Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G09220 427 / 6e-146 AAP2 amino acid permease 2 (.1) AT5G63850 425 / 2e-145 AAP4 amino acid permease 4 (.1) AT1G10010 421 / 8e-144 AAP8, ATAAP8 amino acid permease 8 (.1) AT1G44100 414 / 8e-141 AAP5 amino acid permease 5 (.1) AT1G58360 414 / 1e-140 NAT2, AAP1 NEUTRAL AMINO ACID TRANSPORTER 2, amino acid permease 1 (.1) AT5G49630 410 / 1e-139 AAP6 amino acid permease 6 (.1) AT1G77380 402 / 3e-136 AAP3, ATAAP3 amino acid permease 3 (.1) AT5G23810 343 / 3e-113 AAP7 amino acid permease 7 (.1.2) AT5G40780 144 / 1e-37 LHT1, LTH1 lysine histidine transporter 1 (.1.2) AT1G48640 138 / 1e-35 Transmembrane amino acid transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G103551 [exp] 441 / 1e-153 AT1G10010 353 / 2e-119 amino acid permease 8 (.1) Potri.005G068900 [exp] 419 / 1e-142 AT5G09220 799 / 0.0 amino acid permease 2 (.1) Potri.007G100100 [exp] 414 / 1e-140 AT5G09220 768 / 0.0 amino acid permease 2 (.1) Potri.009G133600 [exp] 411 / 3e-139 AT5G09220 711 / 0.0 amino acid permease 2 (.1) Potri.002G112100 [exp] 407 / 3e-138 AT5G49630 691 / 0.0 amino acid permease 6 (.1) Potri.002G079700 [exp] 403 / 2e-136 AT1G77380 756 / 0.0 amino acid permease 3 (.1) Potri.002G080066 [exp] 406 / 5e-136 AT1G77380 751 / 0.0 amino acid permease 3 (.1) Potri.002G079400 [exp] 401 / 7e-136 AT1G77380 765 / 0.0 amino acid permease 3 (.1) Potri.002G079500 [exp] 400 / 1e-135 AT1G77380 766 / 0.0 amino acid permease 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029707 [exp] 419 / 2e-142 AT1G77380 759 / 0.0 amino acid permease 3 (.1) Lus10029703 [exp] 417 / 4e-142 AT1G44100 688 / 0.0 amino acid permease 5 (.1) Lus10007235 [exp] 411 / 1e-139 AT5G49630 720 / 0.0 amino acid permease 6 (.1) Lus10018852 [exp] 408 / 2e-138 AT1G77380 702 / 0.0 amino acid permease 3 (.1) Lus10029702 [exp] 402 / 9e-136 AT1G77380 706 / 0.0 amino acid permease 3 (.1) Lus10037150 [exp] 397 / 2e-134 AT1G77380 680 / 0.0 amino acid permease 3 (.1) Lus10028236 [exp] 397 / 2e-134 AT5G49630 687 / 0.0 amino acid permease 6 (.1) Lus10042740 [exp] 395 / 4e-133 AT1G77380 698 / 0.0 amino acid permease 3 (.1) Lus10036777 [exp] 390 / 1e-131 AT1G77380 684 / 0.0 amino acid permease 3 (.1) Lus10035663 [exp] 380 / 9e-128 AT1G10010 569 / 0.0 amino acid permease 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [poplar] [flax] APC PF01490 [poplar] [flax] Aa_trans Transmembrane amino acid transporter protein
Representative CDS sequence Show only first row Show all	>Potri.013G103500.2 pacid=42812127 polypeptide=Potri.013G103502.1.p locus=Potri.013G103500 ID=Potri.013G103500.2.v4.1 annot-version=v4.1 ATGCAGCTGCAGCTTCAACCTCAAGTGTGGGATTTCAATCTTTGTCTAACAGCCACATATCTAATTCTCTCCCTTTTCATTTCTTTCACTTTTGCTCTTC CTTCTGCCTCTCTCGAGTCAATGGAGATGGATGCGAGTAGTGCTGATGATGGGCGCATCAGAACAGGGACTGTGTGGACTGCAACTGCCCATGCCTTCAC AGCTATTGTCGGTTCTGGAATATTGGCACTGCCATGGAGTGTTGCTCAACTGGGTTGGATCCTCGGACCATTTTTTCTGGTTTTCTTTGCTGCTGTTACA TATTATATAGCTATCCTTTTATGTGACTGCTATAGAACTCCTGACCCTGTTAAAGGAAGGAGGAACTACACGTATATGGATGCTGTCAGAGCACTATTAG GTCCAAAACATGTACTGATCAGTGGTATAATGCAATATTCTATGCTATGGGGAATAATGATTGGCTTCACAATAACAACTGCCATTAGTACAGCGACAAT CAAGAGGTCAGCCTGTTTCCATGAGAAAGGCGCTAACGCAAAATGTAAGGTGTCCGGAAATTCATACATGCTTGCTTTTGGGGCGTTGGAAATTCTTCTA TCTCAATTTCCAAACTTGGAAAAAGTAACATTTCTCTCAGTAATTTCAACACTGACCTCACTTGCATATGCACTCATTGCTCTGTGTCTATCCATTGCAA AATTCTCCATCCAACATGAGGCTAAAGGGACTATAAAGGTTGCCATGGCCGGCGAGGACTTGGCTACATCCACCAAAATCTGGCAGGTCTTTCAAGCTCT TGGTAATATTGCATTTTCCTACACCTATTCCATGCTGCTACTCGAAATTCAGGACACCTTAAAGTCGCCACAGGCAGAAAACAAGGCAATGAAGAGGGTT ACATTATATGCCATTGGTGGAACTGCACTGTTCTACACTTCCTTGGGATGCATGGGGTATGCTGCTTTTGGAGCTGATGTTCCTGGAAATTATCTCACTG GGTTTTACAAACCACTTTGGCTTGTTGATATTGCAAATCTTGCTGTGATCATACATCTGATTGTTGGATATCAGGTGTTTGCCCAAACAATTTTTGCAAT GAATGAGAAGTCGCTTGCAACAAGATGGCAAGCTCACGGTTCTTTCTTCAATAAGATTTATACCGTAAGGTTGCAATGCAAACAAGATTATTCATTTCAG TTTACACCAAGCAGGCTTCTTCTAAGGACAGGTTTTGTTATTTTTACAACTTTGGTAGCAATGATGTTCCCATTCTTCAATGCCATTTTGGGTCTTCTGG GCTCCATTTCTTTCTGGCCATTAACTGTCTACTTCCCCTTGAACATGTACATGGTTCAAGCAAACATCAAGAGAGGAGATTCTACATGGATAATGTTTCA AGTTCTGAGCTTATTGTGCTTGGTTGTCTCACTGGTTTCTGTTATTGGTTCTGTGGCTGGCATGCTAGAGCATCTTAAGCATGCCCAGCTATTTCATATT AACCTTTAG
AA sequence Show only first row Show all	>Potri.013G103500.2 pacid=42812127 polypeptide=Potri.013G103502.1.p locus=Potri.013G103500 ID=Potri.013G103500.2.v4.1 annot-version=v4.1 MQLQLQPQVWDFNLCLTATYLILSLFISFTFALPSASLESMEMDASSADDGRIRTGTVWTATAHAFTAIVGSGILALPWSVAQLGWILGPFFLVFFAAVT YYIAILLCDCYRTPDPVKGRRNYTYMDAVRALLGPKHVLISGIMQYSMLWGIMIGFTITTAISTATIKRSACFHEKGANAKCKVSGNSYMLAFGALEILL SQFPNLEKVTFLSVISTLTSLAYALIALCLSIAKFSIQHEAKGTIKVAMAGEDLATSTKIWQVFQALGNIAFSYTYSMLLLEIQDTLKSPQAENKAMKRV TLYAIGGTALFYTSLGCMGYAAFGADVPGNYLTGFYKPLWLVDIANLAVIIHLIVGYQVFAQTIFAMNEKSLATRWQAHGSFFNKIYTVRLQCKQDYSFQ FTPSRLLLRTGFVIFTTLVAMMFPFFNAILGLLGSISFWPLTVYFPLNMYMVQANIKRGDSTWIMFQVLSLLCLVVSLVSVIGSVAGMLEHLKHAQLFHI NL

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G09220		AAP2	amino acid permease 2 (.1)		Potri.013G103500 [exp]	0	1
AT2G46660		CYP78A6	"cytochrome P450, family 78, s...		Potri.002G175200 [exp]	2.00	0.9205	Pt-CYP78.1
AT2G39830		LRD3, DAR2	LATERAL ROOT DEVELOPMENT 3, DA...		Potri.010G197500 [exp]	3.87	0.9230
AT1G03670			ankyrin repeat family protein ...		Potri.018G077500 [exp]	5.29	0.9119
AT1G75820		ATCLV1, FLO5, F...	FLOWER DEVELOPMENT 5, FASCIATA...		Potri.005G241500 [exp]	10.39	0.9182	CLV1.2
AT1G15960		ATNRAMP6, NRAMP...	NRAMP metal ion transporter 6 ...		Potri.001G044900 [exp]	11.22	0.8664	Pt-NRAMP1.3
AT5G20670			Protein of unknown function (D...		Potri.012G042000 [exp]	13.74	0.8883
AT1G32240	GARP	KAN2, KANADI2	KANADI 2, Homeodomain-like sup...		Potri.001G137600 [exp]	13.78	0.8893
AT2G25737			Sulfite exporter TauE/SafE fam...		Potri.001G182700 [exp]	19.89	0.8794
AT5G15100		ATPIN8, PIN8	PIN-FORMED 8, Auxin efflux car...		Potri.004G124200 [exp]	20.14	0.8822
					Potri.010G132101 [exp]	20.78	0.8894

Compare expression of checked genes

Potri.013G103500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.