Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13420 852 / 0 HAK5, ATHAK5 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) AT1G60160 682 / 0 Potassium transporter family protein (.1) AT2G30070 610 / 0 ATKUP1, ATKT1P, ATKT1 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1) AT2G35060 607 / 0 KUP11 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) AT1G31120 605 / 0 KUP10 K+ uptake permease 10, K+ uptake permease 10 (.1) AT5G14880 603 / 0 Potassium transporter family protein (.1) AT4G33530 600 / 0 KUP5 K+ uptake permease 5, K+ uptake permease 5 (.1) AT1G70300 594 / 0 KUP6 K+ uptake permease 6, K+ uptake permease 6 (.1) AT2G40540 589 / 0 ATKUP2, ATKT2, TRK2, SHY3, KT2 potassium transporter 2 (.1.2) AT4G19960 578 / 0 KT9, HAK9, ATKUP9 K+ uptake permease 9, K+ uptake permease 9 (.1), K+ uptake permease 9 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G045200 [exp] 856 / 0 AT4G13420 978 / 0.0 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) Potri.001G069799 [exp] 819 / 0 AT4G13420 845 / 0.0 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) Potri.001G069650 [exp] 819 / 0 AT4G13420 951 / 0.0 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) Potri.010G094400 [exp] 686 / 0 AT1G60160 1209 / 0.0 Potassium transporter family protein (.1) Potri.003G109700 [exp] 633 / 0 AT2G35060 1155 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) Potri.001G123800 [exp] 632 / 0 AT2G35060 1149 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) Potri.003G148200 [exp] 608 / 0 AT2G30070 831 / 0.0 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1) Potri.014G144900 [exp] 608 / 0 AT3G02050 1175 / 0.0 K+ uptake transporter 3, ARABIDOPSIS THALIANA POTASSIUM TRANSPORTER 4, K+ uptake transporter 3 (.1) Potri.003G109800 [exp] 606 / 0 AT2G35060 985 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027004 [exp] 1113 / 0 AT4G13420 828 / 0.0 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) Lus10025493 [exp] 1104 / 0 AT4G13420 826 / 0.0 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) Lus10013304 [exp] 768 / 0 AT4G13420 950 / 0.0 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) Lus10012993 [exp] 646 / 0 AT1G60160 1237 / 0.0 Potassium transporter family protein (.1) Lus10018324 [exp] 646 / 0 AT2G35060 1212 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) Lus10003402 [exp] 622 / 0 AT5G09400 1296 / 0.0 K+ uptake permease 7, K+ uptake permease 7 (.1) Lus10030857 [exp] 620 / 0 AT1G70300 1249 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Lus10038361 [exp] 618 / 0 AT2G35060 1164 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) Lus10036160 [exp] 616 / 0 AT5G09400 1204 / 0.0 K+ uptake permease 7, K+ uptake permease 7 (.1) Lus10036221 [exp] 612 / 0 AT2G35060 1173 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [poplar] [flax] APC PF02705 [poplar] [flax] K_trans K+ potassium transporter
Representative CDS sequence Show only first row Show all	>Potri.014G132500.1 pacid=42762596 polypeptide=Potri.014G132500.1.p locus=Potri.014G132500 ID=Potri.014G132500.1.v4.1 annot-version=v4.1 ATGTCTGATGAAGCAATAAAAGCTACCAATGAAGAAAGCCGAGAAGAAGAGTTTTCCCCACAACTCAACGGGAAGAAACTTTCTTGGCAAAAGTTGCGCC GGAATGACTCCTTGGAAATGGAATCCGGCAAGTTTTCTGGTCGTCAAGTCCACGGCTCCAAGGGTGCAAGTTGGTCTGTGATCTTGCAACTAGCATTCCA AAGTATAGGAATAGTGTATGGAGATATTGGTACATCACCTCTGTACGTATACGCCAGCACCTTCACCAAGGGGATCAACCACAACGATGACATCCTGGGT GTACTTTCTTTGATTTTCTATACTCTCACCTTGATCCCTCTTATCAAGTACGTCTTAATCGTCTTACAGGCCAATGATAACGGCGACGGAGGGACTTTCG CCTTGTACTCGCTTATATGCCGATATGCCAAAGTGGGTCTGCTCCCTAGTCAACAAGTTGAAGACCGCGATGTTTCCAATTTCCAGCTGGAGTTGCCAAG CAAGCGTTTACGTAGGGCATCAAAGCTCAAATCTAAGCTAGAAAAAAGCAAATTTGCTAAGCTCTTCCTCCTGTTTGCAACAATGCTCGGTACTTCCATG GTTATTGGGGATGGTGTCCTCACTCCTTGCATCTCAGTTTTATCTGCTGTGGGTGGAATCAAGGAAGCTGCATCATCAATGACCCAAGATAGCATCGTTT GGATATCGGTAGCGATCTTGATCTGCCTATTCATGGTTCAGAGATTTGGAACAGATAAAGTGGGCTACAGTTTTGCACCTGTGATTTGTGTCTGGTTCTC ATTGATTGGCGGTATTGGCATCTACAATCTCTTCAAGTATGATCCAGCAGTGGTCAAAGCTTTGAATCCAATGTACATAGTTGATTATTTCAGGAGGAAC AAAAAAGATGCATGGATTTCCCTTGGTGGCGTTGTCCTTGCCATAACAGGAACTGAAGCACTATTTGCTGATGTTGGTCATTTCACAGTTCGGTCCATTC AAATAAGCATGTGCGTTGTGACATACCCTGCTCTCATATCGGCATACGCTGGACAAGCCGCCTTTCTTAGAAAGCACAACGATCTTGTCTCAGCGACCTT CTTCAAGTCTATTCCAGACCCACTGTACTGGCCAATGTTTGTGGTGGCCGTAATGGCATCAATCATTGCAAGTCAAGCCATGATTTCGGGGACATTCTCC ATAATTCAACAATCACTAGCACTTGGATGTTTCCCTCGGGTGAAAATCGTGCACACATCGGCTAAGTATGAAGGGCAAGTCTACATCCCTGAAGTCAATT ACCTTCTTATGGTGGCATGTGTCTGTGTCACGCTTGGCTTTAAGACTACTACAAAGATTGGCAATGCATATGGAATTGCCGTGGTGTTTGTAATGACTCT CACATCATCCTTCCTGGTACTCATCATGCTAATGATATGGAAAACCAACATATTTCATGTAATTGTCTTTGTGCTTACAATTGGAACTGTGGAGCTTCTG TATTTAAGCTCTGTCCTCTACAAATTTGACCAAGGAGGATATCTACCATTAGCATTTGCTGGGGTTCTAATGGCTATAATGTATAGCTGGAACAATGTGT ATCGAAGAAAGTACTATTACGAGCTTGATCACAAGATTTCTCCAGACAAGCTGATGGAGGTTTCTGCAGGGAACTTTAGCAGGCTTCCTGGACTTGCCAT GTTCTACTCCGAACTTGTTCACGGCATCCCACCCATCTTCAAGCACTATGTGGAAAATGTGCCTGCACTACACTCAGTCCTTGTTTTCGTATCCATCAAG ACTCTGCCAATTGGCAAGGTTCCAGCTGAAGAACGTTTCCTTTTTCGTAGAGTGGAACCAAAGGAGCTCAATGTGTTTCGTTGTGTGGCCAGATATGGAT ACACGGACGTGCGCAATGAACAAGAGCCTTTCGAGGGAATGTTAGTTGAAAAATTGAAGGAGTTCATCAGAAACGAGCACTGGTTCTCCCAAGCATTTCT CACTAATGGGGAGGTGACCGAGAAAGAAGGAGAACCAGATGATGGACAAGTTGAAGATATGAGGATGGAGCAAGCTGCTGAAAAAGAGAAGCAACAAGAG GATGCAGAGAGAGAGATCGAGATCATCGACAAAGCATGCCGTGCTGGTGTTGTTCACTTGATTGGTGAGAATGAAGTGATTGCAAGCAAAGGAGCGAGTT TGGGGGATAGGATTTTAATCAATTACGCTTACAATTTCTTGAAGAAAAACTTGAGACAAAGTGAGAAGGTGTTTGACATTCCTCACAAGCGCATGCTTAA GGTTGGTATGACTTACGAGCTGTAA
AA sequence Show only first row Show all	>Potri.014G132500.1 pacid=42762596 polypeptide=Potri.014G132500.1.p locus=Potri.014G132500 ID=Potri.014G132500.1.v4.1 annot-version=v4.1 MSDEAIKATNEESREEEFSPQLNGKKLSWQKLRRNDSLEMESGKFSGRQVHGSKGASWSVILQLAFQSIGIVYGDIGTSPLYVYASTFTKGINHNDDILG VLSLIFYTLTLIPLIKYVLIVLQANDNGDGGTFALYSLICRYAKVGLLPSQQVEDRDVSNFQLELPSKRLRRASKLKSKLEKSKFAKLFLLFATMLGTSM VIGDGVLTPCISVLSAVGGIKEAASSMTQDSIVWISVAILICLFMVQRFGTDKVGYSFAPVICVWFSLIGGIGIYNLFKYDPAVVKALNPMYIVDYFRRN KKDAWISLGGVVLAITGTEALFADVGHFTVRSIQISMCVVTYPALISAYAGQAAFLRKHNDLVSATFFKSIPDPLYWPMFVVAVMASIIASQAMISGTFS IIQQSLALGCFPRVKIVHTSAKYEGQVYIPEVNYLLMVACVCVTLGFKTTTKIGNAYGIAVVFVMTLTSSFLVLIMLMIWKTNIFHVIVFVLTIGTVELL YLSSVLYKFDQGGYLPLAFAGVLMAIMYSWNNVYRRKYYYELDHKISPDKLMEVSAGNFSRLPGLAMFYSELVHGIPPIFKHYVENVPALHSVLVFVSIK TLPIGKVPAEERFLFRRVEPKELNVFRCVARYGYTDVRNEQEPFEGMLVEKLKEFIRNEHWFSQAFLTNGEVTEKEGEPDDGQVEDMRMEQAAEKEKQQE DAEREIEIIDKACRAGVVHLIGENEVIASKGASLGDRILINYAYNFLKKNLRQSEKVFDIPHKRMLKVGMTYEL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G13420		HAK5, ATHAK5	high affinity K+ transporter 5...		Potri.014G132500 [exp]	0	1
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Potri.008G212100 [exp]	2.00	0.9784
AT5G44440			FAD-binding Berberine family p...		Potri.011G158100 [exp]	2.64	0.9852
AT4G37290			unknown protein		Potri.016G015600 [exp]	3.87	0.9783
AT4G28940			Phosphorylase superfamily prot...		Potri.006G161538 [exp]	6.32	0.9749
AT1G55230			Family of unknown function (DU...		Potri.001G008900 [exp]	6.32	0.9727
AT4G36670		AtPMT6, AtPLT6	polyol/monosaccharide transpor...		Potri.007G027900 [exp]	10.67	0.9627
AT2G41380			S-adenosyl-L-methionine-depend...		Potri.006G042200 [exp]	12.84	0.9768
					Potri.006G008132 [exp]	15.90	0.9724
AT3G49780		ATPSK3(FORMERSY...	phytosulfokine 4 precursor (.1...		Potri.014G014000 [exp]	18.16	0.9671
AT5G63380			AMP-dependent synthetase and l...		Potri.010G057000 [exp]	19.74	0.9596	Ptr4CL12

Compare expression of checked genes

Potri.014G132500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.