Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46310 163 / 3e-48 AP2_ERF CRF5 cytokinin response factor 5 (.1) AT3G61630 161 / 3e-47 AP2_ERF CRF6 cytokinin response factor 6 (.1) AT4G27950 158 / 5e-46 AP2_ERF CRF4 cytokinin response factor 4 (.1) AT4G23750 135 / 5e-37 AP2_ERF TMO3, CRF2 TARGET OF MONOPTEROS 3, cytokinin response factor 2 (.1.2) AT4G11140 129 / 2e-35 AP2_ERF CRF1 cytokinin response factor 1 (.1) AT5G53290 118 / 1e-30 AP2_ERF CRF3 cytokinin response factor 3 (.1) AT1G71130 98 / 8e-25 AP2_ERF CRF8 cytokinin response factor 8, Integrase-type DNA-binding superfamily protein (.1) AT1G22985 98 / 1e-24 AP2_ERF CRF7 cytokinin response factor 7, Integrase-type DNA-binding superfamily protein (.1) AT5G13330 97 / 1e-23 AP2_ERF RAP2.6L related to AP2 6l (.1) AT2G47520 95 / 2e-23 AP2_ERF AtERF71, ERF71, HRE2 HYPOXIA RESPONSIVE ERF \(ETHYLENE RESPONSE FACTOR\) 2, Arabidopsis thaliana ethylene response factor 71, Integrase-type DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G167400 [exp] 522 / 0 AT4G27950 162 / 3e-47 cytokinin response factor 4 (.1) Potri.012G032900 [exp] 169 / 9e-50 AT4G27950 214 / 6e-67 cytokinin response factor 4 (.1) Potri.015G023200 [exp] 162 / 4e-47 AT4G27950 211 / 9e-66 cytokinin response factor 4 (.1) Potri.001G094800 [exp] 151 / 4e-43 AT4G23750 177 / 2e-52 TARGET OF MONOPTEROS 3, cytokinin response factor 2 (.1.2) Potri.003G136300 [exp] 147 / 2e-41 AT4G11140 160 / 1e-46 cytokinin response factor 1 (.1) Potri.019G131300 [exp] 137 / 6e-38 AT4G27950 139 / 2e-38 cytokinin response factor 4 (.1) Potri.013G158500 [exp] 130 / 3e-35 AT4G27950 124 / 1e-32 cytokinin response factor 4 (.1) Potri.011G056900 [exp] 96 / 6e-24 AT1G28360 149 / 6e-46 ERF domain protein 12 (.1) Potri.001G067600 [exp] 95 / 5e-23 AT5G13330 130 / 1e-37 related to AP2 6l (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027573 [exp] 161 / 2e-46 AT4G27950 209 / 1e-64 cytokinin response factor 4 (.1) Lus10018756 [exp] 161 / 3e-44 AT1G64280 506 / 2e-170 SALICYLIC ACID INSENSITIVE 1, NON-INDUCIBLE IMMUNITY 1, ARABIDOPSIS NONEXPRESSER OF PR GENES 1, regulatory protein (NPR1) (.1) Lus10039324 [exp] 154 / 8e-44 AT4G27950 210 / 8e-65 cytokinin response factor 4 (.1) Lus10017550 [exp] 145 / 3e-41 AT4G23750 172 / 2e-51 TARGET OF MONOPTEROS 3, cytokinin response factor 2 (.1.2) Lus10032353 [exp] 142 / 6e-40 AT4G23750 207 / 2e-64 TARGET OF MONOPTEROS 3, cytokinin response factor 2 (.1.2) Lus10033938 [exp] 142 / 1e-39 AT4G23750 201 / 6e-62 TARGET OF MONOPTEROS 3, cytokinin response factor 2 (.1.2) Lus10003037 [exp] 135 / 3e-38 AT2G46310 122 / 8e-34 cytokinin response factor 5 (.1) Lus10005149 [exp] 125 / 6e-35 AT4G27950 106 / 6e-28 cytokinin response factor 4 (.1) Lus10016827 [exp] 100 / 2e-24 AT3G16770 183 / 4e-57 RELATED TO AP2 3, ETHYLENE RESPONSE FACTOR 72, ethylene-responsive element binding protein (.1) Lus10014054 [exp] 99 / 4e-24 AT4G34410 139 / 4e-40 redox responsive transcription factor 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [poplar] [flax] MBD-like PF00847 [poplar] [flax] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Potri.014G094500.1 pacid=42763858 polypeptide=Potri.014G094500.1.p locus=Potri.014G094500 ID=Potri.014G094500.1.v4.1 annot-version=v4.1 ATGTTTTCACCCAAAAACCAAACCCACAAGAGACTTGATTGCATTAAAAAAATGGATCGCTTTTCTACCAAATACACAGAGCATAAAACCGTGACCAACA AGCTGGTGAGATGGGAGGACTCAAAAGCCACAAGAATTGTAAGGATTTCTGTGACTGACGGGAATGCAACGGACTCCTCTGGAGATGAAAATGAGGAACC CAAGATCCAACATCCAAGAATTAAAAAGCATATCAACGAGATAAGAATGACAAATTGCAGCGACAGGGAAGCAGAGGATGCGAAAAAATCACCAGGACAG CAAGTTGTGAAAAAAAACTCAAGGGATCAGTATTATTATCCAGAAGGGAAAAAGTATCGTGGTGTGAGACAAAGGCCATGGGGGAGATGGGCAGCAGAGA TCAGAGACCCTTATAGGAGAACCCGGGTATGGTTAGGGACTTATGACACAGCAGAGGAGGCAGCCATGGTTTATGATCAGGCTGCTATTCGTATTAAAGG ACCTGATGCACAGACCAATTTCACAAACACTCTGGTGAGCAAACAACATACCCCAGATGTTGATATTAATGTTAACATTTCTGGGTATGATTCTGGTAAA GAGTCTCATAATAGTCTATGCTCTCCAACTTCTGTACTTAGATTTCATTCCACTGGGGAACCGGGTCCAGAGTCACAGGCTGCTGTACAGAGTGACTGTT GCTGGAGACAAAATCAAGAGGTCGTTCAAGAAGAAATATTGAAGGGTGGTGATGATGAGTGTTTGGTGATGGATCCTCTGTGTTTGAAGGAGTTTTGGGA CTTTGAAAGTCCTGCACCGATTTTTTTTGAGGAGTGCAGTGTACCGGGTACTGTTTTGAGAGAAGATTATGCTGATATGCCGGTACATTTAGATTGTGAT TTTGGTTCCTGTTTATGGGATGTTGACAAGTATTTTGAGGCATAA
AA sequence Show only first row Show all	>Potri.014G094500.1 pacid=42763858 polypeptide=Potri.014G094500.1.p locus=Potri.014G094500 ID=Potri.014G094500.1.v4.1 annot-version=v4.1 MFSPKNQTHKRLDCIKKMDRFSTKYTEHKTVTNKLVRWEDSKATRIVRISVTDGNATDSSGDENEEPKIQHPRIKKHINEIRMTNCSDREAEDAKKSPGQ QVVKKNSRDQYYYPEGKKYRGVRQRPWGRWAAEIRDPYRRTRVWLGTYDTAEEAAMVYDQAAIRIKGPDAQTNFTNTLVSKQHTPDVDINVNISGYDSGK ESHNSLCSPTSVLRFHSTGEPGPESQAAVQSDCCWRQNQEVVQEEILKGGDDECLVMDPLCLKEFWDFESPAPIFFEECSVPGTVLREDYADMPVHLDCD FGSCLWDVDKYFEA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G46310	AP2_ERF	CRF5	cytokinin response factor 5 (....		Potri.014G094500 [exp]	0	1
					Potri.014G061700 [exp]	8.18	0.9137
AT2G32235			unknown protein		Potri.018G147100 [exp]	16.73	0.8673
					Potri.009G163001 [exp]	18.76	0.8076
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Potri.006G010800 [exp]	19.89	0.8778
AT1G69680			Mog1/PsbP/DUF1795-like photosy...		Potri.019G023800 [exp]	25.92	0.8393
AT1G22275		ZYP1b	Myosin heavy chain-related pro...		Potri.002G096400 [exp]	32.93	0.7635
					Potri.003G013856 [exp]	35.66	0.8613
AT3G63340			Protein phosphatase 2C family ...		Potri.005G214650 [exp]	37.14	0.7900
AT4G10950			SGNH hydrolase-type esterase s...		Potri.003G141300 [exp]	38.34	0.8587
					Potri.003G151900 [exp]	39.68	0.7968

Compare expression of checked genes

Potri.014G094500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.