Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59710 325 / 7e-112 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G51030 229 / 1e-73 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G61830 224 / 8e-72 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G61220 172 / 4e-52 SDR1 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G01800 167 / 4e-50 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G24190 166 / 1e-49 SDR2 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT5G04900 71 / 1e-13 NOL NYC1-like (.1) AT3G55290 66 / 3e-12 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G17845 64 / 1e-11 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G46170 64 / 2e-11 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G108400 [exp] 235 / 3e-76 AT5G51030 468 / 2e-167 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.012G110200 [exp] 232 / 8e-75 AT5G51030 460 / 1e-164 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.014G080000 [exp] 181 / 4e-55 AT3G61220 332 / 2e-114 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G156800 [exp] 174 / 1e-52 AT3G61220 363 / 1e-126 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G156300 [exp] 174 / 2e-52 AT3G61220 367 / 6e-128 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G080100 [exp] 173 / 3e-52 AT3G61220 350 / 3e-121 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G156600 [exp] 173 / 3e-52 AT3G61220 348 / 7e-121 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.004G235500 [exp] 172 / 9e-52 AT3G61220 313 / 7e-107 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G157000 [exp] 164 / 1e-48 AT3G61220 406 / 9e-144 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035736 [exp] 345 / 2e-119 AT3G59710 355 / 2e-123 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10034835 [exp] 312 / 1e-106 AT3G59710 335 / 2e-115 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10037320 [exp] 273 / 7e-92 AT3G59710 277 / 2e-93 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10032524 [exp] 231 / 2e-74 AT5G51030 493 / 2e-177 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10043023 [exp] 229 / 2e-73 AT5G51030 495 / 3e-178 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10032525 [exp] 217 / 5e-69 AT5G61830 450 / 1e-160 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10008413 [exp] 176 / 5e-53 AT2G24190 273 / 3e-91 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10040933 [exp] 167 / 5e-50 AT3G61220 342 / 1e-118 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10040932 [exp] 166 / 4e-49 AT3G61220 327 / 3e-112 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10014688 [exp] 164 / 7e-49 AT3G61220 348 / 8e-121 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00106 [poplar] [flax] adh_short short chain dehydrogenase CL0063 [poplar] [flax] NADP_Rossmann PF08659 [poplar] [flax] KR KR domain
Representative CDS sequence Show only first row Show all	>Potri.013G127700.1 pacid=42810797 polypeptide=Potri.013G127700.1.p locus=Potri.013G127700 ID=Potri.013G127700.1.v4.1 annot-version=v4.1 ATGGAAGTAAACAAGGAAATAACACAGCCCTATTCTTCTTCTTCCTCTCCTATCCCCACATTTACTACAAGATGGTGGTCTAAGGACACAGTTGCGATGG TCACAGGAGCCAACAAGGGGATAGGGTTTTCCCTTGTAAAGCAGCTTGCTCAACTTGGATTGACTGTGATCTTAACTGCTAGAGATGTAGAGAAGGGAAA CAGTGCTGTTGAATTGCTAAAAAGCCATGGTTTACATGTCCACTTCTACCGCCTTGACGTTTCAGATCCTGCTTCTGTCAAGACCTTGGCTTCGTGGTTT CAAAAGAAATTTGGAGTGCTGGATATTCTTATAAACAATGCTGCTGTATCATTCAATGACATTTATGAGAACTCAGTGGATCATGCAGAAATTGTGATAA AAACCAATTTCTATGGAGTCAAATTGCTCACTGAGGCTCTCTTGCCGATGTTTCGTCTATCAGATTCCATAAGTAGGATCCTTAACATTAGTTCGAGGCT TGGTTCAATTAATAAGATGAGAAACCCTAAGATGAAAGAGATGCTTCTAAATGAAAGATTATCTGCACAGGAGATTGAGGGAATGGTGAATTTGTTCCTT GAAAATGTGAGAGATGGGACATGGAAAAACCAAGGCTGGCCTGAAATATGGACAGATTATGCAGTATCAAAGCTAGCATTAAATGCATATTCTAGAGTTT TAGCCAAACAATATGAGGATTTTGGATTAAGTGTGAATTGTTTCTGCCCTGGCTTCACTCAAACGTCAATGACTAGCGGCAAAGGCACTCACACCGCAGA TGACGCTGCTGAAGTTGGTGCTAGGTTGGCCTTGCTTCCTCCCGGGGAGCTGCCCACCGGAAAATTTTATATAGGGTTTAACCCCGGCGTTATTTCTAAA TTATAG
AA sequence Show only first row Show all	>Potri.013G127700.1 pacid=42810797 polypeptide=Potri.013G127700.1.p locus=Potri.013G127700 ID=Potri.013G127700.1.v4.1 annot-version=v4.1 MEVNKEITQPYSSSSSPIPTFTTRWWSKDTVAMVTGANKGIGFSLVKQLAQLGLTVILTARDVEKGNSAVELLKSHGLHVHFYRLDVSDPASVKTLASWF QKKFGVLDILINNAAVSFNDIYENSVDHAEIVIKTNFYGVKLLTEALLPMFRLSDSISRILNISSRLGSINKMRNPKMKEMLLNERLSAQEIEGMVNLFL ENVRDGTWKNQGWPEIWTDYAVSKLALNAYSRVLAKQYEDFGLSVNCFCPGFTQTSMTSGKGTHTADDAAEVGARLALLPPGELPTGKFYIGFNPGVISK L

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G59710			NAD(P)-binding Rossmann-fold s...		Potri.013G127700 [exp]	0	1
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Potri.007G040200 [exp]	3.74	0.9607
AT5G39970			catalytics (.1)		Potri.017G075800 [exp]	3.74	0.9697
AT4G22030			F-box family protein with a do...		Potri.004G008800 [exp]	4.24	0.9511
AT5G50610			unknown protein		Potri.003G168200 [exp]	6.24	0.9332
AT2G21045			Rhodanese/Cell cycle control p...		Potri.014G131300 [exp]	8.83	0.9548
AT3G53180		NodGS	nodulin/glutamine synthase-lik...		Potri.006G121000 [exp]	12.40	0.8969
AT5G50300		ATAZG2	ARABIDOPSIS THALIANA AZA-GUANI...		Potri.015G090000 [exp]	12.68	0.9516
AT1G61050			alpha 1,4-glycosyltransferase ...		Potri.004G039300 [exp]	12.84	0.9559
AT1G34580			Major facilitator superfamily ...		Potri.002G095900 [exp]	13.41	0.9250	HT1.1
AT1G05577			Domain of unknown function (DU...		Potri.009G024900 [exp]	14.14	0.9514

Compare expression of checked genes

Potri.013G127700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.