Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20880 179 / 5e-52 AP2_ERF AtERF53 ERF domain 53, Integrase-type DNA-binding superfamily protein (.1) AT4G28140 152 / 2e-42 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT1G36060 127 / 5e-33 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT1G22190 122 / 8e-32 AP2_ERF RAP2.4 related to AP2 4, Integrase-type DNA-binding superfamily protein (.1) AT2G22200 122 / 1e-31 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT1G78080 123 / 2e-31 AP2_ERF CAF1, RAP2.4, WIND1 wound induced dedifferentiation 1, related to AP2 4 (.1) AT4G39780 122 / 2e-31 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G65130 114 / 1e-28 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT4G13620 116 / 2e-28 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT2G33710 96 / 1e-22 AP2_ERF Integrase-type DNA-binding superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G102200 [exp] 589 / 0 AT2G20880 195 / 2e-58 ERF domain 53, Integrase-type DNA-binding superfamily protein (.1) Potri.005G077300 [exp] 125 / 5e-32 AT1G78080 207 / 7e-64 wound induced dedifferentiation 1, related to AP2 4 (.1) Potri.002G094200 [exp] 125 / 7e-32 AT1G78080 228 / 1e-72 wound induced dedifferentiation 1, related to AP2 4 (.1) Potri.005G168700 [exp] 125 / 1e-31 AT1G78080 197 / 3e-60 wound induced dedifferentiation 1, related to AP2 4 (.1) Potri.007G090600 [exp] 124 / 2e-31 AT1G78080 205 / 4e-63 wound induced dedifferentiation 1, related to AP2 4 (.1) Potri.017G055400 [exp] 116 / 3e-28 AT4G13620 216 / 9e-66 Integrase-type DNA-binding superfamily protein (.1) Potri.001G315300 [exp] 111 / 3e-26 AT4G13620 194 / 3e-57 Integrase-type DNA-binding superfamily protein (.1) Potri.001G067600 [exp] 99 / 2e-23 AT5G13330 130 / 1e-37 related to AP2 6l (.1) Potri.003G162500 [exp] 98 / 4e-23 AT5G13330 142 / 5e-42 related to AP2 6l (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039809 [exp] 218 / 3e-66 AT2G20880 186 / 1e-55 ERF domain 53, Integrase-type DNA-binding superfamily protein (.1) Lus10018578 [exp] 206 / 1e-61 AT2G20880 195 / 3e-59 ERF domain 53, Integrase-type DNA-binding superfamily protein (.1) Lus10000582 [exp] 119 / 9e-31 AT4G39780 208 / 2e-67 Integrase-type DNA-binding superfamily protein (.1) Lus10016801 [exp] 121 / 1e-30 AT1G78080 245 / 3e-79 wound induced dedifferentiation 1, related to AP2 4 (.1) Lus10033463 [exp] 121 / 2e-30 AT1G78080 248 / 2e-80 wound induced dedifferentiation 1, related to AP2 4 (.1) Lus10020913 [exp] 121 / 2e-30 AT1G78080 246 / 2e-79 wound induced dedifferentiation 1, related to AP2 4 (.1) Lus10019665 [exp] 117 / 5e-30 AT4G39780 209 / 1e-67 Integrase-type DNA-binding superfamily protein (.1) Lus10022497 [exp] 118 / 1e-29 AT1G78080 248 / 2e-80 wound induced dedifferentiation 1, related to AP2 4 (.1) Lus10007124 [exp] 113 / 4e-28 AT4G13620 181 / 1e-54 Integrase-type DNA-binding superfamily protein (.1) Lus10016669 [exp] 113 / 5e-28 AT4G13620 184 / 2e-55 Integrase-type DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [poplar] [flax] MBD-like PF00847 [poplar] [flax] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Potri.013G135600.1 pacid=42811927 polypeptide=Potri.013G135600.1.p locus=Potri.013G135600 ID=Potri.013G135600.1.v4.1 annot-version=v4.1 ATGGCTGCAGCTAAGAATAATTTTGGAAAATCCAAGAAGGGTGTTGTTGATGAAACTCGAAAGATGATGATGGAACAAGATTGGCAGCTTGATAGAGGCA AAAAAGAAGCTGATGTTAGCTTCGAGAGGAGGCAATGGAAACCGGTTTTTGGTGAAGCTTCCTTGATGGATAGGCCTTTGAAGAAAATCTGTAGCCCTGA ACGTCAAGAACAGATACAATCCTCTGCATCTTTAGCTCATCAATTACCATCTTGTTTCTCTGTCTCTTCTAGCTCTGCCTCGACTCTGTCTCTGTATCCG CCTTCTTCGTCGCCTTCACCTATGTCATCTTCAAGTTCCAGACTTGTGTTTCCTTTTGCCTTTGAAGGGTCTAATCAACCTATTCAGTGCCCTCAACAAT TTAGAACAAACCCTTCATTGCCAATTTTCCATCCACTGTCTCAAGTTGCACAGAATCAACAGCAAATGATTTCTTTTGGTCAAAACCAGCAACATGGCAT TGCATATCCTCCGTTTTATGCTGGAGGATTACCAATGGCTGACCACCACCACCACCAGCAGCAGCTGTTTCAGTACTGGAGTGATGCATTGAACTTAAGT CCGAGAGGAAGGATGATGATGATGAACAAGCTGGGGCCGGACGGAAGGCCATTGTTTAGGCCTCCGATTCAGCCTATAAACACAAGAAAGCTTTATAGGG GAGTGAGACAAAGGCATTGGGGAAAATGGGTTGCCGAGATTCGTCTCCCTCGAAATAGGACTCGCCTTTGGCTAGGCACATTTGATACTGCCGAAGATGC TGCCTTAGCTTATGATCGCGAGGCCTTCAAGTTAAGAGGAGAGAATGCTAGGCTGAATTTCCCTGAACTTTTCCTCAACAAAGATAAAGCAACTTCCACA GCTCCAAGTTCAACAGTTTCTTCTCCGCCGACTTCCAATCAAAGTTTAAAGCCAAAACAAGCCCAAGAAGGCCTTAACTTGCAGGCAGAAACCATGTCAC CACCAATATTACCACCACAACCACCACCAGAACAACCTCCAGGAGACCATCCTGATGATGATTCCGGGATGGGTTCGAGTGGGGCTACTGTGAGTGATGA GATTCAGGCAGTGGCAGAGGGGTCTAGTGCAGGGGAAGGCATTTCGGGGTCTCAAGAATTGGAGTGGGGAGACATGGCAGAAGCTTGGTATAATGCTATT CAAGCAGGTTGGGGTCCAGGGAGTCCTGTGTGGGACGATTTGGACTCCACTAACAATCTTTTATTACAATCTCACCTTCCTTTTGTTAATCCAAATCAAC AGCAGTTTAATGATTCTTGTTGTGTTCTCCAAGACAACATGGGCTCAGCTTCTTCTTCTTCCTCCTCTTTCTTCCCAATGAAGTCATACTTTTTGAAGGA TCAAGATTGA
AA sequence Show only first row Show all	>Potri.013G135600.1 pacid=42811927 polypeptide=Potri.013G135600.1.p locus=Potri.013G135600 ID=Potri.013G135600.1.v4.1 annot-version=v4.1 MAAAKNNFGKSKKGVVDETRKMMMEQDWQLDRGKKEADVSFERRQWKPVFGEASLMDRPLKKICSPERQEQIQSSASLAHQLPSCFSVSSSSASTLSLYP PSSSPSPMSSSSSRLVFPFAFEGSNQPIQCPQQFRTNPSLPIFHPLSQVAQNQQQMISFGQNQQHGIAYPPFYAGGLPMADHHHHQQQLFQYWSDALNLS PRGRMMMMNKLGPDGRPLFRPPIQPINTRKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEDAALAYDREAFKLRGENARLNFPELFLNKDKATST APSSTVSSPPTSNQSLKPKQAQEGLNLQAETMSPPILPPQPPPEQPPGDHPDDDSGMGSSGATVSDEIQAVAEGSSAGEGISGSQELEWGDMAEAWYNAI QAGWGPGSPVWDDLDSTNNLLLQSHLPFVNPNQQQFNDSCCVLQDNMGSASSSSSSFFPMKSYFLKDQD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G20880	AP2_ERF	AtERF53	ERF domain 53, Integrase-type ...		Potri.013G135600 [exp]	0	1
AT3G57890			Tubulin binding cofactor C dom...		Potri.016G049000 [exp]	7.93	0.6251
AT1G53820			RING/U-box superfamily protein...		Potri.003G073300 [exp]	14.31	0.6296
AT3G53310	B3	REM20	AP2/B3-like transcriptional fa...		Potri.004G011000 [exp]	20.04	0.6275
AT4G30780			unknown protein		Potri.018G102800 [exp]	50.43	0.5739
AT5G57580			Calmodulin-binding protein (.1...		Potri.005G020200 [exp]	67.55	0.5456	CBP60.7
AT5G23130			Peptidoglycan-binding LysM dom...		Potri.005G092800 [exp]	75.06	0.5232
AT4G16820		PLA-I{beta]2	phospholipase A I beta 2, alph...		Potri.003G081500 [exp]	77.14	0.5438
AT4G38240		GNTI, CGL1	N-ACETYLGLUCOSAMINYLTRANSFERAS...		Potri.009G168000 [exp]	86.32	0.5198	CGL1.3
AT3G47570			Leucine-rich repeat protein ki...		Potri.011G141001 [exp]	102.52	0.5376
AT1G15100		RHA2A	RING-H2 finger A2A (.1)		Potri.007G086300 [exp]	105.45	0.5353

Compare expression of checked genes

Potri.013G135600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.