		Potri.007G087950 [exp]	15.00	0.8295

Compare expression of checked genes

Potri.013G083300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.