Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14460 339 / 8e-96 LRR and NB-ARC domains-containing disease resistance protein (.1) AT3G14470 327 / 2e-93 NB-ARC domain-containing disease resistance protein (.1) AT3G46730 207 / 7e-55 NB-ARC domain-containing disease resistance protein (.1) AT1G59218 204 / 3e-53 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G58848 204 / 3e-53 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT3G07040 199 / 6e-52 RPS3, RPM1 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) AT3G50950 197 / 9e-52 ZAR1 HOPZ-ACTIVATED RESISTANCE 1 (.1.2) AT1G53350 198 / 1e-51 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G50180 193 / 3e-50 NB-ARC domain-containing disease resistance protein (.1) AT5G35450 187 / 2e-48 Disease resistance protein (CC-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G003600 [exp] 1915 / 0 AT3G14470 388 / 2e-115 NB-ARC domain-containing disease resistance protein (.1) Potri.014G003200 [exp] 1538 / 0 AT3G14470 352 / 4e-103 NB-ARC domain-containing disease resistance protein (.1) Potri.004G170232 [exp] 1504 / 0 AT3G14470 367 / 1e-108 NB-ARC domain-containing disease resistance protein (.1) Potri.014G003832 [exp] 1478 / 0 AT3G14470 370 / 1e-109 NB-ARC domain-containing disease resistance protein (.1) Potri.014G002900 [exp] 1472 / 0 AT3G14470 397 / 2e-119 NB-ARC domain-containing disease resistance protein (.1) Potri.014G005600 [exp] 1406 / 0 AT3G14470 362 / 3e-107 NB-ARC domain-containing disease resistance protein (.1) Potri.014G007600 [exp] 1402 / 0 AT3G14470 381 / 3e-114 NB-ARC domain-containing disease resistance protein (.1) Potri.014G012000 [exp] 1396 / 0 AT3G14470 367 / 7e-109 NB-ARC domain-containing disease resistance protein (.1) Potri.003G015500 [exp] 1359 / 0 AT3G14470 402 / 1e-122 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039540 [exp] 438 / 4e-132 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10026109 [exp] 408 / 7e-120 AT3G14470 598 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10005218 [exp] 403 / 3e-119 AT3G14470 379 / 2e-113 NB-ARC domain-containing disease resistance protein (.1) Lus10005321 [exp] 404 / 2e-118 AT3G14460 607 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10039509 [exp] 399 / 7e-117 AT3G14460 613 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10026132 [exp] 387 / 1e-111 AT3G14460 594 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10007261 [exp] 368 / 3e-106 AT3G14460 654 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10022351 [exp] 352 / 2e-100 AT3G14470 369 / 1e-108 NB-ARC domain-containing disease resistance protein (.1) Lus10024173 [exp] 340 / 9e-97 AT3G14460 681 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10042117 [exp] 325 / 7e-93 AT3G14470 354 / 2e-105 NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Potri.014G005400.4 pacid=42764337 polypeptide=Potri.014G005400.4.p locus=Potri.014G005400 ID=Potri.014G005400.4.v4.1 annot-version=v4.1 ATGGCAGCAGAGCTTTTTCTTACGTTTGCCATGGAGGAGACTTTGACAAGGGTCATTTCCATAGCTGCTGAAGGGATCAGACTTGCTTGGGGATTGGAGG GACAGCTGCAAAAGCTCGAAGACTCCTTGATCATGATCAAAGTTGTGCTCAAAGATGCAGCCAGAAGGCCCGTAACAGACGATTCTGCGAAGCTTTGGCT GGAGAAGCTACAAGATGTAGCTTACGACGCTGAAGATGTTCTCGACGAGTTTGCTTATGAGATTCTCCGAAAAGACCAAAAGAAGGGAAAGGTACGTGAC TGCTTTTCACTGCACAACCCTGTTGCATTCCGTCTGAATATGGGTCAGAAAGTTAAGGAGATCAATGGATCACTGCATGATATTCAGAAACTTGCAACTC GCTTTGGGCTGGGAATTGCATCTCAACATGTAGAGAGTGCTCCTGAAGTTATCCGGGATATAGACCGAGAGACAGATTCCTTGCTTGAAAGCTCAGAAGT TGTAGTAGGAAGGGAGGATGATGTCTATAAAGTTATGAAATTGCTGATTGGCTCGATCGGTCAACAAGTTCAGTCTGTTGTCCCTATTGTTGGGATGGCA GGTCTTGGAAAGACTACCATAGCAAAGAAAGTTTGTCAATTAGTAAGGGAGAAAAAACATTTTGACGTGACTCTATGGGTTTGTGTCTCTAATGATTTCA GTAAAAGGAGGATATTAGGAGAGATGTTGCAAAAGATTGATAAATCTACTGGTGGGTTGAGCAATCTAGATGCAATTCTTGAAAAACTTCAGCAAGAGCT GGAAAAGAAAACACTTCTTCTTGTTCTTGATGATGTGTGGAATGAAGACTATGATAAGTGGGCTGGTTTGAAGGAGGGACTGTTAAAAATTAACAGCAGG AATGGGAATGCTGTTGTTGTTACAACCCGCAGTAAGAAAGTAGCAGACATGATGGAGACTTCTCCTGGGATTCAGCACGAGCCAGGGAGACTATCAGCTG ATCAATGTTGGTCCATTATCAAGCAAAAGTTGAGCAGGGGTGGACGAGAAACAATACCATCAGACTTGGAGTCTATTGGAAAAGAGATTGCAAAGAAATG TGGAGGGATTCCATTACTTGCTAAAGTTTTGGGAGGAACTCTTCACGGAAAGCAGACGCATGAGTGGCAGTCAATTCTACACAGTAGAATTTGGGATTCT CAGTATGGAGATAAAGCTTTGCGCATATTGAGACTCAGTTTTGATTACTTGTCATCGCCAACATTGAAAAAATGTTTTGCATACTGTTCCATTTTTCCTA AAGATTTTAAAATCGGAAGGGAAGAGCTAATTCAACTTTGGATGGCTGAAGGTTTTCTCAGGCCACCAAATGGGAGGATGGAAGACAAAGGCAACAAGTG TTTCAATGACTTGCTTGCAAATTCCTTTTTCCAAGATGTTGAAAGGAATGAGTGTGAGATCGTAACAAGTTGCAAGATGCATGATCTTGTGCATGATCTT GCATTGCAGGTCTCAAAATCAGAAGTGTTAAATCTGGAGGAGGATTCGGCTGTTGAAGGGGCATCTCATATTCGTCATCTAAATCTCATATCTCGTGGGG ATGTTGAGGCAGCATTTCCAGTGGGTGATGGTAGAAAATTGCGAACTGTTTTCTCAATGGTTGATGTATTCAATGGGTCTTGGAAATTCAAAAGCTTGAG AACTCTCAAATTGCAACGGTCTGATATCACAGAGTTGCCAGATTCAATTTGCAAGCTGAGACATTTGAGATATCTTGATGTCTCACGTACCAGAATCAGA GAATTGCCAGAATCCATTACCAAGCTCTACCATTTGGAAACATTAAGATTCACTGATTGCAAGTCACTAGAGAAGCTTCCCAAGAAAATGAGAAATTTAG TCAGCTTGAGACATCTCCATTTTGACGATCCAAAGCTAGTGCCAGCTGAGGTGAGACTCTTAACACGCCTTCAAACTCTGCCTTTTTTTGTTCTGGGTCA AAATCATATGGTTGAAGAGCTGGGATGTTTGAATGAACTAAGAGGAGAATTGCAGATATCCAAGCTTGAGAAAGTGAGAGACAGAGAAGAAGCTGAGGAG GCAAAACTGCGAGAAAAAAGAATGAACAAATTGGTGTTTAAATGGAGTGATGATGAAGTTAACAGTAGTGTCCGTAACGAGGATGTGCTGGAAGGCCTGC AGCCTCACCCAGACATAAGAAGCTTGACAATTGGGGGTTATGGAGGTGAAAATTTCTCATCATGGATATTGCAACTCAATAATCTGACGGTGCTGAGATT GAATGGCTGCAGCAAGTTGAGGCAACTCCCAACACTTGGATGTCTTCCTCGCCTTAAGATTCTATATATGAATAGAATGCCTAATGTGAAATGTATAGGC AAGGAGTTCTATAGTAGCGGCAGTGGCAGTGCAACAGTACTGTTTCCAGCACTAAAAGAACTCACTTTGAGGTATATGGATGGTCTTGAAGAATGGATGG TACCAGGTGGAGAAGGTGATCGAGTATTTCCTTGTCTTGAAAAGTTGAGCATTGCGATGTGTGGCAAGTTGAGGCAACTCCCAACACTTGGATGTCTTCC TCGCCTTAAGATTCTAAAGATGAGTGGAATGCCTAATGTGAAATGTATAGGCAAGGAGTTCTATAGTAGCAGCAGTGGCAGTGCAGCAGTACTGTTTCCA GCACTAAAAGAACTCACTTTGGGGGATATGAATGGTCTTGAAGAATGGATGGTACCAGGTGGAGAAGGTGATCAAGTATTTCCTTGTCTTGAAAAGTTGA GCATTGAGATGTGTGTCAAGTTGAGGCAACTCCCAACACTTAGATGTCTTCCTCGCCTTAAGATTCTAGATATGAGTAGAATGCCTAATGTGAAATGTAT AGGCAAGGAGTTCTATAGTAGCAGCAGTGGCAGTGAAGCAGTACTGTTTGCAGCACTGAAAGAACTCACTTTGAGGTATATGGACGGTGTTGAAGAATGG ATGGTACCAGGTGGAGAAGGTGATCGAGTATTTCCTTGTCTTGAAGAGTTGAGCATTGAGATGTGTGGGAAGTTGAGGCAACTCCCAACACTTGGATGTC TTCCTCGCCTTAAGATTCTAGATATGATTGGAATGCCTAATGTGAAATGTATAGGCAAGGAGTTCTATAGTAGCAGCAGTGGCAGTGCAGCAGTACTGTT TCCAGCACTAAAAGGACTCAGTCTATTTAGCATGGGGGGTCTTGAAGAATGGATGGTACCAGGTGGAGAAGGTGATCAAGTATTTCCTTGTCTTGAAAAG TTGAGCATTGAGTGGTGTGGAAAGTTGGAAAGCATTCCGATATGTCGTCTTTCATCTCTTGTAGAATTTGGAATTTACGTATGTGATGAACTGAGATATT TGTCTGGTGAGTTTCATGGCTTCAAGTCTCTTCAGATTTTAAGGATACAGAGGTGTCCAAAGCTGGCATCCATTCCAAGCGTACAACACTGCACAGCTCT GGTGGAATTGTGTATATTACTGTGCAGTGAGTCGATCTCAATTCCTAGTGATTTTCGAGAATTGAAATATTCTTTGAAGAGATTGGATATTTGGGGATGT AAAATGGGAGCTCTTCCAAGCGGACTACAATGTTGCGCATCTCTAGAGGTATTGGACATAATTAATTGGAGTGAGCTTATCCATATCAGTGATTTACAAG AATTGTCTTCGCTTCGAAGATTAAAGATTAGAGGTTGTGATAAGCTCATCAGTTTTGATTGGCATGGTTTACGACAATTGCCTTCTCTTGTTGATTTAGC AATCACCACATGTCCCAGTTTGAGTAATTTCCCAGAGGAGCATTGCTTAGGCGGCCTCACGCAACTGGAGGAATTGAGCATCGGTGGTTTCTCAGAGGAG ATGGAGGCTTTTCCTGCAGGAGTTTTAAACTCAATCCAACACCTCAACTTGAATGGGTCCCTCAAATCCCTAAGGATATGTGGATGGGATAAACTGAAGA GTGTACCACACCAACTTCAACACCTCACTGCCCTCGAGAACTTGCGTATATGTGATTTCAACGGTGAGGAATTTGAGGAAGCTTTGCCAGATTGGTTGGC CAACCTTTCTTCTCTTCGATCTCTTGAGATTAGTAATTGCAAGAATCTCAAGTATCTGCCAAGCTGTACTCAACGCCTCAACAAATTAAAGACATTGGAG ATTCATGGATGTCCACATCTTATAGAAAATTGTAGAGAGGAGAATGGCTCTGAGCGGCCCAAGATTTCTCATATCCCATCACTCCATATAAGATAG
AA sequence Show only first row Show all	>Potri.014G005400.4 pacid=42764337 polypeptide=Potri.014G005400.4.p locus=Potri.014G005400 ID=Potri.014G005400.4.v4.1 annot-version=v4.1 MAAELFLTFAMEETLTRVISIAAEGIRLAWGLEGQLQKLEDSLIMIKVVLKDAARRPVTDDSAKLWLEKLQDVAYDAEDVLDEFAYEILRKDQKKGKVRD CFSLHNPVAFRLNMGQKVKEINGSLHDIQKLATRFGLGIASQHVESAPEVIRDIDRETDSLLESSEVVVGREDDVYKVMKLLIGSIGQQVQSVVPIVGMA GLGKTTIAKKVCQLVREKKHFDVTLWVCVSNDFSKRRILGEMLQKIDKSTGGLSNLDAILEKLQQELEKKTLLLVLDDVWNEDYDKWAGLKEGLLKINSR NGNAVVVTTRSKKVADMMETSPGIQHEPGRLSADQCWSIIKQKLSRGGRETIPSDLESIGKEIAKKCGGIPLLAKVLGGTLHGKQTHEWQSILHSRIWDS QYGDKALRILRLSFDYLSSPTLKKCFAYCSIFPKDFKIGREELIQLWMAEGFLRPPNGRMEDKGNKCFNDLLANSFFQDVERNECEIVTSCKMHDLVHDL ALQVSKSEVLNLEEDSAVEGASHIRHLNLISRGDVEAAFPVGDGRKLRTVFSMVDVFNGSWKFKSLRTLKLQRSDITELPDSICKLRHLRYLDVSRTRIR ELPESITKLYHLETLRFTDCKSLEKLPKKMRNLVSLRHLHFDDPKLVPAEVRLLTRLQTLPFFVLGQNHMVEELGCLNELRGELQISKLEKVRDREEAEE AKLREKRMNKLVFKWSDDEVNSSVRNEDVLEGLQPHPDIRSLTIGGYGGENFSSWILQLNNLTVLRLNGCSKLRQLPTLGCLPRLKILYMNRMPNVKCIG KEFYSSGSGSATVLFPALKELTLRYMDGLEEWMVPGGEGDRVFPCLEKLSIAMCGKLRQLPTLGCLPRLKILKMSGMPNVKCIGKEFYSSSSGSAAVLFP ALKELTLGDMNGLEEWMVPGGEGDQVFPCLEKLSIEMCVKLRQLPTLRCLPRLKILDMSRMPNVKCIGKEFYSSSSGSEAVLFAALKELTLRYMDGVEEW MVPGGEGDRVFPCLEELSIEMCGKLRQLPTLGCLPRLKILDMIGMPNVKCIGKEFYSSSSGSAAVLFPALKGLSLFSMGGLEEWMVPGGEGDQVFPCLEK LSIEWCGKLESIPICRLSSLVEFGIYVCDELRYLSGEFHGFKSLQILRIQRCPKLASIPSVQHCTALVELCILLCSESISIPSDFRELKYSLKRLDIWGC KMGALPSGLQCCASLEVLDIINWSELIHISDLQELSSLRRLKIRGCDKLISFDWHGLRQLPSLVDLAITTCPSLSNFPEEHCLGGLTQLEELSIGGFSEE MEAFPAGVLNSIQHLNLNGSLKSLRICGWDKLKSVPHQLQHLTALENLRICDFNGEEFEEALPDWLANLSSLRSLEISNCKNLKYLPSCTQRLNKLKTLE IHGCPHLIENCREENGSERPKISHIPSLHIR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G14460			LRR and NB-ARC domains-contain...		Potri.014G005400 [exp]	0	1
AT3G14470			NB-ARC domain-containing disea...		Potri.014G005600 [exp]	1.41	0.9313
AT3G14470			NB-ARC domain-containing disea...		Potri.004G170232 [exp]	3.87	0.8951
AT3G14470			NB-ARC domain-containing disea...		Potri.014G007600 [exp]	6.48	0.8695
AT5G22250		AtCAF1b	CCR4- associated factor 1b, Po...		Potri.006G205600 [exp]	9.16	0.8131
AT5G36930			Disease resistance protein (TI...		Potri.006G282900 [exp]	10.39	0.8466
AT4G27190			NB-ARC domain-containing disea...		Potri.013G015900 [exp]	10.48	0.8477
AT4G27190			NB-ARC domain-containing disea...		Potri.013G015700 [exp]	10.58	0.8244
AT1G02120		VAD1	VASCULAR ASSOCIATED DEATH1, GR...		Potri.002G137800 [exp]	10.90	0.8231
AT3G42670		CLSY1, CLSY, CH...	CLASSY 1, CLASSY1, chromatin r...		Potri.008G073500 [exp]	11.61	0.8303
AT5G36930			Disease resistance protein (TI...		Potri.006G283800 [exp]	12.44	0.8055

Compare expression of checked genes

Potri.014G005400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.