Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-POR.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03630 604 / 0 PORC ,POR C protochlorophyllide oxidoreductase C (.1.2) AT4G27440 583 / 0 PORB protochlorophyllide oxidoreductase B (.1.2) AT5G54190 577 / 0 PORA protochlorophyllide oxidoreductase A (.1.2) AT4G23430 104 / 4e-25 AtTic32-IVa translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT1G64590 100 / 1e-23 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G24050 99 / 4e-23 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G23420 99 / 4e-23 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT4G11410 94 / 2e-21 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G37540 92 / 2e-20 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G02540 86 / 2e-18 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G403300 [exp] 595 / 0 AT5G54190 555 / 0.0 protochlorophyllide oxidoreductase A (.1.2) Potri.011G122400 [exp] 595 / 0 AT5G54190 592 / 0.0 protochlorophyllide oxidoreductase A (.1.2) Potri.012G143600 [exp] 110 / 4e-27 AT4G23430 401 / 2e-140 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.015G146600 [exp] 109 / 7e-27 AT4G23420 444 / 6e-158 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.006G083900 [exp] 108 / 2e-26 AT5G02540 452 / 3e-161 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G103000 [exp] 107 / 4e-26 AT4G11410 446 / 4e-159 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.003G128800 [exp] 99 / 5e-23 AT4G23420 442 / 5e-157 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.003G128700 [exp] 96 / 4e-22 AT4G11410 497 / 4e-179 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.012G143800 [exp] 92 / 1e-20 AT4G23420 427 / 3e-151 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039810 [exp] 565 / 0 AT5G54190 603 / 0.0 protochlorophyllide oxidoreductase A (.1.2) Lus10018579 [exp] 562 / 0 AT5G54190 600 / 0.0 protochlorophyllide oxidoreductase A (.1.2) Lus10043090 [exp] 559 / 0 AT5G54190 652 / 0.0 protochlorophyllide oxidoreductase A (.1.2) Lus10032665 [exp] 512 / 0 AT5G54190 545 / 0.0 protochlorophyllide oxidoreductase A (.1.2) Lus10024647 [exp] 109 / 7e-27 AT4G11410 461 / 1e-164 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10038857 [exp] 105 / 3e-25 AT4G23430 436 / 2e-154 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10031101 [exp] 105 / 3e-25 AT4G23430 478 / 1e-171 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10035480 [exp] 103 / 2e-24 AT4G11410 444 / 5e-158 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10035479 [exp] 103 / 2e-24 AT4G11410 444 / 2e-157 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10032282 [exp] 102 / 2e-24 AT4G23430 459 / 8e-164 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00106 [poplar] [flax] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Potri.013G135500.1 pacid=42811165 polypeptide=Potri.013G135500.1.p locus=Potri.013G135500 ID=Potri.013G135500.1.v4.1 annot-version=v4.1 ATGGCTCTTCAAGCAGCCTCTATACTCCCTTCTACTGTCTCCATCTACAAAGAGGGAAAGTCCAATGCTTCTCTTAAGGAGACAGGCTTTTTTGGAGTTT CAGTTCCAAATAATCACCTCAAAGCTGAATTCGACTGTTCTCTAATAAAAAGCAAGGAATTCAGGAAAAGGGAATTACCAGTTAGAACAATTAGGTCTCA AACAGCTACTACAACTCCAGCAATCACTGAGGCAGCACCAGAAGCAAAGAAAACTTTAAGAAAGTGTGTTGTGGTAATTACCGGAACATCATCAGGTTTG GGTTTGGCCACGGCCAAAGCTTTGTCTGAGACAGGGCAATGTCATGTGATTATGGCATGTAGGAACTTTCTTAAGGCAGAGAGGGCAGCTAAAACAGCTG GCATTCCAAAAGAGAACTACACTGTCATGCATCTTGACCTTGCGTCTCTTGAAAGTGTCCGTCAATTTGTGGATACGTTTCGTCGTTCAGGTATGCCGCT TGATGTGCTGGTGTGCAATGCTGCAGTCTACTTACCCACTGCCAAGGAGCCCACTTATACTGCTGAAGGATTTGAGCTCAGTGTTGGGACAAACCATCTT GGTCACTTCTTGCTTGCACGGCTGCTGCTTGATGACTTGAAGAAATCAGATTATCCAACCAAACGTCTCATCATCGTTGGCTCCATAACAGGAAACACAA ACACATTGGCTGGGAATGTGCCTCCAAAGGCTAACCTTGGAGATTTGCGAGGTCTTGTGGGTGGGTTGAATGACCTAAACAGCTCACCCATGATAGATGG AGGAGAATTTGATGGTGCCAAGGCCTATAAAGACAGCAAAGTCTGCAACATGCTCACAATGCAAGAATTACACAGGCGGTACCATGAAGAGACGGGCATC ACCTTTGCTTCCCTCTACCCTGGCTGCATAGCCGAAACAGGCTTATTCAGGAACCATATTCCTTTGTTCAGGACTCTGTTCCCACCCTTCCAGAAGTACA TTACTAAAGGCTATGTTTCAGAAGAGGAAGCAGGAAAAAGACTTGCACAGGTTGTGAGTGATCCGAGCCTGACGAAATCTGGTGTTTACTGGAGCTGGAA TAAGAACTCATCTTCATTCGAAAACCAGCTCTCTAAAGAAGCCAGCAACGCAGAGAAGGCATTGAAGTTGTGGGAGATAAGTGAAAAGCTAGTTGGCCTG GCTTAA
AA sequence Show only first row Show all	>Potri.013G135500.1 pacid=42811165 polypeptide=Potri.013G135500.1.p locus=Potri.013G135500 ID=Potri.013G135500.1.v4.1 annot-version=v4.1 MALQAASILPSTVSIYKEGKSNASLKETGFFGVSVPNNHLKAEFDCSLIKSKEFRKRELPVRTIRSQTATTTPAITEAAPEAKKTLRKCVVVITGTSSGL GLATAKALSETGQCHVIMACRNFLKAERAAKTAGIPKENYTVMHLDLASLESVRQFVDTFRRSGMPLDVLVCNAAVYLPTAKEPTYTAEGFELSVGTNHL GHFLLARLLLDDLKKSDYPTKRLIIVGSITGNTNTLAGNVPPKANLGDLRGLVGGLNDLNSSPMIDGGEFDGAKAYKDSKVCNMLTMQELHRRYHEETGI TFASLYPGCIAETGLFRNHIPLFRTLFPPFQKYITKGYVSEEEAGKRLAQVVSDPSLTKSGVYWSWNKNSSSFENQLSKEASNAEKALKLWEISEKLVGL A

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G03630		PORC ,POR C	protochlorophyllide oxidoreduc...		Potri.013G135500 [exp]	0	1	Pt-POR.2
AT2G33180			unknown protein		Potri.001G053700 [exp]	1.73	0.9830
AT4G27700			Rhodanese/Cell cycle control p...		Potri.012G020700 [exp]	2.00	0.9846
AT3G09210		PTAC13	plastid transcriptionally acti...		Potri.006G094800 [exp]	2.23	0.9862
AT1G32520			unknown protein		Potri.003G089900 [exp]	3.46	0.9779
AT5G47470			Nodulin MtN21 /EamA-like trans...		Potri.003G077300 [exp]	4.89	0.9700	N21L4
AT2G36145			unknown protein		Potri.006G210000 [exp]	4.89	0.9812
AT4G27700			Rhodanese/Cell cycle control p...		Potri.015G008000 [exp]	5.29	0.9732
AT3G52050			5'-3' exonuclease family prote...		Potri.013G125700 [exp]	6.00	0.9710
AT5G44600			S-adenosyl-L-methionine-depend...		Potri.001G073000 [exp]	7.14	0.9710
AT5G22620			phosphoglycerate/bisphosphogly...		Potri.011G052200 [exp]	7.41	0.9794

Compare expression of checked genes

Potri.013G135500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.