Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G09460 262 / 7e-88 MYB ATMYB6, ATMYB8 myb domain protein 6 (.1) AT1G22640 260 / 1e-86 MYB AtMYB3 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1) AT4G38620 258 / 1e-85 MYB AtMYB4 myb domain protein 4 (.1) AT2G16720 253 / 8e-84 MYB AtY49, AtMYB7 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) AT4G34990 246 / 7e-81 MYB ATMYB32 myb domain protein 32 (.1) AT1G35515 241 / 6e-80 MYB MYB8, HOS10 high response to osmotic stress 10 (.1) AT3G02940 215 / 3e-68 MYB ATMYB107 myb domain protein 107 (.1) AT5G16770 214 / 7e-68 MYB ATMYB9 myb domain protein 9 (.1.2) AT4G28110 212 / 1e-67 MYB ATMYB41 myb domain protein 41 (.1) AT4G21440 211 / 2e-66 MYB ATMYB102, ATM4 A. THALIANA MYB 4, MYB-like 102 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G081500 [exp] 400 / 2e-141 AT1G22640 277 / 1e-93 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1) Potri.004G138000 [exp] 270 / 7e-90 AT4G38620 257 / 8e-85 myb domain protein 4 (.1) Potri.T011400 [exp] 265 / 1e-87 AT4G38620 257 / 5e-85 myb domain protein 4 (.1) Potri.T011525 [exp] 265 / 1e-87 AT4G38620 257 / 5e-85 myb domain protein 4 (.1) Potri.004G174400 [exp] 263 / 1e-87 AT4G38620 305 / 2e-104 myb domain protein 4 (.1) Potri.009G134000 [exp] 259 / 4e-86 AT4G38620 305 / 2e-104 myb domain protein 4 (.1) Potri.005G112000 [exp] 255 / 5e-85 AT4G38620 277 / 5e-94 myb domain protein 4 (.1) Potri.010G114000 [exp] 230 / 2e-75 AT4G38620 243 / 6e-81 myb domain protein 4 (.1) Potri.004G088100 [exp] 221 / 2e-71 AT4G09460 227 / 5e-75 myb domain protein 6 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000411 [exp] 301 / 1e-102 AT4G09460 300 / 5e-103 myb domain protein 6 (.1) Lus10016948 [exp] 299 / 1e-101 AT4G09460 301 / 1e-103 myb domain protein 6 (.1) Lus10001548 [exp] 282 / 5e-95 AT4G09460 291 / 2e-99 myb domain protein 6 (.1) Lus10009448 [exp] 276 / 8e-93 AT4G09460 290 / 2e-99 myb domain protein 6 (.1) Lus10033473 [exp] 240 / 3e-79 AT2G16720 249 / 2e-83 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) Lus10014129 [exp] 250 / 2e-77 AT4G38620 284 / 5e-90 myb domain protein 4 (.1) Lus10028435 [exp] 234 / 7e-77 AT2G16720 246 / 2e-82 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) Lus10041888 [exp] 231 / 1e-75 AT4G38620 245 / 5e-82 myb domain protein 4 (.1) Lus10018418 [exp] 214 / 1e-67 AT4G21440 334 / 5e-114 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10002593 [exp] 211 / 2e-66 AT4G21440 330 / 2e-112 A. THALIANA MYB 4, MYB-like 102 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.013G109300.1 pacid=42810787 polypeptide=Potri.013G109300.1.p locus=Potri.013G109300 ID=Potri.013G109300.1.v4.1 annot-version=v4.1 ATGGGTCGCTCACCTTGTTGTGAAAAAGAACACACCAACAAAGGTGCCTGGACTAAAGAGGAAGACCAGCGCCTAATGGACTATATCAGGGTCCATGGTG AAGGTTGCTGGCGTTCTCTCCCTAAAGCTGCTGGATTGCTTAGATGCGGCAAGAGCTGTAGATTGAGGTGGATAAACTACTTGAGGCCTGATCTTAAAAG AGGGAATTTTACTGACGAAGAAGATGAGATTATTATTAAGCTCCATAGCTTGCTAGGCAACAAATGGTCTTTAATTGCTGGAAGATTACCAGGAAGAACA GATAATGAGATAAAGAACTACTGGAACACACATATCAAGAGAAAGCTGATTAGCCGTGGCATTGACCCACATACACACAGACCTCTAAATGAGAGAACCA CCACTGCAACCATCAAAACTACCACCTCTGCCACCACCAAAGCCACCCAGTTGGACTTCAAAAACACCCCACCTCAATCACTAGCCGAAATCAGTCTCTT AAAAAGCCAGCTTGATTTCAAATACAACAACAATTTTCATAGCAGTCAGTACTCAAGTTTCAATCCCAAGAAAACAGAGACTACTTCCGTTGAAGAAAAT AACTGTACAAGCAGTAGCATGACAACTGATGAAGAACAACAACAACAACAACAGAAGAGGGAGAGTCATCAAGATCAAGATGTAAACTTGGACTTAACTA TAGGGCTAGCTCTCACTCAGACTTCTTCCGCCAACTCGGCCGAGTCAAGACTACAACAACCAGTCTCTTCTTGCCAGATATTCGGTAGTGTGTTAACTCG GCCCGTTTGTCTGTGTTGGCAATTGGATGGTGAAAGAAGGGAATTGTGTAGGAATTGCCAGAATCAGAATCAGAATCAGAGCTCAAAAAGTAATCATAGT AAATAA
AA sequence Show only first row Show all	>Potri.013G109300.1 pacid=42810787 polypeptide=Potri.013G109300.1.p locus=Potri.013G109300 ID=Potri.013G109300.1.v4.1 annot-version=v4.1 MGRSPCCEKEHTNKGAWTKEEDQRLMDYIRVHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTDEEDEIIIKLHSLLGNKWSLIAGRLPGRT DNEIKNYWNTHIKRKLISRGIDPHTHRPLNERTTTATIKTTTSATTKATQLDFKNTPPQSLAEISLLKSQLDFKYNNNFHSSQYSSFNPKKTETTSVEEN NCTSSSMTTDEEQQQQQQKRESHQDQDVNLDLTIGLALTQTSSANSAESRLQQPVSSCQIFGSVLTRPVCLCWQLDGERRELCRNCQNQNQNQSSKSNHS K

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G09460	MYB	ATMYB6, ATMYB8	myb domain protein 6 (.1)		Potri.013G109300 [exp]	0	1
					Potri.004G099433 [exp]	3.46	0.7891
					Potri.005G064250 [exp]	10.39	0.6827
AT1G42430			unknown protein		Potri.005G249700 [exp]	13.49	0.7051
AT2G19810	C3HZnF	AtOZF1	Oxidation-related Zinc Finger ...		Potri.018G058600 [exp]	15.00	0.7022
AT1G42430			unknown protein		Potri.002G011300 [exp]	18.33	0.7434
AT2G41290		SSL2	strictosidine synthase-like 2 ...		Potri.016G037800 [exp]	26.98	0.6785
AT4G22290			Ubiquitin-specific protease fa...		Potri.002G176200 [exp]	28.63	0.7122
AT1G75790		SKS18	SKU5 similar 18 (.1)		Potri.002G021000 [exp]	30.65	0.6040
AT4G37260	MYB	ATMYB73	myb domain protein 73 (.1)		Potri.005G142600 [exp]	33.24	0.6699
AT1G15670			Galactose oxidase/kelch repeat...		Potri.001G007000 [exp]	34.49	0.6530

Compare expression of checked genes

Potri.013G109300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.