Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48620 92 / 6e-20 Disease resistance protein (CC-NBS-LRR class) family (.1) AT5G43470 90 / 2e-19 HRT, RCY1, RPP8 RECOGNITION OF PERONOSPORA PARASITICA 8, RESISTANT TO CMV\(Y\) 1, HYPERSENSITIVE RESPONSE TO TCV, Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT5G35450 86 / 4e-18 Disease resistance protein (CC-NBS-LRR class) family (.1) AT3G46730 84 / 3e-17 NB-ARC domain-containing disease resistance protein (.1) AT1G53350 82 / 1e-16 Disease resistance protein (CC-NBS-LRR class) family (.1) AT3G14470 81 / 2e-16 NB-ARC domain-containing disease resistance protein (.1) AT3G46710 81 / 2e-16 NB-ARC domain-containing disease resistance protein (.1) AT1G50180 79 / 9e-16 NB-ARC domain-containing disease resistance protein (.1) AT1G58400 78 / 2e-15 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G58807 77 / 6e-15 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G005400 [exp] 464 / 4e-152 AT3G14460 338 / 1e-95 LRR and NB-ARC domains-containing disease resistance protein (.1) Potri.003G015500 [exp] 429 / 8e-142 AT3G14470 402 / 1e-122 NB-ARC domain-containing disease resistance protein (.1) Potri.014G007600 [exp] 422 / 2e-138 AT3G14470 381 / 3e-114 NB-ARC domain-containing disease resistance protein (.1) Potri.014G005600 [exp] 422 / 3e-138 AT3G14470 362 / 3e-107 NB-ARC domain-containing disease resistance protein (.1) Potri.014G003200 [exp] 416 / 3e-135 AT3G14470 352 / 4e-103 NB-ARC domain-containing disease resistance protein (.1) Potri.014G012000 [exp] 410 / 6e-134 AT3G14470 367 / 7e-109 NB-ARC domain-containing disease resistance protein (.1) Potri.004G170232 [exp] 388 / 1e-124 AT3G14470 367 / 1e-108 NB-ARC domain-containing disease resistance protein (.1) Potri.004G170300 [exp] 373 / 3e-121 AT3G14470 401 / 3e-123 NB-ARC domain-containing disease resistance protein (.1) Potri.014G003832 [exp] 372 / 6e-119 AT3G14470 370 / 1e-109 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005218 [exp] 137 / 3e-35 AT3G14470 379 / 2e-113 NB-ARC domain-containing disease resistance protein (.1) Lus10006794 [exp] 109 / 3e-26 AT3G14470 264 / 2e-78 NB-ARC domain-containing disease resistance protein (.1) Lus10039540 [exp] 110 / 4e-26 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10028279 [exp] 107 / 5e-25 AT3G14470 337 / 5e-99 NB-ARC domain-containing disease resistance protein (.1) Lus10002736 [exp] 104 / 1e-24 AT3G14470 317 / 1e-98 NB-ARC domain-containing disease resistance protein (.1) Lus10042117 [exp] 105 / 2e-24 AT3G14470 354 / 2e-105 NB-ARC domain-containing disease resistance protein (.1) Lus10022351 [exp] 104 / 5e-24 AT3G14470 369 / 1e-108 NB-ARC domain-containing disease resistance protein (.1) Lus10016316 [exp] 102 / 3e-23 AT3G14470 494 / 6e-156 NB-ARC domain-containing disease resistance protein (.1) Lus10026132 [exp] 100 / 1e-22 AT3G14460 594 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10039509 [exp] 100 / 1e-22 AT3G14460 613 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Potri.014G005300.4 pacid=42763927 polypeptide=Potri.014G005300.4.p locus=Potri.014G005300 ID=Potri.014G005300.4.v4.1 annot-version=v4.1 ATGGAGGGTTTTCTTACGTTTGCCATGGAGGAGACTTTGACAAGGGTCATCTCTATAGCTTCTGAAGGGATCAGACTTGCCTGGGGATTGGAGGGACAGC TACAAAAGCTCAAGCAGTCCGTGACCATGATCAAAGCTGTGCTCAAAGATGCAGCCAGAAGGCCCGTAACAGACGATTCTGTGAAGCTTTGGCTGGAGAA GCTACAAGATGTAGCTTACGATGCTGAAGATGTTCTAGACGAGTTTGCTTATGAGATTCTCCGAAAAGACCAAAAGAAGGGAAAGGTACGTGACTGCTTT TCACTGCACAACCCTGTTGCATTCCGTCTGAATATGGGTCAGAAAGTTAAGGAGATCAATGGATCACTGGATGAGATTCAGAAACTTGCAACTCGCTTTG GGCTGGGAATTGCATGTCAACATGTAGAGAGTGCTCCTGAAGTTATCCGGGATATAGACCGAGAGACAGATTCCTTGCTTGAAAGCTCAGAAGTTGTAGT AGGAAGGGAGGATGATGTCTATGAAGTTATGAAATTGCTGACTGGCTCGATCGGTCAACAAGTTCTGTCTGTTGTCCCTATTTTTGGGATGGCAGGTCTT GGAAAGACTACCATAGCAAAGAAAGTTTGTCAATTAGCAAGGGAGAAAAACCATTTTGATGTGACTCTATGGGTTTGTGTCTCCAATGATTTCAGTAAAA GGAGGATATTAGGAGAGATGTTGCAAAAGATTGATAAATCTACTGCTTTCTTTTTTCTTCTTGGGTTCTTCTCTTTTTCTTTGACAAAGAAGTCGGTTTG GTGCAAGGGAAGGAAGGGTACTATAAAACAAAGGTCTGTAAAGGAGGTTTTGACAGTGGGAAGCTTAGAGGGAGTTTCTTTCTTTCTGGAGAGGCAAATG CGGTTGCTTTGCTTTATAGAAAGAAGAGAAGGGAAGGGAAGAAAAGAGAAAACAGAAAAGATGTCATCCACTAAGGGAAGCAATGAAGGATCTTTGCTTT TCCACACAGTAGTGTATGTATGTGTATGTATTGGCAGGTACAGGGCAAGGCAATATGAGAACAGATGGAGCGCATGCCAGTGA
AA sequence Show only first row Show all	>Potri.014G005300.4 pacid=42763927 polypeptide=Potri.014G005300.4.p locus=Potri.014G005300 ID=Potri.014G005300.4.v4.1 annot-version=v4.1 MEGFLTFAMEETLTRVISIASEGIRLAWGLEGQLQKLKQSVTMIKAVLKDAARRPVTDDSVKLWLEKLQDVAYDAEDVLDEFAYEILRKDQKKGKVRDCF SLHNPVAFRLNMGQKVKEINGSLDEIQKLATRFGLGIACQHVESAPEVIRDIDRETDSLLESSEVVVGREDDVYEVMKLLTGSIGQQVLSVVPIFGMAGL GKTTIAKKVCQLAREKNHFDVTLWVCVSNDFSKRRILGEMLQKIDKSTAFFFLLGFFSFSLTKKSVWCKGRKGTIKQRSVKEVLTVGSLEGVSFFLERQM RLLCFIERREGKGRKEKTEKMSSTKGSNEGSLLFHTVVYVCVCIGRYRARQYENRWSACQ

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G48620			Disease resistance protein (CC...		Potri.014G005300 [exp]	0	1
AT1G75400			RING/U-box superfamily protein...		Potri.002G031600 [exp]	4.47	0.7857
AT3G24050	GATA	GATA1	GATA transcription factor 1 (....		Potri.001G053500 [exp]	6.00	0.7903
AT3G62420	bZIP	ATBZIP53	basic region/leucine zipper mo...		Potri.014G120800 [exp]	11.31	0.7370
AT2G17525			Pentatricopeptide repeat (PPR)...		Potri.005G102400 [exp]	12.20	0.8205
AT2G18410			unknown protein		Potri.004G099000 [exp]	15.29	0.7826
AT3G57050		CBL	cystathionine beta-lyase (.1.2...		Potri.016G038200 [exp]	15.55	0.7673	CBL.1
AT1G07150		MAPKKK13	mitogen-activated protein kina...		Potri.001G278600 [exp]	16.49	0.7355
AT1G80680		NUP96, SAR3, MO...	PRECOCIOUS, MODIFIER OF SNC1,3...		Potri.003G180100 [exp]	16.91	0.7632	PRE.1
AT3G51320			Pentatricopeptide repeat (PPR)...		Potri.005G109800 [exp]	18.33	0.7775
AT1G77130		PGSIP2, GUX3	glucuronic acid substitution o...		Potri.005G187900 [exp]	22.80	0.7164

Compare expression of checked genes

Potri.014G005300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.