Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17680 570 / 0 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G36930 550 / 5e-176 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT4G12010 496 / 2e-155 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G18360 449 / 3e-141 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G44510 449 / 3e-138 TAO1 target of AVRB operation1 (.1) AT5G49140 432 / 4e-134 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT2G16870 436 / 5e-134 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G41750 431 / 9e-133 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G27170 438 / 1e-132 transmembrane receptors;ATP binding (.1.2) AT1G63880 429 / 2e-132 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G098000 [exp] 1920 / 0 AT5G17680 575 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.013G098550 [exp] 1882 / 0 AT5G17680 593 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.013G097300 [exp] 1468 / 0 AT5G17680 598 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.017G104301 [exp] 1459 / 0 AT5G17680 566 / 1e-178 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.017G103701 [exp] 1439 / 0 AT5G17680 544 / 5e-170 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.017G105201 [exp] 1424 / 0 AT4G12010 549 / 4e-174 Disease resistance protein (TIR-NBS-LRR class) family (.1) Potri.017G104901 [exp] 1422 / 0 AT5G17680 536 / 2e-167 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G069200 [exp] 930 / 0 AT5G17680 590 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.008G220200 [exp] 717 / 0 AT5G36930 560 / 3e-180 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011104 [exp] 743 / 0 AT5G17680 574 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10003749 [exp] 693 / 0 AT5G17680 517 / 5e-161 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10030839 [exp] 605 / 0 AT4G12010 552 / 7e-176 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10029722 [exp] 585 / 0 AT5G17680 608 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10041060 [exp] 577 / 0 AT5G17680 641 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10018616 [exp] 557 / 3e-177 AT5G36930 578 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10039850 [exp] 547 / 2e-174 AT5G36930 573 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10005171 [exp] 494 / 2e-155 AT1G27170 576 / 0.0 transmembrane receptors;ATP binding (.1.2) Lus10019708 [exp] 492 / 8e-151 AT5G17680 495 / 1e-150 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10005588 [exp] 460 / 2e-142 AT5G17680 499 / 2e-156 disease resistance protein (TIR-NBS-LRR class), putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain CL0173 [poplar] [flax] STIR PF13676 [poplar] [flax] TIR_2 TIR domain
Representative CDS sequence Show only first row Show all	>Potri.013G097000.3 pacid=42812624 polypeptide=Potri.013G097000.3.p locus=Potri.013G097000 ID=Potri.013G097000.3.v4.1 annot-version=v4.1 ATGGCCTCATCCAGCATGCAGAAAGCAGCCTCATCTTCTTATTCTGCTCCCCAATGGATGTATGATGTCTTCCTTAGTTTTAGAGGCAAAGACACACGGA ATAACTTTACTAGCCATCTATATTCTAATTTGGTACAAAGAGGCATCGACGTATACATGGATGATAGGGGGCTAGAGAGAGGAAAGACCATCGAACCTGC TCTCTGGAAGGCCATCGAAGATTCAAGATTTTCAATCGTTGTGTTTTCAAGAGATTACGCGTCTTCACCATGGTGCTTAGATGAGCTTGTCAAGATTGTT CAGTGCATGAAAGAGATGGGGCACACTGTTCTACCAGTTTTTTATGATGTGGATCCATCAGAGGTAGCCGATCAGAAAGGGAATTACAAGAAGGCTTTCA TTGAGCATAAGGAAAAGCTCTCGGAAAATCTGGACAGGGTAAAATGCTGGAGTGATTGTCTCTCCACAGTGGCCAATCTATCTGGCTGGGATGTACGGAA TAGCGATGAGTCACAATCAATTAAAAAGATTGCTGAATATATACAGTGCAAACTAAGCTTCACTTTGCAAACAATTAGCAAAAATCTAGTTGGAATAGAT TCTCGTCTGAAGGTATTGAATGAATATATAGACGAACAAGCAACTGATACTCTCTTTATAGGGATATGTGGAATGGGTGGCATGGGAAAGACAACTGTTG CAAGAGTCATGTATGATAGGATTCGTTGGCAATTCCAAGGCAGCTGCTTCTTAGCAAATGTGAGAGAAGTTTTTGCAGAGAAAGATGGACGGTGTCGTTT ACAGGAACAACTTCTTTCGGAAATCTCAATGGAGCTTCCCACTGCACGGGATTCTTCAAGAAGGATTGATTTGATAAAGCGCAGGCTGCGGCTTAAAAAG GTTCTTCTTATTCTGGATGATGTAGATGATGAAGAACAATTACAGATGTTGGCTGCAGAGCATGGATCGTTTGGTCCAGGGAGCCGGATTATCATAACGA GCAGAAATAAACATGTGCTGGATAGCCATGGTGTTACTAGAATATACGAGGCTGAGAAATTAAATGATAAAGATGCTCTTATCTTATTTAGCTGGAAAGC TTTCAAAAGAGACCAGCCTGCCGAAGATTTATCGGAACTGTCCAAGCAAGTTGTGGGTTATGCTAATGGCCTTCCACTAGCTCTTGAAGTCATAGGTTCG TTCTTGCATAAAAGAGGTCTGCGTGAATGGAAAAGTGCAATTGATAGAATGAATGACATTCCTGACAGGAAGATTATTGATGTTCTTCGCATTAGTTTTG ATGGCCTCCATGAATTAGAGAAGAAAATATTTTTAGATATCGCTTGCTTCTTGAAGGGGATGAAAAAGGATCGTATAGCTAGGCTACTTGACAGTTGTGG GTTCCATGCAGATATTGGGATGCAGGCTCTTATTGAGAAATCCCTTATAAGCGTCTCACGAGATGAGATAAGGATGCATAATTTATTACAGAAAATGGGT GAAGAAATTGTTCGTTGTGAATCCCCTGAAGAGCCTGGAAGACGCAGTAGATTGTGCACTTACAAGGATGTCTGCGACGCACTGGAGGACAGCACAGAAA AAATACAAAGTATATTCTTGGACTTGCCCAAAGCAAAAGAGGCACAATGGAACATGACAGCCTTCTCAAAAATGACCAAACTAAGATTGCTCAAAATTCA CAACGTGGATCTTTCTGAAGGACCCGAGTATCTCTCGAAGGAGTTACGATTCCTTGAATGGCATGCTTACCCTTCAAAGTCATTGCCAGCATGTTTCCGT CCGGATGAGCTTGTTGAACTCTACATGTCTTGCAGCAGTATTGAGCAATTATGGTGCGGATGTAAGATTTTAGTTAATCTAAAAATCATCAATCTCAGCA ACTCACTGTACCTAATCAATACCCCAGATTTTACTGGAATTCCAAATCTCGAGAGTCTGATTCTTGAAGGTTGTGCAAGTTTATCTGAGGTCCATCCATC ATTTGGACGTCACAAGAAGCTTCAACTTGTGAATCTTGTGAACTGCTATAGTCTTAGGATTCTCCCAAGCAACCTTGAAATGGAATCATTAGAAGTTTGC ACTCTCAGTGGCTGCTCAAAACTTGATAAGTTTCCTGATATAGTAGGAAACATGAACTGCTTGAGCATGAACAATTGTAAGAACCTTGAAAGTATTCCCA GTAGCATAAGTGGTTTGAAATCCCTCAAAAGACTTGATGTGTCTGACTGCTCTGAACTTAAGAACATACCAGAGAATTTGGGGGAAGTAGAAAGTTTGGA GGAGTTTGATGCAAGTGGAACTTCAATTAGACAGCCACCAGCGTCTTTTTTTCTTTTGAAGAATCTTAAAGTATTGTCTTTTAATGGATGCAAAAGAATA GCTGTGAATCTCACAGATCAAATATTGCCTTCTTTGTCTGGTCTGTGTTCTTTAGAAGAACTGGATTTATGCGCTTGTAATCTAGGAGAAGGAGCAGTTC CTGAAGATATTGGCTGCTTATCGTCATTGAGGAGTCTAAATCTGAGCAGAAATAACTTTATTAGCCTGCCTAAAAGCATAAATCAGCTTTCTAGGCTTGA AAAGCTTGCCTTGAAGGATTGCGTGATGCTTGAATCATTGCCTGAGGTTCCCTTGAAAGTTCAAAAAGTAAAATTGGATGGCTGTTTAAGACTAAAAGAA ATTCCAGATCCAATAAAGCAAAGCAGTCTGAAAAGATCAAAGTTCAAATGTCTTAACTGTTGGGAACTGTACAAGCATAATGGCCAAAACAACATGGGTC TGAACATGCTTGAAAAATACCTCCAGGGCTCATCTCCAAGACCTGGATTTTGTATTGCTGTTCCTGGAAATGAAATTCCAGGCTGGTTTACTCATCAAAG TAAGGAATCTTCAATTAGGGTGCAGATGCCTTTTAATTATCTGGATGGTGATGATAATGGGTGGATGGGGTTTGCTGCATGTGCTGCATTCAGTACATAT GGTAAAAGTTGTCATTTCAAAGTCGATGGAAAAGAGTATTATCCTTCGCCCATGTATATAGGTTGTAACTCTATGCAAGCTCTGTCGGATCATCTGTGGT TATTCTATTTATCTTTTGATTATCTGAAAGAGCTTAAAGAACGGGAGAATGAATCCTCTAGCGAACTCGAGTTGTCATTTCATTCTTATGATCAAGGAGT CAAGGTGGAGAATTGTGGTGTCCGTATGATTGATGAATTCATGAAAAAGATGAAATCGGACACTGTTTTTCCAGTTTCAACAGTTTCTTATAATGTCGAG CAATCACGGGTAGATGAACAAACAGAGAGTTACACGATTGTCTTCGACAAGGATGAAGAAGATTTCAGTGAAGATAAGGAGAAGGTACAAAGGTGGATGG ATATTCTCACCGAGGTCGCCATTTCATCTGGATCGGAATCATCGAAAAGGTAA
AA sequence Show only first row Show all	>Potri.013G097000.3 pacid=42812624 polypeptide=Potri.013G097000.3.p locus=Potri.013G097000 ID=Potri.013G097000.3.v4.1 annot-version=v4.1 MASSSMQKAASSSYSAPQWMYDVFLSFRGKDTRNNFTSHLYSNLVQRGIDVYMDDRGLERGKTIEPALWKAIEDSRFSIVVFSRDYASSPWCLDELVKIV QCMKEMGHTVLPVFYDVDPSEVADQKGNYKKAFIEHKEKLSENLDRVKCWSDCLSTVANLSGWDVRNSDESQSIKKIAEYIQCKLSFTLQTISKNLVGID SRLKVLNEYIDEQATDTLFIGICGMGGMGKTTVARVMYDRIRWQFQGSCFLANVREVFAEKDGRCRLQEQLLSEISMELPTARDSSRRIDLIKRRLRLKK VLLILDDVDDEEQLQMLAAEHGSFGPGSRIIITSRNKHVLDSHGVTRIYEAEKLNDKDALILFSWKAFKRDQPAEDLSELSKQVVGYANGLPLALEVIGS FLHKRGLREWKSAIDRMNDIPDRKIIDVLRISFDGLHELEKKIFLDIACFLKGMKKDRIARLLDSCGFHADIGMQALIEKSLISVSRDEIRMHNLLQKMG EEIVRCESPEEPGRRSRLCTYKDVCDALEDSTEKIQSIFLDLPKAKEAQWNMTAFSKMTKLRLLKIHNVDLSEGPEYLSKELRFLEWHAYPSKSLPACFR PDELVELYMSCSSIEQLWCGCKILVNLKIINLSNSLYLINTPDFTGIPNLESLILEGCASLSEVHPSFGRHKKLQLVNLVNCYSLRILPSNLEMESLEVC TLSGCSKLDKFPDIVGNMNCLSMNNCKNLESIPSSISGLKSLKRLDVSDCSELKNIPENLGEVESLEEFDASGTSIRQPPASFFLLKNLKVLSFNGCKRI AVNLTDQILPSLSGLCSLEELDLCACNLGEGAVPEDIGCLSSLRSLNLSRNNFISLPKSINQLSRLEKLALKDCVMLESLPEVPLKVQKVKLDGCLRLKE IPDPIKQSSLKRSKFKCLNCWELYKHNGQNNMGLNMLEKYLQGSSPRPGFCIAVPGNEIPGWFTHQSKESSIRVQMPFNYLDGDDNGWMGFAACAAFSTY GKSCHFKVDGKEYYPSPMYIGCNSMQALSDHLWLFYLSFDYLKELKERENESSSELELSFHSYDQGVKVENCGVRMIDEFMKKMKSDTVFPVSTVSYNVE QSRVDEQTESYTIVFDKDEEDFSEDKEKVQRWMDILTEVAISSGSESSKR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G17680			disease resistance protein (TI...		Potri.013G097000 [exp]	0	1
AT5G17680			disease resistance protein (TI...		Potri.013G098000 [exp]	1.00	0.9740
AT5G36930			Disease resistance protein (TI...		Potri.007G143100 [exp]	3.46	0.9547
AT5G36930			Disease resistance protein (TI...		Potri.013G096923 [exp]	7.07	0.9438
AT5G36930			Disease resistance protein (TI...		Potri.006G282300 [exp]	12.64	0.9384
AT1G10930		ATSGS1, RECQL4A...	DNA helicase (RECQl4A) (.1)		Potri.003G015800 [exp]	15.49	0.9047
AT5G36930			Disease resistance protein (TI...		Potri.007G143200 [exp]	17.32	0.9409
AT1G25350		OVA9	ovule abortion 9, glutamine-tR...		Potri.010G122866 [exp]	17.88	0.8822
AT5G36930			Disease resistance protein (TI...		Potri.011G014301 [exp]	18.73	0.9323
AT5G36930			Disease resistance protein (TI...		Potri.011G009251 [exp]	18.97	0.9311
AT4G27220			NB-ARC domain-containing disea...		Potri.019G020102 [exp]	21.44	0.9360

Compare expression of checked genes

Potri.013G097000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.