Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03450 174 / 7e-48 GRAS RGL2 RGA-like 2 (.1) AT5G17490 169 / 3e-46 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1) AT1G66350 164 / 4e-44 GRAS RGL1 RGA-like 1 (.1) AT2G01570 155 / 7e-41 GRAS RGA1 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) AT1G14920 148 / 1e-38 GRAS RGA2, GAI RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) AT1G63100 145 / 6e-37 GRAS GRAS family transcription factor (.1) AT3G46600 132 / 2e-33 GRAS GRAS family transcription factor (.1.2.3) AT5G41920 129 / 1e-32 GRAS GRAS family transcription factor (.1) AT5G59450 129 / 8e-32 GRAS SCL11 GRAS family transcription factor (.1) AT2G29065 129 / 1e-31 GRAS family transcription factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G195600 [exp] 858 / 0 AT3G03450 209 / 2e-60 RGA-like 2 (.1) Potri.010G143700 [exp] 372 / 2e-122 AT1G66350 182 / 2e-50 RGA-like 1 (.1) Potri.010G143600 [exp] 366 / 1e-120 AT3G03450 205 / 7e-59 RGA-like 2 (.1) Potri.010G143500 [exp] 355 / 4e-116 AT3G03450 182 / 8e-51 RGA-like 2 (.1) Potri.010G143400 [exp] 326 / 6e-106 AT1G66350 207 / 1e-60 RGA-like 1 (.1) Potri.010G143200 [exp] 294 / 7e-94 AT1G66350 198 / 8e-58 RGA-like 1 (.1) Potri.008G131700 [exp] 173 / 5e-47 AT2G01570 781 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.001G326000 [exp] 168 / 7e-45 AT1G66350 296 / 2e-92 RGA-like 1 (.1) Potri.010G110700 [exp] 160 / 2e-42 AT2G01570 764 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002424 [exp] 468 / 2e-159 AT5G17490 161 / 8e-43 RGA-like protein 3 (.1) Lus10001451 [exp] 421 / 2e-143 AT5G17490 179 / 7e-51 RGA-like protein 3 (.1) Lus10000140 [exp] 341 / 4e-112 AT5G17490 86 / 8e-18 RGA-like protein 3 (.1) Lus10037758 [exp] 337 / 7e-109 AT3G03450 186 / 6e-52 RGA-like 2 (.1) Lus10016897 [exp] 332 / 3e-107 AT3G03450 189 / 5e-53 RGA-like 2 (.1) Lus10016893 [exp] 311 / 6e-99 AT3G03450 175 / 1e-47 RGA-like 2 (.1) Lus10037753 [exp] 278 / 5e-87 AT1G66350 156 / 8e-42 RGA-like 1 (.1) Lus10036459 [exp] 270 / 2e-83 AT3G03450 171 / 1e-46 RGA-like 2 (.1) Lus10037756 [exp] 254 / 2e-78 AT1G50420 156 / 5e-42 scarecrow-like 3 (.1) Lus10016889 [exp] 255 / 3e-78 AT1G66350 162 / 7e-44 RGA-like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF03514 [poplar] [flax] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Potri.014G120000.3 pacid=42763108 polypeptide=Potri.014G120000.3.p locus=Potri.014G120000 ID=Potri.014G120000.3.v4.1 annot-version=v4.1 ATGGCGAATGCTTCGTTCTCTTTCGATCCATTCGACTTCAATGGAATACAGAGTGGTTATAGTCATAATGAAGATTATGAGAAAGAGGAATTGGTGATCA AAGGAAAGCAAGACCGAATGTTTTCCATGGAAGACTTGGGGCAGGTTTATCCTATATGTTCTGAATATGGTGCTTATCAAGATAACACAGAGAACAAGGA GCTCAATTTCTTTAGAGATCAGCACCAGCAGCAGCCACAACAACAACAATCGCCACCCAATACAAATTATTTGGCATTGGATGACTTACTTGGTTATTGT TTCCCAGCACCAGCGCAACCAACGCAGGAAATCAGAAAGATTGAGAACATTGTCGAACATAGTAAAGAGATGCAATATACACCTGCACTATCATCATCTT TACAACTCCTTCACAATTATGGAAGTGGGATCAAGAAGTTGAATGCGAACCAGCCCGGCAGTGCTAGCAATGAAACTTGCTTCGGGAGTCGAAAGAAACT GTCAACTGAGGAGATCATAAGAGTAGCTGGATCAATGTTCATACAATTCTCTGATCAAAGATATGATGATTTCTCCATGCTCATGCACCCTTTTGGTTAT GCCCTCTCAGGCCTATCCGAGGAAGAAAAAAGGGATGTGGAACTCACTCACCTTCTGCTAGCAGCAGCAGAGAAGGTAGGCTACCGACAATTTGACCGTG CAAGCAGATTGCTGAGCCGTGGTGAACGGGTTGCATCTGAGAGATCCAATCCACTCCAGAGGGTTGTGTACCACTTCGCAGAAGCTCTTCGATGGAGGAT TGATAAGGCAACAGGAAGATTCCCTCCAACAGAAATGAAGGGAAAACCAAAATGTGTAACTCCTCATGGTTTAAGTACACATCTAGTTCACCTTAGCGTC CACCAGAAAGTTCCTATTAATCAGGTAATGCAACTCACAGCGATCCAAGCAATAAATGAAAATGTTGGATCAGCAAGAAAGATCCATTTAATTGACCTGG AAATCAGGAGTGGAGTTCAATGGACGGCCTTGATGCAAGCTCTTGCAGATCGTCAACGCCGGCTTGACCATCTTAAGATAACTGCTGTTGGCTTGAGAGG CATACAAAAGATAGAGGAGACTGGTAAGAGGTTAGAAACCTTTGCTAAGTCCATGAACCTCCCATTCACGTTCAAACCAATTCTGGTATCTAGCATGTCT GAAATCAAGGAGGAACTATTTGAAACAGCAGCTGATGAAACCGTGGTTGTTGTCTCTAACATGATACTCAGGACAATGCTCTCAAGGCCAGCTTGCTTGG AAAATTTGATGGAAGTGATTAAAAATCTTAATCCTTCATTAATGATCGTCGGCGAAGTTGAAGCAAATCACAATTCACCAAAATTTGTGAACCGTTTCAT TGAAGCATTGTTCTTTTATGGTGCATATTTCGATTGTATTGAGACCTGCCTGGAACAGAACACTGAGCACAGAACGATAACTGAAGCAATCTTCTCTAAC GGGATAGAAAATATGGTGGCTATGGAAGGCACCGACAGGATTGCTAGAAACGTGAAAATAGATGTATGGAGGGCATTCTTTTCAAGATTTAGAATGGTGG AAGTAGGATTTAGTGAGTCGTCCCCCTATACCAAGCTAGCTTGA
AA sequence Show only first row Show all	>Potri.014G120000.3 pacid=42763108 polypeptide=Potri.014G120000.3.p locus=Potri.014G120000 ID=Potri.014G120000.3.v4.1 annot-version=v4.1 MANASFSFDPFDFNGIQSGYSHNEDYEKEELVIKGKQDRMFSMEDLGQVYPICSEYGAYQDNTENKELNFFRDQHQQQPQQQQSPPNTNYLALDDLLGYC FPAPAQPTQEIRKIENIVEHSKEMQYTPALSSSLQLLHNYGSGIKKLNANQPGSASNETCFGSRKKLSTEEIIRVAGSMFIQFSDQRYDDFSMLMHPFGY ALSGLSEEEKRDVELTHLLLAAAEKVGYRQFDRASRLLSRGERVASERSNPLQRVVYHFAEALRWRIDKATGRFPPTEMKGKPKCVTPHGLSTHLVHLSV HQKVPINQVMQLTAIQAINENVGSARKIHLIDLEIRSGVQWTALMQALADRQRRLDHLKITAVGLRGIQKIEETGKRLETFAKSMNLPFTFKPILVSSMS EIKEELFETAADETVVVVSNMILRTMLSRPACLENLMEVIKNLNPSLMIVGEVEANHNSPKFVNRFIEALFFYGAYFDCIETCLEQNTEHRTITEAIFSN GIENMVAMEGTDRIARNVKIDVWRAFFSRFRMVEVGFSESSPYTKLA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G03450	GRAS	RGL2	RGA-like 2 (.1)		Potri.014G120000 [exp]	0	1
					Potri.017G110800 [exp]	1.41	0.8759
AT1G65680		ATHEXPBETA1.4, ...	expansin B2 (.1)		Potri.014G066300 [exp]	5.00	0.8312	PtrEXPB1,Pt-EXPB4.1
					Potri.012G102100 [exp]	7.74	0.8035
AT2G18370			Bifunctional inhibitor/lipid-t...		Potri.001G232900 [exp]	12.24	0.8582
AT2G36540			Haloacid dehalogenase-like hyd...		Potri.010G244200 [exp]	14.14	0.8325
AT2G16385			unknown protein		Potri.009G119900 [exp]	19.20	0.8359
AT3G28150		AXY4L, TBL22	ALTERED XYLOGLUCAN 4-LIKE, TRI...		Potri.017G073700 [exp]	22.97	0.8191
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Potri.016G046500 [exp]	25.21	0.7716
AT5G42830			HXXXD-type acyl-transferase fa...		Potri.014G025600 [exp]	26.94	0.8269
AT2G37730			Protein of unknown function (D...		Potri.006G089150 [exp]	28.91	0.8037

Compare expression of checked genes

Potri.014G120000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.