Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PDE135.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26510 734 / 0 PDE135 pigment defective embryo 135, Xanthine/uracil permease family protein (.1.2) AT2G34190 588 / 0 Xanthine/uracil permease family protein (.1) AT2G05760 574 / 0 Xanthine/uracil permease family protein (.1) AT5G62890 500 / 3e-173 Xanthine/uracil permease family protein (.1.2.3.4) AT1G60030 490 / 4e-169 ATNAT7 ARABIDOPSIS NUCLEOBASE-ASCORBATE TRANSPORTER 7, nucleobase-ascorbate transporter 7 (.1) AT1G10540 480 / 3e-165 ATNAT8 nucleobase-ascorbate transporter 8 (.1) AT5G49990 468 / 2e-160 Xanthine/uracil permease family protein (.1) AT1G49960 448 / 7e-153 Xanthine/uracil permease family protein (.1) AT1G65550 434 / 3e-147 Xanthine/uracil permease family protein (.1) AT5G25420 275 / 6e-87 Xanthine/uracil/vitamin C permease (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G129400 [exp] 906 / 0 AT2G26510 751 / 0.0 pigment defective embryo 135, Xanthine/uracil permease family protein (.1.2) Potri.011G068200 [exp] 597 / 0 AT2G34190 928 / 0.0 Xanthine/uracil permease family protein (.1) Potri.004G058800 [exp] 595 / 0 AT2G34190 927 / 0.0 Xanthine/uracil permease family protein (.1) Potri.014G157800 [exp] 582 / 0 AT2G05760 930 / 0.0 Xanthine/uracil permease family protein (.1) Potri.015G072600 [exp] 500 / 2e-173 AT5G62890 908 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Potri.012G077400 [exp] 499 / 9e-173 AT5G62890 914 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Potri.008G146400 [exp] 490 / 3e-169 AT1G60030 881 / 0.0 ARABIDOPSIS NUCLEOBASE-ASCORBATE TRANSPORTER 7, nucleobase-ascorbate transporter 7 (.1) Potri.010G095500 [exp] 484 / 9e-167 AT1G60030 869 / 0.0 ARABIDOPSIS NUCLEOBASE-ASCORBATE TRANSPORTER 7, nucleobase-ascorbate transporter 7 (.1) Potri.009G086800 [exp] 450 / 1e-153 AT1G49960 727 / 0.0 Xanthine/uracil permease family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002787 [exp] 761 / 0 AT2G26510 748 / 0.0 pigment defective embryo 135, Xanthine/uracil permease family protein (.1.2) Lus10032758 [exp] 759 / 0 AT2G26510 751 / 0.0 pigment defective embryo 135, Xanthine/uracil permease family protein (.1.2) Lus10029238 [exp] 585 / 0 AT2G34190 926 / 0.0 Xanthine/uracil permease family protein (.1) Lus10030014 [exp] 565 / 0 AT2G05760 927 / 0.0 Xanthine/uracil permease family protein (.1) Lus10035311 [exp] 523 / 0 AT2G05760 867 / 0.0 Xanthine/uracil permease family protein (.1) Lus10004228 [exp] 498 / 4e-172 AT5G62890 972 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Lus10029191 [exp] 486 / 2e-167 AT5G62890 914 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Lus10010707 [exp] 485 / 3e-167 AT5G62890 916 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Lus10042138 [exp] 482 / 2e-165 AT5G62890 932 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Lus10034125 [exp] 475 / 6e-163 AT1G49960 944 / 0.0 Xanthine/uracil permease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [poplar] [flax] APC PF00860 [poplar] [flax] Xan_ur_permease Permease family
Representative CDS sequence Show only first row Show all	>Potri.014G035800.9 pacid=42763730 polypeptide=Potri.014G035800.9.p locus=Potri.014G035800 ID=Potri.014G035800.9.v4.1 annot-version=v4.1 ATGGGAGAAACAGCTCACACCCACCAGCAGCCACCGCCACCACAAGCAGCAGCAGCACCACCTCCATCATCACTTGCTTTTTCAAAAGGTCCCTCTTGGG CTCCGGCTGAGCAACTCCACCAGCTCCAGTACTGCATCCAGTCCAATCCTCCTTGGTATCAGACATGTCTGCTGGCTTTCCAACACTACATTGTGATGCT TGGAACTACGGTCTTGATTACACGTACTCTTGTGACTCAAATGGGCGGCGAACCTGGTGATGCTGCCCGTGTGATTCAAACGTTGGTGTTCATGTCAGGA ATCAATACACTGCTTCAGACAATGATTGGAACACGGCTTCCCACAGTGATGGGACCTTCCTATGCTTTTGTACTGCCAGTTTTATCAATCATCAGAGATT ACAATGATGAAACTTTCTCAAAAGACCATGATAGATTTGTAGACATTATGAGAACTATACAAGGATCACTGATTGTTTCTTCCTTTGTCAACATCATTCT CGGGTATAGCAAAGGATGGGGTACTTTAACAAGGTTCTTTAGTCCCATTACTATTGTACCTGTGGTTTGTGTTGTGGGTCTTGGTCTGTTTATGAGGGGC TTTCCACTGCTTGCCAACTGTGTTGAGCTTGGCCTGCCTATGCTGATTGTGCTAGTCATTTGTCAGTATTTGAAGCGTTTCCATCCCAGTGTCCATCCTG TACTTGAGATGTTTGGCTTACTCATCTGCATTGGTATTATTTGGGCTTTCGCTGCTATCCTCACTGTTGCTGGTGCTTACAACAATGTGGGGTATCAAAC TAAACAGAGTTGCCGCACAGACCGATCATATCTTGTATCATCTTCTCCATGGGTTAGAGTCCCATACCCGTTTCAATGGGGTGCACCTAAATTTAGAGCA AGTCATGTCTTCGGGATGATTGGAGCAGCACTTGTTTCATCTGCAGAGTCAACTGGAACGTTTTTTGCTGCTTCACGGCTTGCAGGTGCTACGAGCCCCC CAGCTCATGTTCTGAGCCGAAGTATTGGTCTACAGGGTGTTGGCTTGCTGCTTAATGGGATTTTTGGTGCTGCTGTTGGCACCACTGCATCTGTCGAAAA TGTTGGGCTTCTTGGACTTACACACATAGGGAGCCGAAGAGTGGTGCAGGTTTCAACTGCTTTCATGTTTTTTTTCTCCATCTTTGGGAAATTTGGTGCC TTGTTCGCGTCTATTCCTCTGGCAATATTTGCTGCCGCATACTGTGTGCTATATGGCATCGTTGCTGCAATTGGGATTTCATTTATACAGTTTTCAAACA ATAATTCCATGAGAAACCATTATGTTTTGGGTCTGGCTTTGTTCCTTGGGATATCGATACCACAGTATTTTGTCAGCAACACCACTGGGGATGGACATGG ACCAGTTAGAGCAGATGGTGGATGGTTCAATGACATATTGAATACAGTTTTCTCATCACCTCCAACGGTAGCAATGATTGTTGGGACATTGCTTGATAAC CTATTGGAAGCAAAGAAGAACGCCACCGACCGAGGAATTCCATGGTGGAAGCCTTTCCAGAACAGGAAGGGTGATAGTAGAAGTGACGAGTACTACAGTA TGCCTATCAGGATGAATGAGTGGATGCCCACCAGATATCTTTGA
AA sequence Show only first row Show all	>Potri.014G035800.9 pacid=42763730 polypeptide=Potri.014G035800.9.p locus=Potri.014G035800 ID=Potri.014G035800.9.v4.1 annot-version=v4.1 MGETAHTHQQPPPPQAAAAPPPSSLAFSKGPSWAPAEQLHQLQYCIQSNPPWYQTCLLAFQHYIVMLGTTVLITRTLVTQMGGEPGDAARVIQTLVFMSG INTLLQTMIGTRLPTVMGPSYAFVLPVLSIIRDYNDETFSKDHDRFVDIMRTIQGSLIVSSFVNIILGYSKGWGTLTRFFSPITIVPVVCVVGLGLFMRG FPLLANCVELGLPMLIVLVICQYLKRFHPSVHPVLEMFGLLICIGIIWAFAAILTVAGAYNNVGYQTKQSCRTDRSYLVSSSPWVRVPYPFQWGAPKFRA SHVFGMIGAALVSSAESTGTFFAASRLAGATSPPAHVLSRSIGLQGVGLLLNGIFGAAVGTTASVENVGLLGLTHIGSRRVVQVSTAFMFFFSIFGKFGA LFASIPLAIFAAAYCVLYGIVAAIGISFIQFSNNNSMRNHYVLGLALFLGISIPQYFVSNTTGDGHGPVRADGGWFNDILNTVFSSPPTVAMIVGTLLDN LLEAKKNATDRGIPWWKPFQNRKGDSRSDEYYSMPIRMNEWMPTRYL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G26510		PDE135	pigment defective embryo 135, ...		Potri.014G035800 [exp]	0	1	PDE135.1
AT2G27990	HD	PNF, BLH8	POUND-FOOLISH, BEL1-like homeo...		Potri.004G213300 [exp]	2.00	0.8253
AT3G47590			alpha/beta-Hydrolases superfam...		Potri.013G032500 [exp]	3.16	0.7445
AT1G27660	bHLH	bHLH110	basic helix-loop-helix (bHLH) ...		Potri.005G230800 [exp]	3.46	0.7948
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Potri.006G036500 [exp]	3.87	0.7406
AT1G17455		ELF4-L4	ELF4-like 4 (.1.2)		Potri.006G143800 [exp]	5.65	0.7390
AT4G35900	bZIP	ATBZIP14, FD-1,...	Basic-leucine zipper (bZIP) tr...		Potri.005G243400 [exp]	6.32	0.7463
AT3G60670			PLATZ transcription factor fam...		Potri.002G144900 [exp]	9.48	0.7446
AT1G71980			Protease-associated (PA) RING/...		Potri.013G111500 [exp]	9.79	0.7571
AT3G10910			RING/U-box superfamily protein...		Potri.019G057700 [exp]	11.61	0.7625
AT4G04970		ATGSL01, ATGSL1	GLUCAN SYNTHASE LIKE-1, GLUCAN...		Potri.011G052400 [exp]	13.11	0.7653

Compare expression of checked genes

Potri.014G035800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.