Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G33360 742 / 0 ATP-dependent Clp protease (.1) AT5G53350 658 / 0 CLPX CLP protease regulatory subunit X (.1) AT5G49840 580 / 0 ATP-dependent Clp protease (.1) AT3G02450 48 / 2e-05 cell division protein ftsH, putative (.1) AT1G79560 48 / 3e-05 EMB36, EMB156, EMB1047, FTSH12 EMBRYO DEFECTIVE 36, EMBRYO DEFECTIVE 156, EMBRYO DEFECTIVE 1047, FTSH protease 12 (.1) AT5G19990 45 / 0.0001 ATSUG1, RPT6A regulatory particle triple-A ATPase 6A (.1) AT5G20000 45 / 0.0001 RPT6A AAA-type ATPase family protein (.1) AT1G64110 45 / 0.0002 DAA1 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) AT5G52882 45 / 0.0003 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G09100 44 / 0.0003 RPT5B 26S proteasome AAA-ATPase subunit RPT5B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G012900 [exp] 649 / 0 AT5G53350 675 / 0.0 CLP protease regulatory subunit X (.1) Potri.012G015600 [exp] 629 / 0 AT5G53350 709 / 0.0 CLP protease regulatory subunit X (.1) Potri.004G229400 [exp] 617 / 0 AT5G49840 701 / 0.0 ATP-dependent Clp protease (.1) Potri.004G106500 [exp] 47 / 3e-05 AT3G02450 657 / 0.0 cell division protein ftsH, putative (.1) Potri.013G151600 [exp] 47 / 7e-05 AT3G01610 747 / 0.0 embryo defective 1354, cell division cycle 48C (.1) Potri.005G059700 [exp] 46 / 0.0001 AT5G64580 1349 / 0.0 EMBRYO DEFECTIVE 3144, AAA-type ATPase family protein (.1) Potri.010G171300 [exp] 46 / 0.0001 AT1G79560 1563 / 0.0 EMBRYO DEFECTIVE 36, EMBRYO DEFECTIVE 156, EMBRYO DEFECTIVE 1047, FTSH protease 12 (.1) Potri.008G144100 [exp] 45 / 0.0001 AT5G19990 741 / 0.0 regulatory particle triple-A ATPase 6A (.1) Potri.010G098300 [exp] 45 / 0.0001 AT5G19990 768 / 0.0 regulatory particle triple-A ATPase 6A (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040561 [exp] 758 / 0 AT1G33360 721 / 0.0 ATP-dependent Clp protease (.1) Lus10000933 [exp] 756 / 0 AT1G33360 711 / 0.0 ATP-dependent Clp protease (.1) Lus10036701 [exp] 620 / 0 AT5G53350 706 / 0.0 CLP protease regulatory subunit X (.1) Lus10037222 [exp] 587 / 0 AT5G53350 651 / 0.0 CLP protease regulatory subunit X (.1) Lus10010691 [exp] 533 / 0 AT5G49840 635 / 0.0 ATP-dependent Clp protease (.1) Lus10038001 [exp] 49 / 9e-06 AT2G45500 679 / 0.0 AAA-type ATPase family protein (.1.2) Lus10009233 [exp] 49 / 1e-05 AT2G45500 670 / 0.0 AAA-type ATPase family protein (.1.2) Lus10031169 [exp] 47 / 5e-05 AT1G79560 1356 / 0.0 EMBRYO DEFECTIVE 36, EMBRYO DEFECTIVE 156, EMBRYO DEFECTIVE 1047, FTSH protease 12 (.1) Lus10031745 [exp] 47 / 6e-05 AT1G79560 1357 / 0.0 EMBRYO DEFECTIVE 36, EMBRYO DEFECTIVE 156, EMBRYO DEFECTIVE 1047, FTSH protease 12 (.1) Lus10003049 [exp] 47 / 7e-05 AT3G02450 685 / 0.0 cell division protein ftsH, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00004 [poplar] [flax] AAA ATPase family associated with various cellular activities (AAA) CL0671 [poplar] [flax] AAA_lid PF10431 [poplar] [flax] ClpB_D2-small C-terminal, D2-small domain, of ClpB protein
Representative CDS sequence Show only first row Show all	>Potri.013G089500.7 pacid=42810698 polypeptide=Potri.013G089500.7.p locus=Potri.013G089500 ID=Potri.013G089500.7.v4.1 annot-version=v4.1 ATGTCTGGAACTAGAATGTTGTGGAGATGCAGGAAACTCAAGGACGCAACGAATCCTCTGGTACTCTCTTCCCGTTTCGAATCCCCGGTCCGTTTCTCAA GAGGAATCTCCACGCACCTGAACTACTTAAACATCGGGTGTAACCGCCGGAAGGAATCATTGATCGGAATCCAAGAGCGCTACAAGTGGGAGAATTCCAA GGACGACAGCAATGTTCGGAAAATTAGGGCAGAAGCGAATTGTCCGAGGTGCTCTAAACACATGGATGTGCTCTTCTCCAATCGGAGTTTCGTATTTAGT AATAATTCTAATCTTGATCATCATCATCATCATCATTTGAGTCGCAATAATGATACTGCTAATAATAATACTAATAATACTACAACTGCTGATACTGGCG CTTGTAATGGAAATGGGCATAATAATAATTATCAGGCTGTGAATTTCTGTCCTAATTGTAAGACAGCCTATTATTTTAGGCCGGATAAGATTGCGCCGTT ACAAGGCAGTTTTGTTGAGATTGGTAGGATTAGTAATAAGGGGAATGGGAAAAATGGGAATAAGGGAGGTAAGGAAGGGAGTAATGGTGGTGAAGAGGGG GCGGATTATGCCAATGTTACTAATACTATTAATAATAGGTTAAGGGTGTCGTTCTGGGAGACGTTGAGGTCTTATGGAGGGGATCCGCCGGAGAATTGGC CTCAGGGGATTCCTCCTCCGCCACCCCCGGGTGGGAATGGGTTGGCTGTGCATACGCCTCCTGGTCCGCCGTTTGCTCCGGGGGTTAGCGTGGTTAGGGC TTTTAAGCCAGGTGGAGAAAAGAGTGGAGGTGGTGGTGGGAATGGAGGTGGTGAGAAGAATGGTGCTGGATGGGGTGGGTCAAATTTGGGGAAGGAATTG CCGACGCCAAAGGAGATTTGCAAAGGTCTTGATAAGTTTGTTATTGGACAAGACAGAGCAAAAAAGGTGCTTTCTGTGGCTGTCTACAACCATTATAAGA GGGTTTACCATTCCTCCTTGCGGAAAGGGCCAGGAGCAGAATCAGGAACTTTGGAGGCTATAGATGATGAAGACAATGTGGAACTGGAAAAAAGCAATGT ACTCTTGATGGGCCCAACTGGCTCAGGGAAGACATTGTTGGCAAAAACACTAGCACGCTTTGTGAATGTGCCATTCGTGATTGCTGATGCAACAACACTA ACCCAGGCTGGTTATGTTGGTGAAGATGTTGAATCAATATTGTATAAATTACTCTCGGCAGCTGAATTTAATGTGCAAGCAGCTCAACAAGGAATGGTCT ACATTGATGAAGTTGATAAGATAACAAAGAAGGCTGAGAGCTTAAACATAAGCAGGGATGTTTCTGGTGAGGGTGTCCAACAGGCATTATTGAAAATGCT GGAAGGAACTATAGTAAATGTTCCTGAGAAGGGGGCAAGGAAGCATCCTCGGGGTGATAACATACAGATAGATACAAAAAATATCCTCTTTATATGTGGT GGAGCATTTGTTGATCTTGAAAAGACCATTTCAGAGAGACGACAAGATTCATCAATTGGATTTGGAGCACCTGTGCGTGCTAATATGAGAGCAGGTGGAG TAACCAATGCTGCAATCACTTCATCTTTGCTAGAATCTGTTGAGAGTGCTGATCTTATTGCTTATGGCCTTATACCGGAGTTTATTGGACGCTTTCCAAT ATTAGTTAGTTTGGCAGCTCTAACTGAGGATCAACTTGTTAAGGTCCTCATGGAACCGAGAAATGCCCTTGGTAAACAGTATAAGAAGTTGTTTAGCATG AATAACGTGAAGCTACATTTTACTGATAAGGCACTAAGACTAATTGCGAAAAAGGCAATGGCTAAGAATACTGGTGCCAGGGGTTTAAGATCCATACTTG AAAGCATTCTAACTGAAGCCATGTATGAGATCCCAGACATCAAAACAGGAAGTGATAGAGTAGATGCTGTTGTAATTGATGAGGAGTCTGTAGGTTCAGT GCATGCTCCTGGAAGTGGTGGGAAAATCCTGCGTGGAGATGGTGCATTGGAGCATTACCTAGCAGAATATAAGGACACTGTTGAGGCAGCTGATGGGGAG TTGCAGGACGCTGAATCAGAGGTTTCATCAAGAGCAATGAGCATGTAG
AA sequence Show only first row Show all	>Potri.013G089500.7 pacid=42810698 polypeptide=Potri.013G089500.7.p locus=Potri.013G089500 ID=Potri.013G089500.7.v4.1 annot-version=v4.1 MSGTRMLWRCRKLKDATNPLVLSSRFESPVRFSRGISTHLNYLNIGCNRRKESLIGIQERYKWENSKDDSNVRKIRAEANCPRCSKHMDVLFSNRSFVFS NNSNLDHHHHHHLSRNNDTANNNTNNTTTADTGACNGNGHNNNYQAVNFCPNCKTAYYFRPDKIAPLQGSFVEIGRISNKGNGKNGNKGGKEGSNGGEEG ADYANVTNTINNRLRVSFWETLRSYGGDPPENWPQGIPPPPPPGGNGLAVHTPPGPPFAPGVSVVRAFKPGGEKSGGGGGNGGGEKNGAGWGGSNLGKEL PTPKEICKGLDKFVIGQDRAKKVLSVAVYNHYKRVYHSSLRKGPGAESGTLEAIDDEDNVELEKSNVLLMGPTGSGKTLLAKTLARFVNVPFVIADATTL TQAGYVGEDVESILYKLLSAAEFNVQAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDNIQIDTKNILFICG GAFVDLEKTISERRQDSSIGFGAPVRANMRAGGVTNAAITSSLLESVESADLIAYGLIPEFIGRFPILVSLAALTEDQLVKVLMEPRNALGKQYKKLFSM NNVKLHFTDKALRLIAKKAMAKNTGARGLRSILESILTEAMYEIPDIKTGSDRVDAVVIDEESVGSVHAPGSGGKILRGDGALEHYLAEYKDTVEAADGE LQDAESEVSSRAMSM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G33360			ATP-dependent Clp protease (.1...		Potri.013G089500 [exp]	0	1
AT1G63490			transcription factor jumonji (...		Potri.003G126600 [exp]	7.07	0.7471
AT1G70060		SNL4	SIN3-like 4 (.1)		Potri.010G038700 [exp]	11.35	0.7160
AT5G53930			unknown protein		Potri.011G115900 [exp]	12.64	0.7317
AT1G07110		FKFBP, ATF2KP, ...	"fructose-2,6-bisphosphatase",...		Potri.009G073800 [exp]	18.76	0.6887
AT5G44180	HD		Homeodomain-like transcription...		Potri.007G135500 [exp]	19.74	0.6973
AT3G05670			RING/U-box protein (.1)		Potri.005G021000 [exp]	25.88	0.6974
AT2G13370		CHR5	chromatin remodeling 5 (.1)		Potri.001G253400 [exp]	26.38	0.7014
AT5G11700			unknown protein		Potri.018G058300 [exp]	26.49	0.6880
AT2G44430			DNA-binding bromodomain-contai...		Potri.009G023100 [exp]	26.55	0.6795	BRD908
AT5G58470		TAF15b	TBP-associated factor 15B (.1....		Potri.009G076600 [exp]	27.74	0.6553

Compare expression of checked genes

Potri.013G089500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.