Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46570 831 / 0 LAC6 laccase 6 (.1) AT5G05390 570 / 0 LAC12 laccase 12 (.1) AT2G40370 554 / 0 LAC5 laccase 5 (.1) AT2G38080 532 / 0 ATLMCO4, IRX12, LAC4 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) AT2G30210 530 / 0 LAC3 laccase 3 (.1) AT5G03260 527 / 0 LAC11 laccase 11 (.1) AT5G60020 525 / 0 LAC17, ATLAC17 laccase 17 (.1) AT5G01190 525 / 0 LAC10 laccase 10 (.1) AT5G07130 511 / 2e-176 LAC13 laccase 13 (.1) AT5G58910 497 / 8e-172 LAC16 laccase 16 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G183600 [exp] 557 / 0 AT2G40370 937 / 0.0 laccase 5 (.1) Potri.008G073700 [exp] 555 / 0 AT2G40370 946 / 0.0 laccase 5 (.1) Potri.008G073800 [exp] 554 / 0 AT5G05390 893 / 0.0 laccase 12 (.1) Potri.010G183500 [exp] 553 / 0 AT5G05390 915 / 0.0 laccase 12 (.1) Potri.006G097000 [exp] 553 / 0 AT2G38080 914 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Potri.006G097100 [exp] 549 / 0 AT2G38080 896 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Potri.006G096900 [exp] 549 / 0 AT2G38080 899 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Potri.016G112000 [exp] 546 / 0 AT2G38080 911 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Potri.001G248700 [exp] 541 / 0 AT2G38080 874 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030235 [exp] 995 / 0 AT2G46570 802 / 0.0 laccase 6 (.1) Lus10005976 [exp] 946 / 0 AT2G46570 774 / 0.0 laccase 6 (.1) Lus10034614 [exp] 538 / 0 AT5G60020 934 / 0.0 laccase 17 (.1) Lus10035517 [exp] 537 / 0 AT2G38080 907 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Lus10017175 [exp] 536 / 0 AT2G38080 875 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Lus10027782 [exp] 532 / 0 AT2G38080 887 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Lus10034439 [exp] 530 / 0 AT5G60020 943 / 0.0 laccase 17 (.1) Lus10017427 [exp] 530 / 0 AT2G40370 894 / 0.0 laccase 5 (.1) Lus10019122 [exp] 529 / 0 AT5G60020 938 / 0.0 laccase 17 (.1) Lus10018208 [exp] 528 / 0 AT2G38080 837 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [poplar] [flax] CU_oxidase PF00394 [poplar] [flax] Cu-oxidase Multicopper oxidase CL0026 [poplar] [flax] CU_oxidase PF07731 [poplar] [flax] Cu-oxidase_2 Multicopper oxidase CL0026 [poplar] [flax] CU_oxidase PF07732 [poplar] [flax] Cu-oxidase_3 Multicopper oxidase
Representative CDS sequence Show only first row Show all	>Potri.014G100600.1 pacid=42762826 polypeptide=Potri.014G100600.1.p locus=Potri.014G100600 ID=Potri.014G100600.1.v4.1 annot-version=v4.1 ATGGCCAACGTAGTAACTTCATTTATGCTATGGTTATGCTTGATATCCTATGCTTACACTACTATTCATGCTGCTCCAGAGTGGCCTCGAGGGAGATCGA CCAGGTTTTATGATTTCAAGATTCAAACGATGACAGTCAATAAACTGTGCAATTCTAAGCAAATCGTGACAGTCAACAATATGTTTCCCGGACCAGTTGT TTATGCCCAACAAGGCGATAGATTGATCGTAAAAGTTAGTAACGAGTCACCTTACAACGCCACTATCCACTGGCATGGAGTCAGGCAGATACTATCATGC TGGTTCGACGGACCTTCGTATATCACCCAATGTCCGATTCAACCTGGTCAGACTTTCACATATGAGTTCACATTGGTGGGGCAAAAGGGCACCTTCTTCT GGCATGCTCATGTTTCCTGGCTCAGGGCCACAGTTTACGGTGCCCTGGTCGTATATCCAAAGCCTGGGGTCCCATACCCATTCAAGTACCCATACGAAGA GCATATTGTAATTCTAGGGGAATACTGGCTTCAGGATATTGTACATCTTGAGCGCCAAGTCGTAGCAAGCGGGGGAGGTCCTCCACCAGCAAATGCGTAC ACCATTAATGGTCATCCTGGCCCTAACTACAATTGCTCTGCTACTGATGTGTACAAGATCGATGTGCTCCCTGGGAAGACCTACTTGTTAAGGCTGATAA ACGCAGGCTTAAACATGGAGAACTTCTTCGCTATTGCTAATCACAAATTAACAATAGTGGAAGCCGATGCTGAATACACAAAACCTTTCACCACAGACCG TGTGATGCTCGGACCAGGCCAGACCATGATCGTCCTAGTTACCGCTGATCAGACAATTGGAAAATACTCCATGGCCATGGGACCTTATGCGTCAGGTCAA AACGTTGCATTCCAGAATATATCTGCAATTGCGTACTTCCAGTACGTGGGAGCAATGCCTAACAGCTTATCTTTACCAGCTAGATTACCCAGCTTTAACG ACAATTTGGCTGTTAAGACAGTCATGGATGGCCTAAGAGGCCTAAACACTTCCGATGTTCCAAAAGAGATTGATACTAACCTCTTTCTTACCATTGGGAT GAACGTTAACAAGTGTAGGTCCAAGACACCACAGCAGAACTGCCAAGGCCTCAATAATGGGACGATGGCAGCTTCTATGAACAATATCAGTTTCATCAAG CCAACAGTTTCAGTTTTGGAAGCTTATTATAAGGGAATTGACGGGTTTTTCACCGATAACTTTCCCGGGGCACCCTTCAGATTCTATGACTTCGTCAATG GGGCACCGAACAACGCTCCTAACGACACCAGCTCGATGAATGGGACTAGGGTCAAGGTCCTTGAATACGGAACCCGCGTGCAAATGATCTTGCAGGATAC TGGGACGGTAACAACTGAGAATCACCCTATTCATCTTCATGGCTATAGCTTCTACGTTGTGGGTTATGGCGCAGGAAACTATAATCCGCAGACAGCAAAT CTAAATTTAGTTGATCCACCATACATGAACACAATCGGAGTTCCAGTGGGTGGATGGGCCGCCATTCGATTTGTTGCTGACAATCCTGGTGTTTGGTTTA TGCATTGTCACTTGGATATACACCAGTCGTGGGGGTTAGGTACGGTTTTTATAGTGAAGAATGGGAATGGGCACCTCGAGACTCTCCCTCATCCTCCAGC AGATCTGCCCCGCTGCTAG
AA sequence Show only first row Show all	>Potri.014G100600.1 pacid=42762826 polypeptide=Potri.014G100600.1.p locus=Potri.014G100600 ID=Potri.014G100600.1.v4.1 annot-version=v4.1 MANVVTSFMLWLCLISYAYTTIHAAPEWPRGRSTRFYDFKIQTMTVNKLCNSKQIVTVNNMFPGPVVYAQQGDRLIVKVSNESPYNATIHWHGVRQILSC WFDGPSYITQCPIQPGQTFTYEFTLVGQKGTFFWHAHVSWLRATVYGALVVYPKPGVPYPFKYPYEEHIVILGEYWLQDIVHLERQVVASGGGPPPANAY TINGHPGPNYNCSATDVYKIDVLPGKTYLLRLINAGLNMENFFAIANHKLTIVEADAEYTKPFTTDRVMLGPGQTMIVLVTADQTIGKYSMAMGPYASGQ NVAFQNISAIAYFQYVGAMPNSLSLPARLPSFNDNLAVKTVMDGLRGLNTSDVPKEIDTNLFLTIGMNVNKCRSKTPQQNCQGLNNGTMAASMNNISFIK PTVSVLEAYYKGIDGFFTDNFPGAPFRFYDFVNGAPNNAPNDTSSMNGTRVKVLEYGTRVQMILQDTGTVTTENHPIHLHGYSFYVVGYGAGNYNPQTAN LNLVDPPYMNTIGVPVGGWAAIRFVADNPGVWFMHCHLDIHQSWGLGTVFIVKNGNGHLETLPHPPADLPRC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G46570		LAC6	laccase 6 (.1)		Potri.014G100600 [exp]	0	1
AT1G70560		CKRC1, WEI8, TA...	WEAK ETHYLENE INSENSITIVE 8, S...		Potri.010G044500 [exp]	2.44	0.9471
					Potri.012G028432 [exp]	2.82	0.9557
AT1G30950		UFO	UNUSUAL FLORAL ORGANS, F-box f...		Potri.003G074100 [exp]	4.47	0.8416	Pt-UFO.1
AT5G66390			Peroxidase superfamily protein...		Potri.007G019300 [exp]	4.47	0.9420
AT4G18380			F-box family protein (.1.2)		Potri.003G203500 [exp]	4.58	0.9096
AT5G07050			nodulin MtN21 /EamA-like trans...		Potri.012G007700 [exp]	5.00	0.9391
					Potri.014G100650 [exp]	5.00	0.8064
AT5G51100		FSD2	Fe superoxide dismutase 2 (.1)		Potri.015G110400 [exp]	5.74	0.8971
AT4G19980			unknown protein		Potri.001G123300 [exp]	6.32	0.7336
AT5G53550		ATYSL3, YSL3	YELLOW STRIPE like 3 (.1.2)		Potri.012G027800 [exp]	8.00	0.9095

Compare expression of checked genes

Potri.014G100600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.