Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47670 922 / 0 Transmembrane amino acid transporter family protein (.1) AT4G35180 350 / 2e-115 LHT7 LYS/HIS transporter 7 (.1) AT1G24400 296 / 2e-95 ATLHT2, AATL2, LHT2 ARABIDOPSIS LYSINE HISTIDINE TRANSPORTER 2, AMINO ACID TRANSPORTER-LIKE PROTEIN 2, lysine histidine transporter 2 (.1) AT5G40780 281 / 1e-89 LHT1, LTH1 lysine histidine transporter 1 (.1.2) AT1G67640 280 / 8e-89 Transmembrane amino acid transporter family protein (.1) AT1G48640 273 / 4e-86 Transmembrane amino acid transporter family protein (.1) AT1G61270 271 / 3e-85 Transmembrane amino acid transporter family protein (.1) AT1G25530 264 / 8e-83 Transmembrane amino acid transporter family protein (.1) AT3G01760 256 / 2e-79 Transmembrane amino acid transporter family protein (.1) AT1G71680 230 / 1e-69 Transmembrane amino acid transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G012900 [exp] 595 / 0 AT1G47670 577 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.004G181200 [exp] 523 / 0 AT1G47670 504 / 3e-175 Transmembrane amino acid transporter family protein (.1) Potri.009G140800 [exp] 509 / 5e-177 AT1G47670 509 / 6e-177 Transmembrane amino acid transporter family protein (.1) Potri.004G181100 [exp] 458 / 2e-157 AT1G47670 384 / 2e-128 Transmembrane amino acid transporter family protein (.1) Potri.004G181000 [exp] 446 / 1e-153 AT1G47670 405 / 5e-138 Transmembrane amino acid transporter family protein (.1) Potri.001G335300 [exp] 302 / 2e-97 AT5G40780 752 / 0.0 lysine histidine transporter 1 (.1.2) Potri.010G128300 [exp] 287 / 8e-92 AT1G25530 687 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.001G335200 [exp] 282 / 9e-90 AT5G40780 697 / 0.0 lysine histidine transporter 1 (.1.2) Potri.008G179000 [exp] 280 / 8e-89 AT1G24400 654 / 0.0 ARABIDOPSIS LYSINE HISTIDINE TRANSPORTER 2, AMINO ACID TRANSPORTER-LIKE PROTEIN 2, lysine histidine transporter 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032751 [exp] 957 / 0 AT1G47670 922 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10011668 [exp] 955 / 0 AT1G47670 918 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10003338 [exp] 551 / 0 AT1G47670 565 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10025113 [exp] 535 / 0 AT1G47670 529 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10023971 [exp] 533 / 0 AT1G47670 526 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10015997 [exp] 424 / 5e-144 AT1G47670 450 / 2e-154 Transmembrane amino acid transporter family protein (.1) Lus10022642 [exp] 390 / 5e-131 AT4G35180 431 / 7e-148 LYS/HIS transporter 7 (.1) Lus10003339 [exp] 382 / 7e-128 AT1G47670 410 / 9e-140 Transmembrane amino acid transporter family protein (.1) Lus10022329 [exp] 308 / 7e-100 AT5G40780 798 / 0.0 lysine histidine transporter 1 (.1.2) Lus10041581 [exp] 308 / 9e-100 AT5G40780 798 / 0.0 lysine histidine transporter 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [poplar] [flax] APC PF01490 [poplar] [flax] Aa_trans Transmembrane amino acid transporter protein
Representative CDS sequence Show only first row Show all	>Potri.014G036500.1 pacid=42764227 polypeptide=Potri.014G036500.1.p locus=Potri.014G036500 ID=Potri.014G036500.1.v4.1 annot-version=v4.1 ATGGAGGAGAGACCAGAGACGGAGTTAATATCCATTCCAGCAACGCCACGTGCATCGACGCCAGAGATACTGACTCCTTCAGGTCAGAGGTCACCAAGGC CAGCTTCAAAGGAAGCGAAATCATCGACAGCATGGACACCGACATCGTTTATCTCGCCGAGGTTTTTGAGCCCAATAGGGACGCCAATGAAGAGGGTGTT GATTAACATGAAGGGTTATTTAGAGGAAGTGGGTCATTTGACTAAGCTAAATCCGCAAGATGCTTGGCTTCCTATCACCGAGTCTCGTAATGGGAATGCT CATTATGCGGCGTTTCATAACTTGAATGCCGGTGTTGGGTTTCAAGCCCTTGTTTTGCCTGTTGCCTTTGCTTTTCTTGGCTGGAGTTGGGGAATACTGT CCTTAACCATAGCCTACTGCTGGCAACTTTACACTCTATGGATTCTGGTTCAGCTGCATGAAGCTGTTCCCGGGAAGAGATACAACAGATATGTGGAGCT TGCACAAGCTGCATTCGGGGAAAGATTAGGCCTCTGGCTTGCGCTCTTCCCAACAGTTTATTTGTCAGCTGGAACCGCAACAGCTTTGATTCTTATAGGA GGGGAGACAATGAAATTATTCTTCCAAATAGTTTGTGGGCCACTCTGTTCATCAAATCCCCTAACAACAGTTGAGTGGTACCTGGTATTCACTTCTCTAT GCATCGTTCTGTCCCAGCTCCCAAATCTGAATTCAATTGCGGGACTTTCACTCATCGGTGCCATAACAGCTATCACTTACTCTACCATGGTGTGGGTTCT TTCTGTTAGCCAACAAAGGCCACCTACAATCTCTTATGAACCCCTTTCTTTGCCATCCTTTAGTGCTTCTGTCTTTTCAGTCATGAATGCTCTTGGGATT GTTGCCTTTGCTTTCAGAGGGCACAATCTAGCCATGGAGATTCAGGCAACAATGCCATCAACATTTAAGCACCCAGCTCATGTGCCCATGTGGAAAGGAG CCAAAGTTGCCTATTTCTTTATTGCTTTGTGCCTGTTTCCAGTCGCCATTGGAGGCTTTTGGGCTTATGGGAACCTTATGCCTTCAGGAGGAATTCTCAA TGCCCTGTATGGGTTTCACAGCCACGACATTCCTCGAGGACTTCTTGCAATGACTTTTCTTCTCGTGGTGTTCAATTGCCTAAGCAGCTTCCAGATATAT TCAATGCCTGTTTTTGACAGTTTTGAAGCTAGCTATACCACCCGAACAAACCGACCATGCTCCATTTGGGTTCGATCCGGCTTCCGGGTGTTCTATGGAT TCATCTCTTTCTTCATTGGGGTAGCACTCCCTTTCCTCTCCAGTCTTGCTGGTCTCTTAGGAGGATTAACACTTCCAGTCACATTCGCTTACCCTTGCTT CATGTGGGTTCTCATAAAAAAACCTTCCAAATACAGTTTCAATTGGTACTTCAACTGGATCCTTGGTTGGTTAGGTATTGCTTTTAGCTTGGCCTTCTCC ATTGGAGGTGTCTGGAGCATGGTGAACAGTGGACTTAAATTAAAATTCTTCAAGCCACCAAATTAA
AA sequence Show only first row Show all	>Potri.014G036500.1 pacid=42764227 polypeptide=Potri.014G036500.1.p locus=Potri.014G036500 ID=Potri.014G036500.1.v4.1 annot-version=v4.1 MEERPETELISIPATPRASTPEILTPSGQRSPRPASKEAKSSTAWTPTSFISPRFLSPIGTPMKRVLINMKGYLEEVGHLTKLNPQDAWLPITESRNGNA HYAAFHNLNAGVGFQALVLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGERLGLWLALFPTVYLSAGTATALILIG GETMKLFFQIVCGPLCSSNPLTTVEWYLVFTSLCIVLSQLPNLNSIAGLSLIGAITAITYSTMVWVLSVSQQRPPTISYEPLSLPSFSASVFSVMNALGI VAFAFRGHNLAMEIQATMPSTFKHPAHVPMWKGAKVAYFFIALCLFPVAIGGFWAYGNLMPSGGILNALYGFHSHDIPRGLLAMTFLLVVFNCLSSFQIY SMPVFDSFEASYTTRTNRPCSIWVRSGFRVFYGFISFFIGVALPFLSSLAGLLGGLTLPVTFAYPCFMWVLIKKPSKYSFNWYFNWILGWLGIAFSLAFS IGGVWSMVNSGLKLKFFKPPN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G47670			Transmembrane amino acid trans...		Potri.014G036500 [exp]	0	1
AT2G21050		LAX2	like AUXIN RESISTANT 2 (.1)		Potri.009G132100 [exp]	2.00	0.9237	PtrAUX6,Pt-LAX5.1
AT2G21050		LAX2	like AUXIN RESISTANT 2 (.1)		Potri.004G172800 [exp]	2.44	0.9302	PtrAUX5
AT3G54030			Protein kinase protein with te...		Potri.016G105800 [exp]	3.00	0.9276
AT5G64080		AtXYP1	xylogen protein 1, Bifunctiona...		Potri.003G020200 [exp]	5.47	0.9226
AT2G41820			Leucine-rich repeat protein ki...		Potri.016G055400 [exp]	6.63	0.9131
AT1G70710		CEL1 ,AtGH9B1	CELLULASE 1, glycosyl hydrolas...		Potri.008G132700 [exp]	6.63	0.8903	Pt-CEL1.3
AT5G14070		ROXY2	Thioredoxin superfamily protei...		Potri.001G060600 [exp]	7.74	0.8846
AT1G62050			Ankyrin repeat family protein ...		Potri.004G013500 [exp]	7.74	0.8959
AT5G51560			Leucine-rich repeat protein ki...		Potri.012G128700 [exp]	8.94	0.9170
AT2G24960			unknown protein		Potri.004G172900 [exp]	9.79	0.9004

Compare expression of checked genes

Potri.014G036500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.