Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44840 196 / 3e-63 AP2_ERF ATERF13, EREBP ethylene-responsive element binding factor 13 (.1) AT4G17500 159 / 3e-48 AP2_ERF ATERF-1, AtERF1 ethylene responsive element binding factor 1 (.1) AT5G47220 155 / 4e-47 AP2_ERF ATERF-2, ERF2, ATERF2 ETHYLENE RESPONSE FACTOR- 2, ethylene responsive element binding factor 2 (.1) AT5G51190 104 / 1e-27 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT3G23240 104 / 2e-27 AP2_ERF ERF1, ATERF1 ethylene response factor 1 (.1) AT5G61890 103 / 1e-26 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT3G23230 99 / 2e-26 AP2_ERF ERF98 Integrase-type DNA-binding superfamily protein (.1) AT5G43410 98 / 7e-26 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G13330 99 / 1e-25 AP2_ERF RAP2.6L related to AP2 6l (.1) AT5G47230 100 / 6e-25 AP2_ERF ATERF5, ATERF-5, ERF5 ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR- 5, ethylene responsive element binding factor 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G081200 [exp] 175 / 2e-54 AT4G17500 211 / 1e-67 ethylene responsive element binding factor 1 (.1) Potri.003G150700 [exp] 174 / 3e-54 AT4G17500 190 / 9e-60 ethylene responsive element binding factor 1 (.1) Potri.001G154100 [exp] 169 / 5e-52 AT4G17500 221 / 2e-71 ethylene responsive element binding factor 1 (.1) Potri.014G046700 [exp] 166 / 2e-51 AT2G44840 168 / 3e-52 ethylene-responsive element binding factor 13 (.1) Potri.001G079900 [exp] 164 / 3e-50 AT4G17500 186 / 2e-58 ethylene responsive element binding factor 1 (.1) Potri.014G047000 [exp] 145 / 1e-43 AT2G44840 160 / 2e-49 ethylene-responsive element binding factor 13 (.1) Potri.014G046900 [exp] 137 / 4e-40 AT2G44840 164 / 2e-50 ethylene-responsive element binding factor 13 (.1) Potri.014G046800 [exp] 129 / 4e-38 AT2G44840 130 / 7e-39 ethylene-responsive element binding factor 13 (.1) Potri.004G051700 [exp] 119 / 8e-34 AT5G47220 111 / 1e-30 ETHYLENE RESPONSE FACTOR- 2, ethylene responsive element binding factor 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040165 [exp] 168 / 4e-51 AT4G17500 260 / 2e-86 ethylene responsive element binding factor 1 (.1) Lus10004368 [exp] 164 / 1e-49 AT4G17500 268 / 7e-90 ethylene responsive element binding factor 1 (.1) Lus10016210 [exp] 144 / 6e-43 AT2G44840 154 / 7e-47 ethylene-responsive element binding factor 13 (.1) Lus10016211 [exp] 142 / 4e-42 AT2G44840 158 / 2e-48 ethylene-responsive element binding factor 13 (.1) Lus10016225 [exp] 141 / 7e-42 AT2G44840 154 / 4e-47 ethylene-responsive element binding factor 13 (.1) Lus10016209 [exp] 141 / 8e-42 AT2G44840 148 / 1e-44 ethylene-responsive element binding factor 13 (.1) Lus10029333 [exp] 141 / 9e-42 AT2G44840 147 / 1e-44 ethylene-responsive element binding factor 13 (.1) Lus10016212 [exp] 139 / 8e-41 AT2G44840 146 / 1e-43 ethylene-responsive element binding factor 13 (.1) Lus10029331 [exp] 139 / 1e-40 AT2G44840 147 / 4e-44 ethylene-responsive element binding factor 13 (.1) Lus10029334 [exp] 138 / 1e-40 AT2G44840 152 / 1e-46 ethylene-responsive element binding factor 13 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [poplar] [flax] MBD-like PF00847 [poplar] [flax] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Potri.014G046600.1 pacid=42764401 polypeptide=Potri.014G046600.1.p locus=Potri.014G046600 ID=Potri.014G046600.1.v4.1 annot-version=v4.1 ATGTTTGGAGAGAAGAGCTTGGAATCAGGCTTTGATGTTCTTGAATGCAATATTAATACTGTTGCCAGTACCAGTAATGTTAACGCACCAACATTTTACA AGAGCCTCAGCTTTAGTAATATTTATTCAACAGAAAGCTGGGGTGATTTGCCATTAAAACAAGATGATTCAGAGGATATGATCGTTTACAATGCTCTCCG AGATGCTGTTAACTTCGGATGGCTTCCATCAATATTGTCGTTGCAATCTAATATGACCACGACGACAGAAGAGTTTCCACAAACAGCTGTTCCATTGGAA GTGGCACCGCGCGAGTCTGGACCACAACCGCTGAAGGAAAAGGGATTGCAGTATAAGGGTGTGAGAAGGAGGCCATGGGGAAAATATGCGGCAGAGATTA GGGATCCTAAGAAGAATGGAGCGAGGATGTGGCTCGGGACTTATGAGACGCCTGAGGATGCTGCACTAGCTTACGATCGAGCTGCTTTTAAAATGCGTGG CTCGAAGGCTAAGCTTAATTTCCCTCATCTGATCGGATCCAACAATAACTGGGAACCAACTAGGGTGACTTCTAAGAAGCGGAGTTCACCAGAGCCTTCA TCTTCTATATCTATTTCAGATTATGACTCACCACGTTGGACGAAGCAAAGCAAGATCAGTTCTGGGATTTGTTTCCACTGA
AA sequence Show only first row Show all	>Potri.014G046600.1 pacid=42764401 polypeptide=Potri.014G046600.1.p locus=Potri.014G046600 ID=Potri.014G046600.1.v4.1 annot-version=v4.1 MFGEKSLESGFDVLECNINTVASTSNVNAPTFYKSLSFSNIYSTESWGDLPLKQDDSEDMIVYNALRDAVNFGWLPSILSLQSNMTTTTEEFPQTAVPLE VAPRESGPQPLKEKGLQYKGVRRRPWGKYAAEIRDPKKNGARMWLGTYETPEDAALAYDRAAFKMRGSKAKLNFPHLIGSNNNWEPTRVTSKKRSSPEPS SSISISDYDSPRWTKQSKISSGICFH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Potri.014G046600 [exp]	0	1
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Potri.014G047000 [exp]	1.00	0.9942	ERF7
AT5G43650	bHLH	BHLH92, bHLH092	basic helix-loop-helix (bHLH) ...		Potri.010G077000 [exp]	2.00	0.9875
AT1G53903			Protein of unknown function (D...		Potri.001G163400 [exp]	3.00	0.9848
AT3G47570			Leucine-rich repeat protein ki...		Potri.011G102800 [exp]	3.00	0.9670
AT1G58290		AtHEMA1, HEMA1	Arabidopsis thaliana hemA 1, G...		Potri.009G080600 [exp]	4.24	0.9742
AT4G37850	bHLH	bHLH025	basic helix-loop-helix (bHLH) ...		Potri.005G095250 [exp]	5.65	0.9824
AT3G50940			P-loop containing nucleoside t...		Potri.007G019700 [exp]	5.83	0.9400
AT1G71450	AP2_ERF		Integrase-type DNA-binding sup...		Potri.003G054100 [exp]	6.48	0.9583
AT1G43040			SAUR-like auxin-responsive pro...		Potri.002G000600 [exp]	8.36	0.9764
AT5G37490			ARM repeat superfamily protein...		Potri.015G031000 [exp]	8.48	0.9678

Compare expression of checked genes

Potri.014G046600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.