Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49330 213 / 1e-65 MYB PFG3, ATMYB111 PRODUCTION OF FLAVONOL GLYCOSIDES 3, ARABIDOPSIS MYB DOMAIN PROTEIN 111, myb domain protein 111 (.1) AT2G47460 206 / 1e-62 MYB PFG1, ATMYB12 PRODUCTION OF FLAVONOL GLYCOSIDES 1, myb domain protein 12 (.1) AT3G62610 202 / 3e-61 MYB PFG2, ATMYB11 PRODUCTION OF FLAVONOL GLYCOSIDES 2, myb domain protein 11 (.1) AT5G16600 178 / 2e-52 MYB ATMYB43 myb domain protein 43 (.1) AT4G38620 176 / 3e-52 MYB AtMYB4 myb domain protein 4 (.1) AT2G16720 176 / 4e-52 MYB AtY49, AtMYB7 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) AT4G09460 173 / 2e-51 MYB ATMYB6, ATMYB8 myb domain protein 6 (.1) AT5G15310 175 / 4e-51 MYB ATMYB16, ATMIXTA myb domain protein 16 (.1.2) AT3G61250 174 / 4e-51 MYB LMI2, ATMYB17 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) AT3G02940 174 / 5e-51 MYB ATMYB107 myb domain protein 107 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G198100 [exp] 528 / 0 AT5G49330 225 / 2e-70 PRODUCTION OF FLAVONOL GLYCOSIDES 3, ARABIDOPSIS MYB DOMAIN PROTEIN 111, myb domain protein 111 (.1) Potri.010G141000 [exp] 228 / 3e-71 AT5G49330 248 / 7e-80 PRODUCTION OF FLAVONOL GLYCOSIDES 3, ARABIDOPSIS MYB DOMAIN PROTEIN 111, myb domain protein 111 (.1) Potri.014G100800 [exp] 182 / 2e-54 AT2G16720 207 / 3e-66 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) Potri.004G138000 [exp] 182 / 4e-54 AT4G38620 257 / 8e-85 myb domain protein 4 (.1) Potri.003G144200 [exp] 181 / 7e-54 AT5G49330 205 / 2e-64 PRODUCTION OF FLAVONOL GLYCOSIDES 3, ARABIDOPSIS MYB DOMAIN PROTEIN 111, myb domain protein 111 (.1) Potri.T011525 [exp] 181 / 2e-53 AT4G38620 257 / 5e-85 myb domain protein 4 (.1) Potri.T011400 [exp] 181 / 2e-53 AT4G38620 257 / 5e-85 myb domain protein 4 (.1) Potri.001G086700 [exp] 179 / 2e-53 AT5G49330 203 / 6e-64 PRODUCTION OF FLAVONOL GLYCOSIDES 3, ARABIDOPSIS MYB DOMAIN PROTEIN 111, myb domain protein 111 (.1) Potri.002G173900 [exp] 179 / 3e-53 AT3G13540 207 / 4e-66 myb domain protein 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036336 [exp] 216 / 1e-66 AT2G47460 225 / 9e-71 PRODUCTION OF FLAVONOL GLYCOSIDES 1, myb domain protein 12 (.1) Lus10010273 [exp] 207 / 3e-63 AT2G47460 221 / 3e-69 PRODUCTION OF FLAVONOL GLYCOSIDES 1, myb domain protein 12 (.1) Lus10016855 [exp] 205 / 5e-63 AT5G49330 242 / 3e-78 PRODUCTION OF FLAVONOL GLYCOSIDES 3, ARABIDOPSIS MYB DOMAIN PROTEIN 111, myb domain protein 111 (.1) Lus10001458 [exp] 201 / 4e-61 AT2G47460 212 / 5e-66 PRODUCTION OF FLAVONOL GLYCOSIDES 1, myb domain protein 12 (.1) Lus10002435 [exp] 201 / 5e-61 AT2G47460 206 / 9e-64 PRODUCTION OF FLAVONOL GLYCOSIDES 1, myb domain protein 12 (.1) Lus10036453 [exp] 194 / 6e-59 AT5G49330 237 / 1e-76 PRODUCTION OF FLAVONOL GLYCOSIDES 3, ARABIDOPSIS MYB DOMAIN PROTEIN 111, myb domain protein 111 (.1) Lus10001548 [exp] 180 / 1e-53 AT4G09460 291 / 2e-99 myb domain protein 6 (.1) Lus10009448 [exp] 180 / 1e-53 AT4G09460 290 / 2e-99 myb domain protein 6 (.1) Lus10000411 [exp] 178 / 7e-53 AT4G09460 300 / 5e-103 myb domain protein 6 (.1) Lus10016948 [exp] 177 / 2e-52 AT4G09460 301 / 1e-103 myb domain protein 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.014G122700.2 pacid=42763928 polypeptide=Potri.014G122700.2.p locus=Potri.014G122700 ID=Potri.014G122700.2.v4.1 annot-version=v4.1 ATGGGAAGGGCACCTTGTTGTGAAAAGGTGGGCTTGAAGAAAGGGAGATGGACTGCAGAAGAGGATGAGAAATTGACAAAGTATATTCAAGCTAACGGAG AAGGTTCTTGGCGGTCATTGCCCAAGAATGCAGGGTTGCTTAGGTGTGGAAAGAGTTGCAGATTGAGATGGATTAACTACTTGGCAGCTGACTTGAAGAG GGGAAACATATCTGCTGAGGAGGAAGAGATCATCATAAATTTACATGCTTCTTTGGGCAATAGGTGGTCTTTGATAGCCAGTCACTTACCAGGAAGAACA GACAATGAGATAAAGAACTACTGGAACTCTCATTTGAGCAGAAGAATTTACAGCTTTAGAAGACCTGTAAATGAAAGACTACCATTGATCATCGAAACAG CCAAGCAGGGCATGTTAGCCAAAAGTGGAGCAGGTAGATTTGCAATAAAGAAAAAAAAAATTAGCCACCCTCAAAAGGATGCCATCAGGGTGCCAACAAA GAGACCACGAAAAGAAAATAATACTGGTGATTTCTCTAATTCAAATATTGAAGGCATCCAATTGCCACAGACACCAGCAGCAGAGAAAAATACCCTGTCA AGTACAATCAATGATACGGTGATTTGGGATCCATGTGCAGAGGACAAGGAGCTAATGGACCTTGTCGTGACAACTCCCTGTCCAGAAACTGGAAGAGTAA TGTTGGGTTCAAGTGGGGAGAAAGCAAACCTGGTCATATGCCCTGGTGAAGAGAGAAGAAGACCGAATTCAATTTTTCACCCTAGTGGAGGTGAGAAAGA AAATGATAGCTTCGGACAATTCTGTGAAGGCATCGAAAATGAGATGCTGAGTTTTAATGAGGTGATGGGCAAGGAGTTGCTGGATCCAGATGGCGATTCG AGTTTAAATGATGAGGGACAAAATGGTCTCTTGGTGCACAGTGGGGAGAGGCAGAGTGGGGTTTCGAGTCCTGACAAAACAGTAGACGTTTTTGAGTCCA TTGGTGATTTGAGCTCGAATGGAGAGAGTTGTGACTGGCACTCGTTTTCTTCAATAAGCACGTCAGGTTTTGACGATTGTGGCGTTGATTGGAGCTGGGA TGATGTGATGGGAGGACACCTTGAGATAGGAGATGAGACCAAAGAAGAGAATATGCTATCTTGGTTGTGGGAGAACGAGAAGGGGGAAGAGGTAGTGAAC TATGAGAAGCAAAATGCCATGCTGCTTGGCTTCTTTCTTGATTTGCCTCAATAA
AA sequence Show only first row Show all	>Potri.014G122700.2 pacid=42763928 polypeptide=Potri.014G122700.2.p locus=Potri.014G122700 ID=Potri.014G122700.2.v4.1 annot-version=v4.1 MGRAPCCEKVGLKKGRWTAEEDEKLTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLAADLKRGNISAEEEEIIINLHASLGNRWSLIASHLPGRT DNEIKNYWNSHLSRRIYSFRRPVNERLPLIIETAKQGMLAKSGAGRFAIKKKKISHPQKDAIRVPTKRPRKENNTGDFSNSNIEGIQLPQTPAAEKNTLS STINDTVIWDPCAEDKELMDLVVTTPCPETGRVMLGSSGEKANLVICPGEERRRPNSIFHPSGGEKENDSFGQFCEGIENEMLSFNEVMGKELLDPDGDS SLNDEGQNGLLVHSGERQSGVSSPDKTVDVFESIGDLSSNGESCDWHSFSSISTSGFDDCGVDWSWDDVMGGHLEIGDETKEENMLSWLWENEKGEEVVN YEKQNAMLLGFFLDLPQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G49330	MYB	PFG3, ATMYB111	PRODUCTION OF FLAVONOL GLYCOSI...		Potri.014G122700 [exp]	0	1
AT5G64620		ATC/VIF2, C/VIF...	cell wall / vacuolar inhibitor...		Potri.003G122000 [exp]	1.41	0.9557
AT3G51860		CAX1-LIKE, ATHC...	cation exchanger 3 (.1)		Potri.016G115500 [exp]	2.82	0.9487	CAX3.2
AT4G18960	MADS	AG	AGAMOUS, K-box region and MADS...		Potri.004G064300 [exp]	4.00	0.9093
ATCG00220		ATCG00220.1, PS...	photosystem II reaction center...		Potri.013G142100 [exp]	7.07	0.8973
					Potri.016G004851 [exp]	7.74	0.8681
AT5G19040		ATIPT5	Arabidopsis thaliana ISOPENTEN...		Potri.008G202200 [exp]	12.00	0.8366
AT4G24700			unknown protein		Potri.012G086300 [exp]	15.49	0.8932
AT1G66670		NCLPP3, NCLPP4,...	CLP protease proteolytic subun...		Potri.004G092100 [exp]	16.88	0.9128
AT5G40420		OLE2, PA23, OLE...	oleosin 2 (.1)		Potri.012G083400 [exp]	29.39	0.8521
					Potri.002G109400 [exp]	36.75	0.8851

Compare expression of checked genes

Potri.014G122700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.