Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60270 111 / 7e-31 Cupredoxin superfamily protein (.1) AT3G60280 109 / 1e-29 UCC3 uclacyanin 3 (.1) AT5G07475 103 / 1e-27 Cupredoxin superfamily protein (.1) AT2G32300 98 / 6e-25 UCC1 uclacyanin 1 (.1) AT2G44790 93 / 2e-23 UCC2 uclacyanin 2 (.1) AT1G72230 91 / 4e-23 Cupredoxin superfamily protein (.1) AT2G26720 91 / 7e-23 Cupredoxin superfamily protein (.1) AT2G31050 90 / 1e-22 Cupredoxin superfamily protein (.1) AT3G17675 85 / 2e-21 Cupredoxin superfamily protein (.1) AT1G22480 85 / 8e-21 Cupredoxin superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G080700 [exp] 112 / 2e-31 AT5G07475 164 / 1e-51 Cupredoxin superfamily protein (.1) Potri.002G101300 [exp] 110 / 1e-30 AT1G72230 131 / 6e-39 Cupredoxin superfamily protein (.1) Potri.003G150300 [exp] 107 / 2e-29 AT5G07475 178 / 2e-57 Cupredoxin superfamily protein (.1) Potri.002G101200 [exp] 108 / 3e-29 AT1G72230 129 / 2e-37 Cupredoxin superfamily protein (.1) Potri.006G067400 [exp] 98 / 7e-26 AT5G20230 112 / 2e-31 SENESCENCE ASSOCIATED GENE 14, BLUE COPPER BINDING PROTEIN, blue-copper-binding protein (.1) Potri.007G120200 [exp] 97 / 1e-24 AT2G32300 118 / 3e-32 uclacyanin 1 (.1) Potri.018G129400 [exp] 92 / 1e-23 AT5G20230 114 / 6e-32 SENESCENCE ASSOCIATED GENE 14, BLUE COPPER BINDING PROTEIN, blue-copper-binding protein (.1) Potri.002G161300 [exp] 90 / 7e-23 AT5G26330 146 / 5e-45 Cupredoxin superfamily protein (.1) Potri.006G067300 [exp] 89 / 2e-21 AT5G20230 97 / 2e-24 SENESCENCE ASSOCIATED GENE 14, BLUE COPPER BINDING PROTEIN, blue-copper-binding protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008720 [exp] 114 / 5e-32 AT1G72230 140 / 2e-42 Cupredoxin superfamily protein (.1) Lus10020944 [exp] 114 / 1e-31 AT1G72230 141 / 1e-42 Cupredoxin superfamily protein (.1) Lus10025580 [exp] 110 / 2e-30 AT1G72230 112 / 4e-31 Cupredoxin superfamily protein (.1) Lus10027043 [exp] 110 / 4e-30 AT1G72230 112 / 4e-31 Cupredoxin superfamily protein (.1) Lus10012085 [exp] 107 / 3e-29 AT5G07475 142 / 4e-43 Cupredoxin superfamily protein (.1) Lus10027143 [exp] 101 / 1e-26 AT2G32300 137 / 9e-40 uclacyanin 1 (.1) Lus10025752 [exp] 92 / 5e-23 AT5G20230 101 / 1e-26 SENESCENCE ASSOCIATED GENE 14, BLUE COPPER BINDING PROTEIN, blue-copper-binding protein (.1) Lus10007028 [exp] 86 / 4e-21 AT5G26330 92 / 8e-24 Cupredoxin superfamily protein (.1) Lus10007026 [exp] 86 / 4e-21 AT2G32300 96 / 4e-25 uclacyanin 1 (.1) Lus10010533 [exp] 85 / 1e-20 AT5G26330 174 / 1e-55 Cupredoxin superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [poplar] [flax] CU_oxidase PF02298 [poplar] [flax] Cu_bind_like Plastocyanin-like domain
Representative CDS sequence Show only first row Show all	>Potri.014G049600.1 pacid=42763626 polypeptide=Potri.014G049600.1.p locus=Potri.014G049600 ID=Potri.014G049600.1.v4.1 annot-version=v4.1 ATGGCCAATATTGCATCTGCTCTCCTAATTCTTGTGCTTGCCGCTCCAGCAGCTTATGCTGCTACAACGTACACTGTTGGTGACTCGTCCGGCTGGAGTA CCACGTTCGGAGATTACACCACTTGGGTTAGTGGTAAAACATTCACTGTTGGTGACTCTCTTCTGTTCAAGTATAGCTCCACACACACTGTGGCTGAAGT ATCGAAAGGCGACTACGATAGTTGCAGCACGAGTAATCTCGGGAAAACCTATACTGATGGAAGCTCAACAGTACCCTTGTCCACGGCTGGTCCAATGTAC TTCATTTGTCCCACATCTGGTCACTGTTCCGGCGGCATGAAGCTAGCAATCACCGTTGTCGCAGCCAGTGGCACCCCAAGTACCCCCACCACACCTCCAG TCGACGATGGTTCAACCACTCCACCAACTACATCTGGCTCGCCACCTACAACCCCATCAACCACCGTCACACCACCACCACCATCGAAGAGTAATAATGG AGCCACCAGCATTTTATATAACATGATGCTTGGTGTCTTTCTTGTATTCGGAACAACTGTTGCATTGATGGGCCAGTGA
AA sequence Show only first row Show all	>Potri.014G049600.1 pacid=42763626 polypeptide=Potri.014G049600.1.p locus=Potri.014G049600 ID=Potri.014G049600.1.v4.1 annot-version=v4.1 MANIASALLILVLAAPAAYAATTYTVGDSSGWSTTFGDYTTWVSGKTFTVGDSLLFKYSSTHTVAEVSKGDYDSCSTSNLGKTYTDGSSTVPLSTAGPMY FICPTSGHCSGGMKLAITVVAASGTPSTPTTPPVDDGSTTPPTTSGSPPTTPSTTVTPPPPSKSNNGATSILYNMMLGVFLVFGTTVALMGQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G60270			Cupredoxin superfamily protein...		Potri.014G049600 [exp]	0	1
AT5G67400		RHS19	root hair specific 19 (.1)		Potri.017G064100 [exp]	2.64	0.8210
					Potri.002G070101 [exp]	4.00	0.7670
AT1G21460		SWEET1, AtSWEET...	Nodulin MtN3 family protein (....		Potri.002G072600 [exp]	8.66	0.7019
AT4G33790		G7, FAR3, CER4	FATTY ACID REDUCTASE 3, ECERIF...		Potri.009G145000 [exp]	16.85	0.7027
AT3G12830			SAUR-like auxin-responsive pro...		Potri.007G067800 [exp]	34.69	0.6072
AT1G80580	AP2_ERF		Integrase-type DNA-binding sup...		Potri.017G053700 [exp]	40.39	0.6024
AT5G40990		GLIP1	GDSL lipase 1 (.1)		Potri.013G065100 [exp]	69.57	0.6246
AT1G14590			Nucleotide-diphospho-sugar tra...		Potri.012G037300 [exp]	73.49	0.6526
					Potri.007G103500 [exp]	110.99	0.5868
AT2G05940		RIPK	RPM1-induced protein kinase, P...		Potri.006G219300 [exp]	110.99	0.6150

Compare expression of checked genes

Potri.014G049600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.