Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42630 209 / 7e-66 GARP KAN4, KANADI4, ATS KANADI 4, ABERRANT TESTA SHAPE, Homeodomain-like superfamily protein (.1.2) AT1G32240 133 / 1e-35 GARP KAN2, KANADI2 KANADI 2, Homeodomain-like superfamily protein (.1) AT4G17695 130 / 4e-35 GARP KAN3, KANADI3 KANADI 3, Homeodomain-like superfamily protein (.1) AT5G16560 125 / 1e-32 GARP KAN1, KAN KANADI 1, KANADI, Homeodomain-like superfamily protein (.1) AT1G14600 88 / 5e-20 GARP Homeodomain-like superfamily protein (.1) AT2G42660 87 / 1e-19 GARP Homeodomain-like superfamily protein (.1) AT2G02060 87 / 2e-19 GARP Homeodomain-like superfamily protein (.1) AT2G38300 87 / 3e-19 GARP myb-like HTH transcriptional regulator family protein (.1) AT2G40260 87 / 6e-19 GARP Homeodomain-like superfamily protein (.1) AT4G04580 77 / 6e-17 GARP Homeodomain-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G130200 [exp] 430 / 9e-152 AT5G42630 199 / 6e-62 KANADI 4, ABERRANT TESTA SHAPE, Homeodomain-like superfamily protein (.1.2) Potri.003G096300 [exp] 132 / 3e-35 AT1G32240 224 / 1e-69 KANADI 2, Homeodomain-like superfamily protein (.1) Potri.012G042100 [exp] 129 / 1e-33 AT5G16560 193 / 6e-57 KANADI 1, KANADI, Homeodomain-like superfamily protein (.1) Potri.015G031600 [exp] 128 / 3e-33 AT5G16560 176 / 1e-50 KANADI 1, KANADI, Homeodomain-like superfamily protein (.1) Potri.004G082400 [exp] 127 / 5e-33 AT5G16560 233 / 7e-72 KANADI 1, KANADI, Homeodomain-like superfamily protein (.1) Potri.017G137600 [exp] 127 / 6e-33 AT5G16560 256 / 8e-81 KANADI 1, KANADI, Homeodomain-like superfamily protein (.1) Potri.001G137600 [exp] 123 / 7e-32 AT1G32240 216 / 6e-67 KANADI 2, Homeodomain-like superfamily protein (.1) Potri.008G071700 [exp] 99 / 3e-23 AT2G40260 166 / 2e-47 Homeodomain-like superfamily protein (.1) Potri.009G075100 [exp] 93 / 3e-21 AT2G38300 162 / 4e-47 myb-like HTH transcriptional regulator family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032746 [exp] 191 / 3e-58 AT5G42630 194 / 3e-60 KANADI 4, ABERRANT TESTA SHAPE, Homeodomain-like superfamily protein (.1.2) Lus10011660 [exp] 139 / 7e-39 AT5G42630 138 / 2e-39 KANADI 4, ABERRANT TESTA SHAPE, Homeodomain-like superfamily protein (.1.2) Lus10035387 [exp] 128 / 2e-35 AT1G32240 222 / 1e-71 KANADI 2, Homeodomain-like superfamily protein (.1) Lus10030989 [exp] 130 / 5e-34 AT1G32240 229 / 6e-71 KANADI 2, Homeodomain-like superfamily protein (.1) Lus10029225 [exp] 87 / 5e-20 AT2G38300 110 / 5e-30 myb-like HTH transcriptional regulator family protein (.1) Lus10007279 [exp] 85 / 8e-20 AT2G38300 107 / 1e-28 myb-like HTH transcriptional regulator family protein (.1) Lus10040945 [exp] 89 / 2e-19 AT2G40260 159 / 2e-45 Homeodomain-like superfamily protein (.1) Lus10002207 [exp] 86 / 6e-19 AT2G38300 171 / 9e-51 myb-like HTH transcriptional regulator family protein (.1) Lus10012239 [exp] 86 / 8e-19 AT2G38300 170 / 3e-50 myb-like HTH transcriptional regulator family protein (.1) Lus10001149 [exp] 86 / 8e-19 AT2G40260 119 / 1e-30 Homeodomain-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.014G037200.1 pacid=42763534 polypeptide=Potri.014G037200.1.p locus=Potri.014G037200 ID=Potri.014G037200.1.v4.1 annot-version=v4.1 ATGTTCTCAAGTTCAAAACACATAATTATGAGAAGTGTATCACCTTTTCCTGATCTTTCACTGCAGATCAGCCCGCCATCAGTGGAAGCTAAAGAAACGG GCTATGATGGAGGATTAACAAGAAAAGCCCTTTGCAGTGATAGGAGCTCAACTACAGATTCTGGTAGTAGTGGAAGTGATTTAAGCCATGAAAATGGCTT TCTCAATCAAGAAAGGAGTTATAATCTTGGTCCTAGTGAACCAACTTTGAGCTTAGGGTTTGATATGGCAGATTTGAGTTCTCAAACACTTCAACTACCA AGAAATCTTAATCACCACCACCACCAACCCCAAATCTATGGGCGTAATTTCAAGAGAAGTGCAAGAATGATTAATGGAGTGAAGAGAAGCGTAAGGGCTC CTAGAATGAGATGGACCACAACTCTCCATGCCCATTTTGTTCATGCGGTCCGGCTTCTTGGTGGCCATGAAAGAGCAACACCAAAATCAGTCTTAGAGTT GATGAATGTGAAGGATCTTACCCTAGCTCATGTGAAGAGTCACTTGCAGATGTATAGAACAGTGAAGAGCACTGACAGAGGACCAGGTCAAGAGCTGACA GATATGGGTTTGAGCCAAAGGGCAGGGATTCTTGAGGTGGACGCTTTAGGTTTATCTAGTGGAAAAGCTGATGCCAACAACCTTCCTCAACCTCTCAATA ATCCACCACCATCACCACCACCACCACCACTATCTTCTACACAAAAAAATCAAAGAAATTCAGGGCCATCATCAATATTGGAGGGAGATGAGAAAAATAT ATCAAGTCTTGAGGCTCTGACATATGTTAATGTCGAAGCACATGACCATTCTAAGGAGGACGGACACGCGGAAGCCCTCCACATGGCTGCTAATTTGAAG GAGAGATTGGACTCTAGCTCCTCGTCATCTTCAGATATGTTGCTTAACCTAGAGTTCACCCTTGGAAGGCCAAGTTGGCAATTGGACTATGCTGAAACTA CAAATGAGCTAACCCTTCTCAAGTGTTAA
AA sequence Show only first row Show all	>Potri.014G037200.1 pacid=42763534 polypeptide=Potri.014G037200.1.p locus=Potri.014G037200 ID=Potri.014G037200.1.v4.1 annot-version=v4.1 MFSSSKHIIMRSVSPFPDLSLQISPPSVEAKETGYDGGLTRKALCSDRSSTTDSGSSGSDLSHENGFLNQERSYNLGPSEPTLSLGFDMADLSSQTLQLP RNLNHHHHQPQIYGRNFKRSARMINGVKRSVRAPRMRWTTTLHAHFVHAVRLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKSTDRGPGQELT DMGLSQRAGILEVDALGLSSGKADANNLPQPLNNPPPSPPPPPLSSTQKNQRNSGPSSILEGDEKNISSLEALTYVNVEAHDHSKEDGHAEALHMAANLK ERLDSSSSSSSDMLLNLEFTLGRPSWQLDYAETTNELTLLKC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G42630	GARP	KAN4, KANADI4, ...	KANADI 4, ABERRANT TESTA SHAPE...		Potri.014G037200 [exp]	0	1
					Potri.003G154150 [exp]	4.35	0.8413
AT5G56840	MYB		myb-like transcription factor ...		Potri.006G150300 [exp]	13.41	0.8322
AT2G38300	GARP		myb-like HTH transcriptional r...		Potri.016G121800 [exp]	14.14	0.8044
AT2G31400		GUN1	genomes uncoupled 1 (.1)		Potri.002G193900 [exp]	14.79	0.8316
					Potri.011G072616 [exp]	17.08	0.8273
AT4G16120		ATSEB1, COBL7	ARABIDOPSIS THALIANA SEC61 BET...		Potri.014G125300 [exp]	18.33	0.7951
AT1G11330			S-locus lectin protein kinase ...		Potri.011G037900 [exp]	18.33	0.7570
AT1G03840	C2H2ZnF	MGP	Magpie, C2H2 and C2HC zinc fin...		Potri.005G027200 [exp]	18.97	0.8258
AT3G23160			Protein of unknown function (D...		Potri.010G074000 [exp]	21.63	0.7930
AT5G49760			Leucine-rich repeat protein ki...		Potri.004G232400 [exp]	22.27	0.8122

Compare expression of checked genes

Potri.014G037200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.