Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10010 353 / 2e-119 AAP8, ATAAP8 amino acid permease 8 (.1) AT1G58360 348 / 3e-117 NAT2, AAP1 NEUTRAL AMINO ACID TRANSPORTER 2, amino acid permease 1 (.1) AT5G49630 335 / 3e-112 AAP6 amino acid permease 6 (.1) AT5G09220 333 / 1e-111 AAP2 amino acid permease 2 (.1) AT5G63850 323 / 7e-108 AAP4 amino acid permease 4 (.1) AT1G44100 323 / 8e-108 AAP5 amino acid permease 5 (.1) AT1G77380 313 / 7e-104 AAP3, ATAAP3 amino acid permease 3 (.1) AT5G23810 279 / 1e-90 AAP7 amino acid permease 7 (.1.2) AT5G40780 132 / 8e-35 LHT1, LTH1 lysine histidine transporter 1 (.1.2) AT1G48640 124 / 7e-32 Transmembrane amino acid transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G103500 [exp] 441 / 9e-154 AT5G09220 427 / 1e-145 amino acid permease 2 (.1) Potri.005G068900 [exp] 347 / 8e-117 AT5G09220 799 / 0.0 amino acid permease 2 (.1) Potri.001G470000 [exp] 341 / 6e-115 AT5G23810 570 / 0.0 amino acid permease 7 (.1.2) Potri.007G100100 [exp] 340 / 3e-114 AT5G09220 768 / 0.0 amino acid permease 2 (.1) Potri.002G112100 [exp] 340 / 5e-114 AT5G49630 691 / 0.0 amino acid permease 6 (.1) Potri.009G133600 [exp] 340 / 8e-114 AT5G09220 711 / 0.0 amino acid permease 2 (.1) Potri.011G167000 [exp] 338 / 8e-114 AT5G23810 573 / 0.0 amino acid permease 7 (.1.2) Potri.009G085000 [exp] 335 / 2e-112 AT1G58360 546 / 0.0 NEUTRAL AMINO ACID TRANSPORTER 2, amino acid permease 1 (.1) Potri.006G236000 [exp] 330 / 4e-110 AT1G10010 580 / 0.0 amino acid permease 8 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042744 [exp] 335 / 4e-113 AT1G77380 667 / 0.0 amino acid permease 3 (.1) Lus10028236 [exp] 335 / 5e-112 AT5G49630 687 / 0.0 amino acid permease 6 (.1) Lus10028546 [exp] 332 / 7e-112 AT1G77380 552 / 0.0 amino acid permease 3 (.1) Lus10029707 [exp] 333 / 3e-111 AT1G77380 759 / 0.0 amino acid permease 3 (.1) Lus10007235 [exp] 332 / 7e-111 AT5G49630 720 / 0.0 amino acid permease 6 (.1) Lus10035663 [exp] 331 / 1e-110 AT1G10010 569 / 0.0 amino acid permease 8 (.1) Lus10029703 [exp] 330 / 1e-110 AT1G44100 688 / 0.0 amino acid permease 5 (.1) Lus10037248 [exp] 328 / 2e-109 AT1G10010 563 / 0.0 amino acid permease 8 (.1) Lus10018852 [exp] 327 / 3e-109 AT1G77380 702 / 0.0 amino acid permease 3 (.1) Lus10033760 [exp] 317 / 8e-106 AT1G10010 506 / 5e-178 amino acid permease 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [poplar] [flax] APC PF01490 [poplar] [flax] Aa_trans Transmembrane amino acid transporter protein
Representative CDS sequence Show only first row Show all	>Potri.013G103551.2 pacid=42811535 polypeptide=Potri.013G103551.2.p locus=Potri.013G103551 ID=Potri.013G103551.2.v4.1 annot-version=v4.1 ATGATTGGCTACACAGTTACAACTGCCATTAGCATAGCGTCTGTAAAGAGGTCAACTTGTTTTCATGACAAGGGACATAATGCAAAATGTGGAGTGTCAG GAAATCTCTATATGCTTATATACGGAGCAATAGAAATATTTCTATCTCAATGCCCAAACTTGGAAAAAGTGGCAATCCTTTCAGTAATTGCATCAGTCAC ATCATTTGCATATGCGCTCATAGCATTATGTCTATCTACTGCTAAACTATCCTCAAACCATGAGTTTAAAGGAAGTCTCATGGTAGCGATGGTGGTAAAT ACTGAAGCTACGTCAGAAAGATTTTGGCAAGCTTTTCAAGCTCTTGGAAACATTGCTTTGGCCTATACTTACTGCATGCTACTCCTAGAAATTCAGGATA CCCTGAAGTCAGTTCCACCAGAAAATAAAGTGATGAAGAGAGTATCAATGTATGTTGTTGTTGGGACAGCATTCTTTTACATTTCTCTGGGATGCATTGG TTATGCCGCATTTGGAAATGATGTTCCTGGAAATATTCTCTCCGGATTTTATGAACCATTTTGGCTTGTTGACATGGCCAACATTGCTGTAATTATACAT CTAATTGGGGCCTATCAGGTGTATGCTCAACCACTTTTTGCTATCAATGAAAAATGGATTGGGTCAAGATGGCCAACATCATCTTTCAACAAAATCTACA CCATCAGATTCCCATGCTCGAGAAAAGGTTCCCTTCACTTGACTATAAACAGGTTGTTTCTACGCCCAATCTTCGTTGTTATCACAACTGCAGTTGCAAT GATGTTTCCATTTTTCAATGCAATTCTCGGTCTTCTCGGCTCAGTTTCCTTCTGGCCATTAACAGTCTACTTTCCGATAAGCATGTACATAGTGCAGGCC AAGATCAAGAGAGGAAGCTGCCATTGGTTTGGTCTCCAAGCCTTAGGGTTCGTGTGCTTGATTGTAACTGTCGTCTCTGGAATTGGTTCAGTTGCAGGTA TGGTAGAGTTTCTTAAGAAGGCAAGACTGTTCCATATTGAGATATAA
AA sequence Show only first row Show all	>Potri.013G103551.2 pacid=42811535 polypeptide=Potri.013G103551.2.p locus=Potri.013G103551 ID=Potri.013G103551.2.v4.1 annot-version=v4.1 MIGYTVTTAISIASVKRSTCFHDKGHNAKCGVSGNLYMLIYGAIEIFLSQCPNLEKVAILSVIASVTSFAYALIALCLSTAKLSSNHEFKGSLMVAMVVN TEATSERFWQAFQALGNIALAYTYCMLLLEIQDTLKSVPPENKVMKRVSMYVVVGTAFFYISLGCIGYAAFGNDVPGNILSGFYEPFWLVDMANIAVIIH LIGAYQVYAQPLFAINEKWIGSRWPTSSFNKIYTIRFPCSRKGSLHLTINRLFLRPIFVVITTAVAMMFPFFNAILGLLGSVSFWPLTVYFPISMYIVQA KIKRGSCHWFGLQALGFVCLIVTVVSGIGSVAGMVEFLKKARLFHIEI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G10010		AAP8, ATAAP8	amino acid permease 8 (.1)		Potri.013G103551 [exp]	0	1
AT1G64430			Pentatricopeptide repeat (PPR)...		Potri.003G140800 [exp]	5.74	0.9032
AT2G04270		RNEE/G	RNAse E/G-like (.1.2.3.4.5)		Potri.014G170300 [exp]	7.74	0.8768
AT1G64430			Pentatricopeptide repeat (PPR)...		Potri.001G090800 [exp]	11.22	0.8718
AT2G26350		PEX10, ATPEX10	peroxin 10 (.1)		Potri.006G222000 [exp]	12.40	0.8368
AT5G21990		OEP61, TPR7	tetratricopeptide repeat 7, ou...		Potri.005G156250 [exp]	12.96	0.8388
AT1G53250			unknown protein		Potri.011G112300 [exp]	17.14	0.8609
AT1G29350			Kinase-related protein of unkn...		Potri.002G059300 [exp]	20.73	0.8615
AT5G04760	MYB		Duplicated homeodomain-like su...		Potri.008G016400 [exp]	21.70	0.7475
AT2G06050		AtOPR3, DDE1, O...	DELAYED DEHISCENCE 1, oxophyto...		Potri.004G212100 [exp]	21.84	0.7465
AT5G54090			DNA mismatch repair protein Mu...		Potri.012G005000 [exp]	23.40	0.8667

Compare expression of checked genes

Potri.013G103551 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.