Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32730 266 / 4e-80 MYB ATMYB3R-1, PC-MYB1, ATMYB3R1 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2) AT4G00540 243 / 2e-74 MYB MYB3R-2, PC-MYB2, ATMYB3R2 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-2, myb domain protein 3r2 (.1.2) AT5G11510 250 / 5e-74 MYB ATMYB3R-4, AtMYB3R4 myb domain protein 3R4, myb domain protein 3r-4 (.1.2) AT5G02320 240 / 3e-72 MYB MYB3R-5, ATMYB3R5 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3R5, myb domain protein 3r-5 (.1.2) AT3G09370 237 / 1e-71 MYB ATMYB3R-3, ATMYB3R3 myb domain protein 3R3, myb domain protein 3r-3 (.1.2) AT3G27785 150 / 9e-40 MYB PGA37, ATMYB118 PLANT GROWTH ACTIVATOR 37, myb domain protein 118 (.1) AT4G18770 145 / 2e-38 MYB ATMYB98 myb domain protein 98 (.1) AT5G11050 139 / 4e-36 MYB ATMYB64 myb domain protein 64 (.1) AT5G58850 139 / 5e-36 MYB ATMYB119 myb domain protein 119 (.1) AT3G09230 134 / 3e-34 MYB ATMYB1 myb domain protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G241700 [exp] 266 / 2e-78 AT5G11510 696 / 0.0 myb domain protein 3R4, myb domain protein 3r-4 (.1.2) Potri.018G038000 [exp] 262 / 5e-77 AT4G32730 748 / 0.0 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2) Potri.006G085600 [exp] 245 / 4e-74 AT5G02320 477 / 9e-164 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3R5, myb domain protein 3r-5 (.1.2) Potri.003G123800 [exp] 227 / 3e-68 AT3G09370 231 / 3e-70 myb domain protein 3R3, myb domain protein 3r-3 (.1.2) Potri.012G082000 [exp] 152 / 1e-40 AT4G18770 268 / 2e-85 myb domain protein 98 (.1) Potri.015G077700 [exp] 144 / 1e-37 AT4G18770 300 / 4e-98 myb domain protein 98 (.1) Potri.005G118500 [exp] 142 / 3e-37 AT4G18770 234 / 2e-72 myb domain protein 98 (.1) Potri.001G347200 [exp] 142 / 7e-37 AT3G27785 223 / 8e-68 PLANT GROWTH ACTIVATOR 37, myb domain protein 118 (.1) Potri.009G044100 [exp] 141 / 2e-36 AT5G58850 224 / 5e-68 myb domain protein 119 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011687 [exp] 268 / 2e-78 AT4G32730 502 / 3e-158 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2) Lus10022136 [exp] 262 / 7e-77 AT4G32730 682 / 0.0 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2) Lus10038623 [exp] 255 / 2e-75 AT4G32730 376 / 3e-118 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2) Lus10025351 [exp] 237 / 2e-71 AT3G09370 456 / 8e-157 myb domain protein 3R3, myb domain protein 3r-3 (.1.2) Lus10024394 [exp] 236 / 5e-71 AT3G09370 456 / 8e-157 myb domain protein 3R3, myb domain protein 3r-3 (.1.2) Lus10008010 [exp] 210 / 5e-62 AT5G02320 237 / 3e-72 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3R5, myb domain protein 3r-5 (.1.2) Lus10037898 [exp] 167 / 3e-44 AT4G32730 266 / 4e-77 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2) Lus10027695 [exp] 145 / 2e-37 AT4G18770 276 / 1e-87 myb domain protein 98 (.1) Lus10042111 [exp] 142 / 6e-37 AT4G18770 249 / 8e-79 myb domain protein 98 (.1) Lus10002384 [exp] 140 / 2e-36 AT4G18770 250 / 7e-79 myb domain protein 98 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain CL0123 [poplar] [flax] HTH PF13921 [poplar] [flax] Myb_DNA-bind_6 Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.014G079300.1 pacid=42762330 polypeptide=Potri.014G079300.1.p locus=Potri.014G079300 ID=Potri.014G079300.1.v4.1 annot-version=v4.1 ATGGTTGAAGAAGTTAAGGAGATCAATTCTAATTCAAAGACAAAGGGTTTAGTTTACTGGACTGGTTTGGTGCCCCATGGTGGCATTCGCAATGCGATTC AAAATCAACAAGGGAGGATGACTGGTCCTACAAGACGATCAAAAAAATGGACAGGGGAGGAGGATAAAATATTAGCTGATGCAGTCAAAAGGTACAATAG CAAAAATTGGAAGAAGATCGCTGAATGTGTTCCTGATAGAACAGATGTTCAGTGCCTGCATCGATGGCAGAAGGTTCTTGACCCTAAACTTGTTAAAGGA CCCTGGAAAAAAGAGGAAGATGATCTCATTCGAGAGCTTGTTGAAAAACATGGAAACAAGAAATGGTCTCAAGTAGCAAAACACTTGACAGGCCGCATAG GCAAGCAATGCCGAGAAAGGTGGCACAACCATTTAAATCCAGATATTAATAGAACTCCATGGACCAAAGAGGAGGAAGCAATTCTCATCAAAGCCCACGG AGCATATGGTAACAAGTGGGCTGAGATCGCAAAGCTTCTGCATGGAAGGACTGAAAATTCAATAAAAAATCATTGGAACTGCTCAGTGAGGAAGAGAATA GAATCATATCCAGCTCGTGGTTTGGACTTTTATAGTTACAAGACAAAAGCAGATGGCAAGAAGCTAGAGGTGGGCAAGCAAAGAAATGATCGGGGTGTGA ACTTGTGCTCAAACGTGGAACCTTGTTCACTGGATTTGGTTCTTGGAAATGTTGGTAGAAGGGAGGGCCAATTGAAGACGTCAGATAATGAAATTTGTAA AGAGTGGAACGATTCAGCAAAGTCCACAGGTAGAACTATAGGTACTAAAGCTACTGATACATGTGTTCTGTCCAGCCAAGATTGCAGAGAAAGTGCCAGT AGTGCATACACATCTGAGTCAACAGACCATTCCTCTGTTAACCAGCCTGGGAAAATCTGTGATATTTCTTTCGGTAGTCTCATGAGGTCTCCATATTCAC AGGAAAGGACTCATGAGACTACAAATACTATCAATTCATTGCCTTCTGAAGCACTTTCTCCGTCTTTGGATCTCTCTCTGAGTACTCCATTCAGTGCACA TGGTTATGATGAAACAATGGATGAACATGAGAAAAATAGAGGGGCAGGAGGGCCTAACACTACGGATAAATTACATCGTGGCTTGTGCTACGAGTCACTC CAGCCAAAGGATTTGAATGTCTTCCTGGAAACCGGTAGTTTTCCCGGTTCAGATTGCTACATCCGCACAGTAGGAGGTCCAGGTTCCTTCTCCACTCCAA TAAGCCGCAATAGAGTGTCTCCTAGTTGTAGCAGTCCAGAATCCAGACTGAGAAGCAAAGCAAGGAGTTTCAAAAGCACGCCATCGATTATAAGGAAGAG AAGTTCTATTACTTTGAGACAAGCTGGCTCATCTGACAAAGATGATAATGGCCTCCGGTCGCTAGGTTCTTGCTCATCTGACAAAGATGATGATGATGAT GATGTGGATCTATTAAACAAGAAGCAGCTTTTCCTTTCTCCTCCGAAATCCAAGAAGCTTGAAACTCCAGAAGAAATGAAGTCTGTAGAAAAACGCCTGG AATACGCTTTTAACATAGAAGGTTAA
AA sequence Show only first row Show all	>Potri.014G079300.1 pacid=42762330 polypeptide=Potri.014G079300.1.p locus=Potri.014G079300 ID=Potri.014G079300.1.v4.1 annot-version=v4.1 MVEEVKEINSNSKTKGLVYWTGLVPHGGIRNAIQNQQGRMTGPTRRSKKWTGEEDKILADAVKRYNSKNWKKIAECVPDRTDVQCLHRWQKVLDPKLVKG PWKKEEDDLIRELVEKHGNKKWSQVAKHLTGRIGKQCRERWHNHLNPDINRTPWTKEEEAILIKAHGAYGNKWAEIAKLLHGRTENSIKNHWNCSVRKRI ESYPARGLDFYSYKTKADGKKLEVGKQRNDRGVNLCSNVEPCSLDLVLGNVGRREGQLKTSDNEICKEWNDSAKSTGRTIGTKATDTCVLSSQDCRESAS SAYTSESTDHSSVNQPGKICDISFGSLMRSPYSQERTHETTNTINSLPSEALSPSLDLSLSTPFSAHGYDETMDEHEKNRGAGGPNTTDKLHRGLCYESL QPKDLNVFLETGSFPGSDCYIRTVGGPGSFSTPISRNRVSPSCSSPESRLRSKARSFKSTPSIIRKRSSITLRQAGSSDKDDNGLRSLGSCSSDKDDDDD DVDLLNKKQLFLSPPKSKKLETPEEMKSVEKRLEYAFNIEG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G32730	MYB	ATMYB3R-1, PC-M...	C-MYB-LIKE TRANSCRIPTION FACTO...		Potri.014G079300 [exp]	0	1
AT1G60160			Potassium transporter family p...		Potri.008G147300 [exp]	12.00	0.7312
AT3G28860		ABCB19, ATMDR11...	P-GLYCOPROTEIN 19, MULTIDRUG R...		Potri.017G081100 [exp]	12.56	0.7432
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Potri.010G191500 [exp]	27.62	0.7096
AT2G19170		SLP3	subtilisin-like serine proteas...		Potri.006G076200 [exp]	28.93	0.7322	SLP3.1
					Potri.001G103200 [exp]	32.86	0.6971
AT4G18260			Cytochrome b561/ferric reducta...		Potri.011G080400 [exp]	38.70	0.6974
AT1G12230			Aldolase superfamily protein (...		Potri.001G120400 [exp]	40.34	0.7013
AT1G79640			Protein kinase superfamily pro...		Potri.003G186700 [exp]	42.34	0.6224
AT1G20670			DNA-binding bromodomain-contai...		Potri.006G112000 [exp]	44.27	0.6935	BRD919
AT2G03200			Eukaryotic aspartyl protease f...		Potri.001G020400 [exp]	51.57	0.5980

Compare expression of checked genes

Potri.014G079300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.