Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16770 121 / 1e-32 AP2_ERF RAP2.03, ATEBP, RAP2.3 ,ERF72 RELATED TO AP2 3, ETHYLENE RESPONSE FACTOR 72, ethylene-responsive element binding protein (.1) AT2G47520 112 / 3e-30 AP2_ERF AtERF71, ERF71, HRE2 HYPOXIA RESPONSIVE ERF \(ETHYLENE RESPONSE FACTOR\) 2, Arabidopsis thaliana ethylene response factor 71, Integrase-type DNA-binding superfamily protein (.1) AT1G72360 109 / 4e-28 AP2_ERF AtERF73, HRE1 HYPOXIA RESPONSIVE ERF \(ETHYLENE RESPONSE FACTOR\) 1, ethylene response factor 73, Integrase-type DNA-binding superfamily protein (.1.2.3) AT3G14230 103 / 5e-25 AP2_ERF RAP2.2 related to AP2 2 (.1.2.3) AT1G53910 100 / 4e-24 AP2_ERF RAP2.12 related to AP2 12 (.1.2.3) AT5G13330 86 / 6e-20 AP2_ERF RAP2.6L related to AP2 6l (.1) AT5G61890 87 / 1e-19 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G50080 86 / 1e-19 AP2_ERF ERF110 ethylene response factor 110 (.1) AT1G43160 84 / 2e-19 AP2_ERF RAP2.6, RAP2.06 related to AP2 6 (.1) AT2G33710 85 / 3e-19 AP2_ERF Integrase-type DNA-binding superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G201600 [exp] 395 / 6e-139 AT3G16770 123 / 2e-33 RELATED TO AP2 3, ETHYLENE RESPONSE FACTOR 72, ethylene-responsive element binding protein (.1) Potri.001G163700 [exp] 114 / 4e-29 AT1G53910 223 / 9e-70 related to AP2 12 (.1.2.3) Potri.008G210900 [exp] 112 / 4e-29 AT3G16770 146 / 5e-43 RELATED TO AP2 3, ETHYLENE RESPONSE FACTOR 72, ethylene-responsive element binding protein (.1) Potri.010G006800 [exp] 108 / 5e-28 AT3G16770 130 / 5e-37 RELATED TO AP2 3, ETHYLENE RESPONSE FACTOR 72, ethylene-responsive element binding protein (.1) Potri.003G071700 [exp] 108 / 6e-27 AT1G53910 223 / 7e-70 related to AP2 12 (.1.2.3) Potri.001G067600 [exp] 87 / 8e-20 AT5G13330 130 / 1e-37 related to AP2 6l (.1) Potri.003G162500 [exp] 86 / 1e-19 AT5G13330 142 / 5e-42 related to AP2 6l (.1) Potri.009G101900 [exp] 86 / 2e-19 AT4G34410 119 / 2e-32 redox responsive transcription factor 1 (.1) Potri.012G108500 [exp] 82 / 3e-18 AT5G61890 144 / 3e-42 Integrase-type DNA-binding superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008214 [exp] 206 / 7e-65 AT1G72360 154 / 2e-45 HYPOXIA RESPONSIVE ERF \(ETHYLENE RESPONSE FACTOR\) 1, ethylene response factor 73, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10003601 [exp] 157 / 7e-46 AT1G72360 144 / 2e-41 HYPOXIA RESPONSIVE ERF \(ETHYLENE RESPONSE FACTOR\) 1, ethylene response factor 73, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10016827 [exp] 112 / 7e-29 AT3G16770 183 / 4e-57 RELATED TO AP2 3, ETHYLENE RESPONSE FACTOR 72, ethylene-responsive element binding protein (.1) Lus10037448 [exp] 110 / 2e-27 AT1G53910 244 / 4e-78 related to AP2 12 (.1.2.3) Lus10037487 [exp] 107 / 2e-27 AT3G16770 156 / 2e-47 RELATED TO AP2 3, ETHYLENE RESPONSE FACTOR 72, ethylene-responsive element binding protein (.1) Lus10013186 [exp] 106 / 5e-26 AT1G53910 254 / 7e-82 related to AP2 12 (.1.2.3) Lus10014054 [exp] 83 / 3e-18 AT4G34410 139 / 4e-40 redox responsive transcription factor 1 (.1) Lus10033664 [exp] 81 / 4e-18 AT3G15210 119 / 2e-33 RELATED TO AP2 5, ethylene responsive element binding factor 4 (.1) Lus10006796 [exp] 83 / 8e-18 AT5G61890 122 / 8e-33 Integrase-type DNA-binding superfamily protein (.1) Lus10022426 [exp] 81 / 3e-17 AT5G61890 170 / 1e-51 Integrase-type DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [poplar] [flax] MBD-like PF00847 [poplar] [flax] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Potri.014G126100.1 pacid=42764415 polypeptide=Potri.014G126100.1.p locus=Potri.014G126100 ID=Potri.014G126100.1.v4.1 annot-version=v4.1 ATGTGTGGCGGTGCTATTTTGGCTGGCCTCATCCCTCGTAACCGTGGCCACCGCGTCGCGGCTTCTGAGTTCTGGCCCAACTCATCCTTCAATAAACCCA GTCCCTTCGACACGTATCCGAGTCCTCTCCGCAATCAGGAGCCATTCACTCTCAAACGACCCCAGCCCACTTCAGGGGATCATGAACAAGTGGAGAAGCC GAATGCCAAGAGGCAGAGGAAGAATCTATACAGAGGTATAAGGCAACGACCTTGGGGTAAATGGGCAGCTGAGATTCGTGACCCAAGAAAAGGAGTCCGC GTTTGGCTCGGTACATTTAACACGGCTGAGGAAGCAGCTCGAGCCTACGACAGAGAGGCTCGCAAGATTCGCGGCAAGAAAGCCAAAGTCAATTTTCCTA ACGAAGATGACCATTACTACACGTCCCAAAACTCGAACACCAAGCCTTTCCTGTACCAAGCCCCCACTTGTCATTTCTCAAAAGGTTATGATTCTGGGAA CGTTTATGATGCATATCAGATCGAAACCTTCCATTCAAATGGTTTAATTAACGAACCAATTGTTAGTTCTGGGGAGGATGATTCTAGGTCAGGTTCAGAG GAGGTGACAGGACTGCTGGGCTGTAATCAGAATGTGGAGAGCAATAATTATATGGGTCAAGTAAAGGTGGAAGAGGAGAAACTGGAGGAGAAGAAAGTGA TGAACAAGGAGGTGATGGTGGTGGATTTGGAAACTGGGGAGGAAGAAAGCGAGGTGCAGAAGCTGACTGAGGAGTTAATGGCGTATGAAAATTTCATGAA GTTTTATCAGATTCCGTATCTGGATGGGCAATCAACGGCACCAAATGGGACAACCCAGGAAAGCCTTGTGGGTAATCTTTGGAGCTTTTTTGATGATGGT GTTGATGCTCCTGTCACTTCTGCACCTCTGTAA
AA sequence Show only first row Show all	>Potri.014G126100.1 pacid=42764415 polypeptide=Potri.014G126100.1.p locus=Potri.014G126100 ID=Potri.014G126100.1.v4.1 annot-version=v4.1 MCGGAILAGLIPRNRGHRVAASEFWPNSSFNKPSPFDTYPSPLRNQEPFTLKRPQPTSGDHEQVEKPNAKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVR VWLGTFNTAEEAARAYDREARKIRGKKAKVNFPNEDDHYYTSQNSNTKPFLYQAPTCHFSKGYDSGNVYDAYQIETFHSNGLINEPIVSSGEDDSRSGSE EVTGLLGCNQNVESNNYMGQVKVEEEKLEEKKVMNKEVMVVDLETGEEESEVQKLTEELMAYENFMKFYQIPYLDGQSTAPNGTTQESLVGNLWSFFDDG VDAPVTSAPL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G16770	AP2_ERF	RAP2.03, ATEBP,...	RELATED TO AP2 3, ETHYLENE RES...		Potri.014G126100 [exp]	0	1
AT4G20780		CML42	calmodulin like 42 (.1)		Potri.016G142000 [exp]	10.34	0.8661
AT2G30020			Protein phosphatase 2C family ...		Potri.009G073000 [exp]	15.42	0.8242	Pt-MP2.9
AT4G39830			Cupredoxin superfamily protein...		Potri.007G088358 [exp]	15.42	0.8540
AT1G58290		AtHEMA1, HEMA1	Arabidopsis thaliana hemA 1, G...		Potri.009G080600 [exp]	27.98	0.8442
					Potri.016G134100 [exp]	33.64	0.8410
AT1G80840	WRKY	ATWRKY40, WRKY4...	WRKY DNA-binding protein 40 (....		Potri.003G182200 [exp]	34.19	0.8295	WRKY40.2
AT5G67080		MAPKKK19	mitogen-activated protein kina...		Potri.007G044800 [exp]	36.74	0.8280
AT5G41330			BTB/POZ domain with WD40/YVTN ...		Potri.001G102300 [exp]	38.78	0.8288
AT2G22500		UCP5, ATPUMP5, ...	DICARBOXYLATE CARRIER 1, PLANT...		Potri.017G045150 [exp]	48.68	0.8240
AT4G23810	WRKY	ATWRKY53, WRKY5...	WRKY family transcription fact...		Potri.014G096200 [exp]	50.74	0.8128

Compare expression of checked genes

Potri.014G126100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.