Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-KT2.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40540 1225 / 0 ATKUP2, ATKT2, TRK2, SHY3, KT2 potassium transporter 2 (.1.2) AT5G14880 932 / 0 Potassium transporter family protein (.1) AT1G70300 890 / 0 KUP6 K+ uptake permease 6, K+ uptake permease 6 (.1) AT3G02050 715 / 0 ATKT4, ATKUP3, KUP3 K+ uptake transporter 3, ARABIDOPSIS THALIANA POTASSIUM TRANSPORTER 4, K+ uptake transporter 3 (.1) AT2G30070 709 / 0 ATKUP1, ATKT1P, ATKT1 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1) AT4G23640 671 / 0 ATKT3, KUP4, TRH1 TINY ROOT HAIR 1, Potassium transporter family protein (.1) AT1G60160 613 / 0 Potassium transporter family protein (.1) AT4G13420 601 / 0 HAK5, ATHAK5 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) AT2G35060 601 / 0 KUP11 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) AT1G31120 593 / 0 KUP10 K+ uptake permease 10, K+ uptake permease 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G056500 [exp] 1406 / 0 AT2G40540 1272 / 0.0 potassium transporter 2 (.1.2) Potri.010G094300 [exp] 971 / 0 AT1G70300 1228 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Potri.008G147400 [exp] 951 / 0 AT1G70300 1221 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Potri.014G144900 [exp] 800 / 0 AT3G02050 1175 / 0.0 K+ uptake transporter 3, ARABIDOPSIS THALIANA POTASSIUM TRANSPORTER 4, K+ uptake transporter 3 (.1) Potri.002G237500 [exp] 781 / 0 AT3G02050 1179 / 0.0 K+ uptake transporter 3, ARABIDOPSIS THALIANA POTASSIUM TRANSPORTER 4, K+ uptake transporter 3 (.1) Potri.009G073500 [exp] 734 / 0 AT2G30070 1092 / 0.0 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1) Potri.003G133900 [exp] 700 / 0 AT4G23640 947 / 0.0 TINY ROOT HAIR 1, Potassium transporter family protein (.1) Potri.005G095900 [exp] 688 / 0 AT2G30070 769 / 0.0 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1) Potri.012G043501 [exp] 680 / 0 AT2G40540 726 / 0.0 potassium transporter 2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030539 [exp] 1209 / 0 AT2G40540 1245 / 0.0 potassium transporter 2 (.1.2) Lus10034215 [exp] 1187 / 0 AT2G40540 1239 / 0.0 potassium transporter 2 (.1.2) Lus10030857 [exp] 957 / 0 AT1G70300 1249 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Lus10030632 [exp] 949 / 0 AT1G70300 1238 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Lus10012992 [exp] 873 / 0 AT1G70300 1188 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Lus10014531 [exp] 771 / 0 AT5G14880 1098 / 0.0 Potassium transporter family protein (.1) Lus10018324 [exp] 614 / 0 AT2G35060 1212 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) Lus10013304 [exp] 594 / 0 AT4G13420 950 / 0.0 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) Lus10012993 [exp] 592 / 0 AT1G60160 1237 / 0.0 Potassium transporter family protein (.1) Lus10038361 [exp] 582 / 0 AT2G35060 1164 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [poplar] [flax] APC PF02705 [poplar] [flax] K_trans K+ potassium transporter
Representative CDS sequence Show only first row Show all	>Potri.013G083400.3 pacid=42810770 polypeptide=Potri.013G083400.3.p locus=Potri.013G083400 ID=Potri.013G083400.3.v4.1 annot-version=v4.1 ATGGATCTTGGGCATGGCAAGTGTTGGGATACTTCGAAGAAGGATTCTTGGAAGACATTGTTGCTTTTGGCTTATCAGAGCCTTGGAGTAGTATATGGTG ACTTGAGCACTTCCCCTCTCTATGTTTACAAGAGCACATTCGCAGAAGACATTCAACATTCAGATACCAATGAAGAGATTTTTGGTGTTCTATCTTTTGT TTTCTGGACCCTCACTCTGGTCCCCTTATTCAAGTATGTCTTTGTGGTCCTTCGAGCAGATGACAATGGAGAGGGTGGTACTTTTGCATTGTATTCATTG ATATGCCGGCATGCAAAGGTTAGCCTTCTGCCCAATAGACAGGTTGCAGATGAATCACTCTCCACATACAAACTAGAGAACCCTCCAGAGAAGGACAGCT CAAGGGTTAAAATGTACCTTGAGAAGCACAAGGCCTTGCACACTGCATTGCTAATCTTGGTTCTTCTTGGCACTTGCATGGTAATTGGAGATGGACTGCT CACTCCAGCAATTTCTGTCTTCACAGCAGTGTCTGGTCTCGAGCTTTCCATGTCCAGTAACCATCATCAATATGCAGTAGTTCCAATCACTTGCTTCATC TTGGTGTGCCTTTTTACACTTCAACACTATGGCACACATCGGGTGGGATTTCTCTTTGCACCAGTTGTCTTGGCATGGCTGCTATGCATAAGTGCCCTTG GTCTGTATAATATAATCCACTGGAACCCACACGTCTATCAAGCTCTTTCTCCATATTACATGTTCAAGTTCATGAAGAAAACAAAGAAAGGCGGGTGGAT GTCTTTGGGTGGAATATTGTTGTGCATAACAGGCTCCGAGGCAATGTTTGCTGATCTTGGCCACTTCTCGTATACTGCAATTCAGATTGCATTCACCTTT CTGGTTTATCCAGCCCTTATATTGGCATATATGGGGCAAGCTGCTTATTTGTCACAGCATCATGACAACACAAACCATATTGGCTTTTATATCTCGGTCC CAGGGAAGTTAAGGATACCTGTCCTCATAATAGCTATTCTTGCTTCTGTTGTGGGGAGCCAAGCAATCATCAGTGGAACATTCTCTATCATAAACCAGAG CCAGTCGCTTGGCTGTTTCCCAAGAGTGAAGGTTGTTCACACTTCTGACAAGATACACGGCCAGATTTATATCCCTGAGATCAATTGGATGCTCATGATC CTCTGTATTGCTGTGACAATTGGATTTAGAGACACGAAGCACATGGGAAATGCATCAGGGTTAGCAGTGATGACAGTGATGCTAGTGACCACATGCCTTA CTTCCCTTGTTATCATTCTTTGTTGGCACAAACCCCCTATTCTAGCATTATCCTTTCTACTTTTCTTCGGCTCCATTGAGTTGCTTTACTTCTCAGCTTC ACTAACCAAATTCACCGAGGGTGCATGGCTCCCCATCCTTCTAGCCCTCATTTTGATGACCATCATGTTTGTTTGGCATTATGCCACCATTAAGAAATAT GAATTTGATCTACACAACAAGGTATCACTAGAATGGCTCTTAGCCTTAGGTCCAAGCTTGGGGATTGCTAGAGTCCCTGGCATTGGCTTAGTTTTCACTG ATCTCACCTCTGGCATCCCTGCTAATTTCTCACGCTTTGTCACCAACCTCCCTGCCTTCCATCGTGTCCTTGTCTTTGTGTGCGTAAAATCAGTGCCTGT GCCTTTTGTGCCCCCTGCGGAGAGGTATCTTGTTGGTCGTGTGGGTCCTCCAGGTCATCGGTCTTACAGGTGCATTGTCCGTTATGGATATCGTGATGTG CACCAGGATGTTGATTCTTTTGAATCAGAGCTCATTGCTCGACTGGCTGATTTCATCAACTATGATTGGCATCGAAGTCATGGGACTAACTCATTTCCTG AGGACGATGCATCTCAATCCAATGAATCATCAAATGAGTATAGCTTGGCAGTGATTGGAACTGTCGCTTTCTCAGGCATACCAGCTTATGAGATTGAGGA GAGTGTGCAGCTAGCAAGTATATCTGGTGGTTTCTCTACAGTAGAAAGCGTGACAGATGTTATTGAAATGGAACCGGTTGGGGTAGTAGAAAGAAGAGTG AGGTTTGCTATTGATGATGAGTCCGGATCCCATTCACCAGCTGATATGCATTTGCAGTTACAAGAAGAGCTAGAAGATTTGTTATCAGGCCAACAAGCTG GTACTGCATTTATACTTGGGCACTCGCATGTTAAAGCAAAGCAAGGATCATCACTTCTGAAGAGATTGGCTCTTAATTTTGGGTACAATTTTCTCAGGCG GAACTGCCGAGGGCCAGATGTGGCACTCAAGGTTCCGCCAGTGTCTCTTCTAGAGGTCGGTATGGTTTATGTTATGTAA
AA sequence Show only first row Show all	>Potri.013G083400.3 pacid=42810770 polypeptide=Potri.013G083400.3.p locus=Potri.013G083400 ID=Potri.013G083400.3.v4.1 annot-version=v4.1 MDLGHGKCWDTSKKDSWKTLLLLAYQSLGVVYGDLSTSPLYVYKSTFAEDIQHSDTNEEIFGVLSFVFWTLTLVPLFKYVFVVLRADDNGEGGTFALYSL ICRHAKVSLLPNRQVADESLSTYKLENPPEKDSSRVKMYLEKHKALHTALLILVLLGTCMVIGDGLLTPAISVFTAVSGLELSMSSNHHQYAVVPITCFI LVCLFTLQHYGTHRVGFLFAPVVLAWLLCISALGLYNIIHWNPHVYQALSPYYMFKFMKKTKKGGWMSLGGILLCITGSEAMFADLGHFSYTAIQIAFTF LVYPALILAYMGQAAYLSQHHDNTNHIGFYISVPGKLRIPVLIIAILASVVGSQAIISGTFSIINQSQSLGCFPRVKVVHTSDKIHGQIYIPEINWMLMI LCIAVTIGFRDTKHMGNASGLAVMTVMLVTTCLTSLVIILCWHKPPILALSFLLFFGSIELLYFSASLTKFTEGAWLPILLALILMTIMFVWHYATIKKY EFDLHNKVSLEWLLALGPSLGIARVPGIGLVFTDLTSGIPANFSRFVTNLPAFHRVLVFVCVKSVPVPFVPPAERYLVGRVGPPGHRSYRCIVRYGYRDV HQDVDSFESELIARLADFINYDWHRSHGTNSFPEDDASQSNESSNEYSLAVIGTVAFSGIPAYEIEESVQLASISGGFSTVESVTDVIEMEPVGVVERRV RFAIDDESGSHSPADMHLQLQEELEDLLSGQQAGTAFILGHSHVKAKQGSSLLKRLALNFGYNFLRRNCRGPDVALKVPPVSLLEVGMVYVM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G40540		ATKUP2, ATKT2, ...	potassium transporter 2 (.1.2)		Potri.013G083400 [exp]	0	1	Pt-KT2.2
AT3G01810			unknown protein		Potri.001G333200 [exp]	1.73	0.9369
AT1G17120		CAT8	cationic amino acid transporte...		Potri.001G378500 [exp]	6.32	0.9009	Pt-CAT8.3
AT5G45290			RING/U-box superfamily protein...		Potri.001G127100 [exp]	6.63	0.9102
AT3G47570			Leucine-rich repeat protein ki...		Potri.008G034000 [exp]	6.92	0.8961
AT3G51780		ATBAG4	BCL-2-associated athanogene 4 ...		Potri.009G074300 [exp]	7.48	0.9067
AT3G20860		ATNEK5	NIMA-related kinase 5 (.1)		Potri.006G056300 [exp]	8.36	0.9096
AT2G32850			Protein kinase superfamily pro...		Potri.001G228100 [exp]	8.48	0.9075
AT5G44030		IRX5, NWS2, CES...	IRREGULAR XYLEM 5, cellulose s...		Potri.002G257900 [exp]	8.71	0.9208
AT5G15710			Galactose oxidase/kelch repeat...		Potri.017G102300 [exp]	11.87	0.8221
AT3G23200			Uncharacterised protein family...		Potri.008G165500 [exp]	12.00	0.8753

Compare expression of checked genes

Potri.013G083400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.