Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06890 512 / 0 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) AT2G30460 497 / 6e-178 Nucleotide/sugar transporter family protein (.1.2) AT2G28315 357 / 5e-123 Nucleotide/sugar transporter family protein (.1) AT4G09810 179 / 2e-53 Nucleotide-sugar transporter family protein (.1) AT1G34020 169 / 1e-49 Nucleotide-sugar transporter family protein (.1) AT4G39390 166 / 1e-48 NST-K1, ATNST-KT1 A. THALIANA NUCLEOTIDE SUGAR TRANSPORTER-KT 1, nucleotide sugar transporter-KT 1 (.1.2.3) AT1G21070 166 / 4e-48 Nucleotide-sugar transporter family protein (.1) AT1G76670 162 / 6e-47 Nucleotide-sugar transporter family protein (.1) AT5G42420 159 / 8e-46 Nucleotide-sugar transporter family protein (.1.2) AT5G55950 105 / 3e-25 Nucleotide/sugar transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G128900 [exp] 560 / 0 AT1G06890 550 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) Potri.004G211900 [exp] 360 / 1e-123 AT2G28315 530 / 0.0 Nucleotide/sugar transporter family protein (.1) Potri.009G011100 [exp] 349 / 2e-119 AT2G28315 529 / 0.0 Nucleotide/sugar transporter family protein (.1) Potri.005G196500 [exp] 179 / 3e-53 AT4G09810 543 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.002G064700 [exp] 176 / 2e-52 AT4G09810 531 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.005G260300 [exp] 168 / 5e-49 AT1G21070 510 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.005G086700 [exp] 161 / 1e-46 AT4G39390 457 / 1e-162 A. THALIANA NUCLEOTIDE SUGAR TRANSPORTER-KT 1, nucleotide sugar transporter-KT 1 (.1.2.3) Potri.002G000500 [exp] 160 / 3e-46 AT1G76670 528 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.007G077900 [exp] 157 / 3e-45 AT4G39390 521 / 0.0 A. THALIANA NUCLEOTIDE SUGAR TRANSPORTER-KT 1, nucleotide sugar transporter-KT 1 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008596 [exp] 478 / 7e-170 AT2G30460 569 / 0.0 Nucleotide/sugar transporter family protein (.1.2) Lus10009918 [exp] 416 / 2e-146 AT1G06890 493 / 7e-177 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) Lus10021464 [exp] 336 / 3e-114 AT2G28315 527 / 0.0 Nucleotide/sugar transporter family protein (.1) Lus10041315 [exp] 330 / 3e-112 AT2G28315 528 / 0.0 Nucleotide/sugar transporter family protein (.1) Lus10037397 [exp] 332 / 2e-111 AT2G28315 527 / 0.0 Nucleotide/sugar transporter family protein (.1) Lus10041314 [exp] 268 / 1e-88 AT2G28315 420 / 1e-148 Nucleotide/sugar transporter family protein (.1) Lus10024194 [exp] 247 / 1e-81 AT1G06890 238 / 1e-78 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) Lus10042217 [exp] 215 / 5e-67 AT1G06890 201 / 1e-61 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) Lus10033531 [exp] 180 / 1e-53 AT4G09810 543 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10020837 [exp] 161 / 5e-46 AT4G09810 527 / 0.0 Nucleotide-sugar transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [poplar] [flax] DMT PF03151 [poplar] [flax] TPT Triose-phosphate Transporter family
Representative CDS sequence Show only first row Show all	>Potri.013G154800.2 pacid=42812512 polypeptide=Potri.013G154800.2.p locus=Potri.013G154800 ID=Potri.013G154800.2.v4.1 annot-version=v4.1 ATGAGTGAGGGCCAAAAATTCCAGCTAGGGACTGTTGGGGCTTTGAGTTTATCAGTGGTTTCGTCAGTGTCGATTGTAATTTGCAATAAGGCTCTTATTA GCACACTTGGCTTCACTTTTGCTACAACTTTGACAAGCTGGCATCTTCTGGTCACCTTTTGTTCTCTTCATGTAGCATTATGCATGAAATTGTTTGAGCA CAAGCCTTTTGACGCAAGAGCAGTAATGGGATTTGGCATACTAAATGGGATATCCATTGGCCTTTTGAATCTTAGCTTGGGTTTCAATTCTGTTGGTTTT TATCAGATGACAAAATTGGCGATCATCCCATGCACTGTTCTTTTGGAGACACTTTTCTTCCGGAAGCAATTCAGTCGAAATATCCAGCTTTCACTTAGCA TTCTTCTTATGGGTGTTGGAATTGCAACCGTAACCGATCTTCAGCTCAATGTCCTGGGATCTGTCTTGTCTCTGCTTGCAGTTCTTACAACATGTGTTGC TCAGATTATGACTAATACCATCCAAAAGAAGTTCAAAGTCTCTTCAACACAACTTCTGTACCAGTCTTGCCCCTATCAGGCATTAACTTTGTTCATTGTT GGCCCATTCCTGGATGGGCTTCTGACAAACAAAAACGTTTTTGCTTTCAAATACACCCCTCAAGTGCTGTTCTTCATTGTTCTATCCTGCCTGATTTCTG TCTCTGTGAACTTCAGTACTTTTCTGGTGATTGGAAAGACATCTCCTGTCACCTATCAAGTCCTAGGACATTTGAAAACATGCCTTGTTTTGGCATTTGG TTATGTTCTACTTCGTGATCCATTTAGCTGGCGCAATATTTTAGGAATCCTTATTGCAGTGGTTGGAATGGTGCTGTATTCTTATTGTTGCACTATTGAG AGCCAGCAGAAGCAAAATGAAGTGCCAGTAAAATTGCCCGAGGTCAAGGAAAGTGAAACTGATCCGTTAATCAGCGTGGAAAACGGAACTGGGATCTTAG CCGATGTTGCTGTACCAAATGTTCCCGTGTGGACTTCAAACAAGGACTTGGACGCATAA
AA sequence Show only first row Show all	>Potri.013G154800.2 pacid=42812512 polypeptide=Potri.013G154800.2.p locus=Potri.013G154800 ID=Potri.013G154800.2.v4.1 annot-version=v4.1 MSEGQKFQLGTVGALSLSVVSSVSIVICNKALISTLGFTFATTLTSWHLLVTFCSLHVALCMKLFEHKPFDARAVMGFGILNGISIGLLNLSLGFNSVGF YQMTKLAIIPCTVLLETLFFRKQFSRNIQLSLSILLMGVGIATVTDLQLNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIV GPFLDGLLTNKNVFAFKYTPQVLFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLRDPFSWRNILGILIAVVGMVLYSYCCTIE SQQKQNEVPVKLPEVKESETDPLISVENGTGILADVAVPNVPVWTSNKDLDA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G06890			nodulin MtN21 /EamA-like trans...		Potri.013G154800 [exp]	0	1
AT2G20780		AtPLT4	Major facilitator superfamily ...		Potri.004G039100 [exp]	1.41	0.9231
AT5G63400		ADK1	adenylate kinase 1 (.1.2)		Potri.015G092800 [exp]	2.44	0.9060
AT1G09430		ACLA-3	ATP-citrate lyase A-3 (.1)		Potri.005G004900 [exp]	4.00	0.9205
AT1G17030			unknown protein		Potri.004G062000 [exp]	13.41	0.8767
AT1G32050			SCAMP family protein (.1)		Potri.001G134100 [exp]	14.14	0.8864
AT5G16590		LRR1	Leucine rich repeat protein 1,...		Potri.017G130600 [exp]	16.97	0.8897
AT4G10840			Tetratricopeptide repeat (TPR)...		Potri.014G100400 [exp]	21.33	0.8929
AT3G58600			Adaptin ear-binding coat-assoc...		Potri.013G117900 [exp]	22.97	0.8779
AT3G46440		UXS5	UDP-XYL synthase 5 (.1.2)		Potri.001G237200 [exp]	23.45	0.9001
AT4G15830			ARM repeat superfamily protein...		Potri.010G014200 [exp]	23.57	0.9029

Compare expression of checked genes

Potri.013G154800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.