Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58340 88 / 3e-18 MYB myb-like HTH transcriptional regulator family protein (.1.2) AT1G15720 85 / 2e-17 MYB TRFL5 TRF-like 5 (.1) AT1G06910 80 / 1e-15 MYB TRFL7 TRF-like 7 (.1) AT1G72650 51 / 2e-06 MYB TRFL6 TRF-like 6 (.1.2) AT1G49950 50 / 2e-06 MYB ATTRB1, TRB1 telomere repeat binding factor 1 (.1.2.3) AT3G49850 50 / 2e-06 MYB TBP2, TRB3, ATTRB3 TELOMERE-BINDING PROTEIN 2, telomere repeat binding factor 3 (.1) AT1G72740 50 / 2e-06 MYB Homeodomain-like/winged-helix DNA-binding family protein (.1.2) AT1G17520 50 / 3e-06 MYB Homeodomain-like/winged-helix DNA-binding family protein (.1) AT1G17460 50 / 5e-06 MYB TRFL3 TRF-like 3 (.1.2) AT5G67580 48 / 9e-06 MYB ATTBP3, TRB2, ATTRB2 TELOMERE-BINDING PROTEIN 3, TELOMERE REPEAT BINDING FACTOR 2, Homeodomain-like/winged-helix DNA-binding family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G147400 [exp] 56 / 4e-08 AT1G17520 209 / 2e-66 Homeodomain-like/winged-helix DNA-binding family protein (.1) Potri.018G066300 [exp] 55 / 6e-08 AT1G72740 186 / 6e-58 Homeodomain-like/winged-helix DNA-binding family protein (.1.2) Potri.006G054401 [exp] 53 / 6e-07 AT1G68030 104 / 1e-24 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.003G063700 [exp] 51 / 2e-06 AT1G72650 333 / 7e-106 TRF-like 6 (.1.2) Potri.009G087000 [exp] 50 / 3e-06 AT1G49950 277 / 5e-93 telomere repeat binding factor 1 (.1.2.3) Potri.016G053300 [exp] 50 / 4e-06 AT1G68030 115 / 7e-28 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.001G170200 [exp] 50 / 5e-06 AT1G72650 399 / 5e-131 TRF-like 6 (.1.2) Potri.002G005600 [exp] 49 / 8e-06 AT5G03780 94 / 1e-20 TRF-like 10 (.1) Potri.009G032000 [exp] 49 / 1e-05 AT1G07540 485 / 7e-164 TRF-like 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024200 [exp] 150 / 2e-38 AT1G15720 65 / 5e-11 TRF-like 5 (.1) Lus10042209 [exp] 134 / 3e-33 AT1G15720 70 / 1e-12 TRF-like 5 (.1) Lus10020771 [exp] 135 / 4e-33 AT5G58340 70 / 1e-12 myb-like HTH transcriptional regulator family protein (.1.2) Lus10009912 [exp] 118 / 7e-28 AT1G15720 64 / 1e-10 TRF-like 5 (.1) Lus10007348 [exp] 90 / 1e-18 AT3G23730 355 / 2e-121 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10008606 [exp] 86 / 3e-17 AT5G59320 84 / 3e-19 lipid transfer protein 3 (.1) Lus10017320 [exp] 68 / 1e-11 AT5G58340 76 / 8e-14 myb-like HTH transcriptional regulator family protein (.1.2) Lus10017319 [exp] 65 / 8e-11 AT5G58340 66 / 2e-11 myb-like HTH transcriptional regulator family protein (.1.2) Lus10001494 [exp] 61 / 2e-09 ND 40 / 0.004 Lus10027773 [exp] 57 / 4e-08 ND 56 / 7e-08
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.013G154500.1 pacid=42812555 polypeptide=Potri.013G154500.1.p locus=Potri.013G154500 ID=Potri.013G154500.1.v4.1 annot-version=v4.1 ATGTCATCAATGGCAGCAACCACAAGAAGAAGAAGCTTCGACCCAGATATCACTCGATGGGTAATCGAATTCATACTCCGTCAATTACAAATCCCAGTCC TCACAATCAACAAAATCCTCACCAACCGTCACGTCCCGTTATCAAACACCAGCCCTCGTTTCAAAAAAACCCTTCTTCTCCGTCAAATCGATGCCGACAT CGAAGACGGTTCGGTTTCTGAGAAAACCCTTGATGCGATTGAGATGGTCGAACAAATTGATAGGAATGAGGGGGACTTGATAATGGATTCGATGAAGAAT GCTTATTGTGCTGTGGCGGTGGAGTGTACGGTGAAATATATGCTGGGAAATTTACAGAGGGCGAGAAAGGGGAAGTTTTTGGAGGCGGTGGAGAGGGTTT GGAAGAATAGGGTTGCTGGGTTGAAGAGAGAGGGGAAGAGTGAGTTGGTGACGGGTAAATTGATGAAATATTTTGAGGAAATGGAAGTGGCGTTGAAGGA TGATGTGGTCGCTAAGAGGTGGTTGAGAATGAATACTAGGAATGAGGCTGCGGAGATGGTTAGGATTTATTTAGGGGAAGCTGTTGCGGTTAGTGGGCCG GTGTTTGTTGAGATGGTTGCGAGGATGGAGATGAGAGGGGATGGTGGTCTTCTGTGTAGGAAGAGAGGGGAGGGTGAAAATGAGGGAGTTGAAGTAAATT TGGGTGGTGGGGAGTTGAATGGGTTCGTGGAGAAAAGTAGGGAGGGAGGTGGTGGTGAAAATGGGGCGGCGGGAGTTAATGTGGGTGGCGGGAGGGTTTG TATTGATGTTGATGCTGGAGAGGGATGTTCGAGGTTGGCTGATGGAAATCTGGAGTTGGGGCCTGCTGATATGCCTGCAAAGGAAAGTAGGGAGGGAGGG GGTGGTGAAAATGGGGCAGTGGAAGTCAATGTGGGTGGCGGTAGGGTTTGTATAGATGTTAATGCTGGAGAGGGATGTTCGAGGTCAGATGACGACAATT TGGAGTTGGGTCCTGCTGATATGCCTGCAAAGAAAAGCAGCGAAATTCAGAAGAACAATATGGTTCGTAAACACAGGCATGTTGTTCCAATCAAACGCTC TAAAGGTCCTGTCAAGATCACAAATACAGAAACTGCAGTAGGGGTCGTAGCATCTAGTTTGTATGATACTATAACTACTGATAAAGTGAATACAGCGCGA GGAAAACTCATAGCTAGCTCTAAGGAGCTGCGAGCAAGGGTTAAGGATCCTCTTCCTGATACCATAAAGCAGGCTGATAATATAATGGTTGAAATGGCAA GGAACTTATCTAATCAGGGTACTTTAGCTGAAATACAAAGTGGAAAAAGTGCAGATACTGTTATTTCTGAACTGGCTAGAAAAATAATAAATCCTGATCC TCCAGGAAAAAACCAGAATGGAAAAGATGCAGGATCATCCTTCCTTTCAGCTAATCAGACTGCTGTGCCTTCAGCTCAGAATCAGTGTGGCAAAGATACT GATGCATGTAATCCTTCAGCCAATCACACTGTTGAACCTTTTGCAGAAAACCCGAATCAATCAGAAGTGGATGCAGCCAATCATTTCACCAACCAAACTG CTGTACCTTCAATAAGAAATGAGAAGGGAAAAGGCATGGATGCTCCTAATCTTTCAGCTAATCTCAGCAAAAAGGCTAACACTGGAGTCGCATCCTGCAG CCATCAGAATAATGTTTCTAAACCTAGCTTAATGGAGCGGAATGCTACTGCTCGTACCTTTGAGTGGGACGATTCAATAGATGACTCTTCTGAAGGAACA GGAGATCAGATGAATAGAATTCATTTAGATAGCCCAAAGAGAAAGGCTGTCTCTCCATTGAAGAAATATGAACTGGCAAGGTTTGCTAAGAGGAGAAAAC CTAAGAGGTGGAGTTTGGAGGAGGAAGATGCCTTGAGGGAGGCTGTAAAGAAGTATGGCAAAGGAAACTGGAAGCTGATCTGGAACTCTAGACGTGATGT GTTTCAAGAGAGAACTGAGGTTGATTTGAAGGATAAGTGGAGGAACATGACAAGATATGGTTGA
AA sequence Show only first row Show all	>Potri.013G154500.1 pacid=42812555 polypeptide=Potri.013G154500.1.p locus=Potri.013G154500 ID=Potri.013G154500.1.v4.1 annot-version=v4.1 MSSMAATTRRRSFDPDITRWVIEFILRQLQIPVLTINKILTNRHVPLSNTSPRFKKTLLLRQIDADIEDGSVSEKTLDAIEMVEQIDRNEGDLIMDSMKN AYCAVAVECTVKYMLGNLQRARKGKFLEAVERVWKNRVAGLKREGKSELVTGKLMKYFEEMEVALKDDVVAKRWLRMNTRNEAAEMVRIYLGEAVAVSGP VFVEMVARMEMRGDGGLLCRKRGEGENEGVEVNLGGGELNGFVEKSREGGGGENGAAGVNVGGGRVCIDVDAGEGCSRLADGNLELGPADMPAKESREGG GGENGAVEVNVGGGRVCIDVNAGEGCSRSDDDNLELGPADMPAKKSSEIQKNNMVRKHRHVVPIKRSKGPVKITNTETAVGVVASSLYDTITTDKVNTAR GKLIASSKELRARVKDPLPDTIKQADNIMVEMARNLSNQGTLAEIQSGKSADTVISELARKIINPDPPGKNQNGKDAGSSFLSANQTAVPSAQNQCGKDT DACNPSANHTVEPFAENPNQSEVDAANHFTNQTAVPSIRNEKGKGMDAPNLSANLSKKANTGVASCSHQNNVSKPSLMERNATARTFEWDDSIDDSSEGT GDQMNRIHLDSPKRKAVSPLKKYELARFAKRRKPKRWSLEEEDALREAVKKYGKGNWKLIWNSRRDVFQERTEVDLKDKWRNMTRYG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G58340	MYB		myb-like HTH transcriptional r...		Potri.013G154500 [exp]	0	1
AT5G25060			RNA recognition motif (RRM)-co...		Potri.006G265700 [exp]	6.32	0.7981
AT5G12100			pentatricopeptide (PPR) repeat...		Potri.010G249800 [exp]	7.87	0.7217
AT4G12610		RAP74, ATRAP74	transcription activators;DNA b...		Potri.016G015100 [exp]	8.48	0.7680
AT3G04740		MED14, SWP, ATM...	STRUWWELPETER, ARABIDOPSIS MED...		Potri.005G053700 [exp]	10.00	0.7860	Pt-SWP.2
AT5G40340			Tudor/PWWP/MBT superfamily pro...		Potri.004G130600 [exp]	10.39	0.8077
AT4G30790			unknown protein		Potri.006G180800 [exp]	12.84	0.7520
AT1G80930			MIF4G domain-containing protei...		Potri.016G121100 [exp]	12.96	0.7911
AT5G12230		MED19A	unknown protein		Potri.004G193800 [exp]	13.26	0.7337
AT3G14180	Trihelix	ASIL2	Arabidopsis 6B-interacting pr...		Potri.001G026000 [exp]	16.61	0.7796
AT5G58040		FIP1[V], ATFIP1...	homolog of yeast FIP1 [V], hom...		Potri.018G110100 [exp]	16.88	0.7848

Compare expression of checked genes

Potri.013G154500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.