Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03000 1165 / 0 PEX6 peroxin 6 (.1) AT5G03340 283 / 3e-82 ATPase, AAA-type, CDC48 protein (.1) AT3G53230 282 / 9e-82 ATPase, AAA-type, CDC48 protein (.1) AT3G09840 262 / 1e-74 ATCDC48, CDC48A, CDC48 cell division cycle 48 (.1) AT3G01610 231 / 1e-63 CDC48C, EMB1354 embryo defective 1354, cell division cycle 48C (.1) AT5G08470 232 / 6e-63 EMB2817, PEX1 EMBRYO DEFECTIVE 2817, peroxisome 1 (.1) AT3G56690 223 / 2e-60 CIP111 Cam interacting protein 111 (.1) AT1G53750 188 / 5e-52 RPT1A regulatory particle triple-A 1A (.1) AT3G05530 180 / 5e-49 ATS6A.2, RPT5A regulatory particle triple-A ATPase 5A (.1) AT1G53780 180 / 1e-47 peptidyl-prolyl cis-trans isomerases;hydrolases;nucleoside-triphosphatases;ATP binding;nucleotide binding;ATPases (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G080600 [exp] 287 / 1e-83 AT5G03340 1455 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.012G088200 [exp] 287 / 1e-83 AT5G03340 1459 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.016G091600 [exp] 284 / 8e-83 AT3G53230 1484 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.006G125500 [exp] 284 / 9e-83 AT5G03340 1496 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.017G108200 [exp] 279 / 6e-81 AT5G03340 1311 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.013G151600 [exp] 247 / 3e-69 AT3G01610 747 / 0.0 embryo defective 1354, cell division cycle 48C (.1) Potri.001G174100 [exp] 235 / 5e-64 AT5G08470 1259 / 0.0 EMBRYO DEFECTIVE 2817, peroxisome 1 (.1) Potri.001G128700 [exp] 210 / 7e-58 AT2G03670 766 / 0.0 cell division cycle 48B (.1) Potri.006G035000 [exp] 213 / 8e-57 AT3G56690 1080 / 0.0 Cam interacting protein 111 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009814 [exp] 1300 / 0 AT1G03000 1168 / 0.0 peroxin 6 (.1) Lus10040918 [exp] 1157 / 0 AT1G03000 1041 / 0.0 peroxin 6 (.1) Lus10037385 [exp] 280 / 4e-81 AT5G03340 1501 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10021441 [exp] 280 / 5e-81 AT5G03340 1529 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10023018 [exp] 270 / 5e-78 AT5G03340 1419 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10021442 [exp] 260 / 5e-74 AT5G03340 1520 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10016123 [exp] 259 / 1e-73 AT5G03340 1526 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10016124 [exp] 255 / 3e-72 AT5G03340 1511 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10001402 [exp] 240 / 4e-69 AT3G53230 803 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10023123 [exp] 241 / 6e-66 AT5G08470 1163 / 0.0 EMBRYO DEFECTIVE 2817, peroxisome 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00004 [poplar] [flax] AAA ATPase family associated with various cellular activities (AAA) CL0023 [poplar] [flax] P-loop_NTPase PF05496 [poplar] [flax] RuvB_N Holliday junction DNA helicase RuvB P-loop domain
Representative CDS sequence Show only first row Show all	>Potri.014G133000.1 pacid=42762428 polypeptide=Potri.014G133000.1.p locus=Potri.014G133000 ID=Potri.014G133000.1.v4.1 annot-version=v4.1 ATGGTGGAGAGGAGGAGGAAGCCTCTGATCCTCTCCTCCACAAAAATCCTCATCGGTTCCGTCCTGCGTTCCTCTCCACTCAGTAGCACTAGCAGTGAAC AAAACCAACTCCCACTCGCAACAGACAACATTTCCCCGTCTCCCAGCTTACAGCTATTGGCAGGAATTCTCCGATTATCCGAGGACAAACTAGCTTCTTC TTTCGATGATTCTGCTCTCCTCGCCATTTCCACTTCCATTCTCAAGAGACTCTCAGTTACTTCTTCTTCACTGGTGCTTATCAAGAATGTTGAGGCAAAC ATAGAGAGAATTGCTCAGGTTGTTGCTCTAGATCCTCCCAGAAATAATGAGAATGAGCTGAAATCCAATGCCAATTTACGAATTTCTTGTACCACAATGC GTTTATTTCCTACTTGTATTTTTCCTCCCGATGACCCCTCTTTACTATTAGACCGCGAAATTGCCTACCTTTCTCCTCTCTTGGCTTTTAATCTTGGGTT GCATGTATCGTGTCTTAAATCACTTGTACGCCGAGGAGATGAGAGTTTGGCTTCGCTTTTTGAAGTGGATGGTGAAACATGTTGTGATGAGGATGTTAGT GCTAATTGTGAGGATTCTGCTATCAGTGTGGGATTGGAACCGTTGGCTCGATTACCGAGATATGCATCACACTTGAGGGTTTCTTTTGTTAAGATACCAG AATGTGGTACTCTTGAATCTCTGAAGGGATTTTCATCGATTGAAGCTGAAGAACGTCAGGAGATGATTGATTTGGCATTGCAGAAATACTTTGAAGTTGA CAGATGTCTTGCCAGAGGTGATATATTTAGTGTTCGTATAGATTGGAATTGCAATTCTACTGTTTGTATTCCTTGTGGCCAGAGGTCACAAGATAGAAGC GATAACATCATCTACTTCAAGGTTGTGGCCATGGAGCCATCAGATGAAGCTGTTCTTAGAGTCAACCATACTCAAACAGCCCTTGTGCTTGGAGGGACTG TTCCTTCTTCTGTTCCTCCGGATCTTCTGATTGATGGACCTAAAGGTTTTGCACCTCTGCAAGGGGACACAGTGAAGACTTTGGCCTCCATACTCACACC ACCATTGTGTCCTTCGGCACTTTCTTCCAAATTCAGAGTTGCTGTCCTATTATATGGCCTGGCAGGGTGTGGGAAGAGGACTGTTGTTAGACATGTTGCT CGTCGCTTGGGCATCCATGTTGTGGAATTCAGCTGTCATAATCTTACAGCATCTTCTGATAGAAAGACATCAGTTGCACTAGCTCAAGCTTTCCGCACAG CTCAAAGATACTCACCTACAATTCTTCTTCTCCGCCATTTTGATTTCTTTCGAAATTTGATGTCACATGAGGGTTCACCAAATGATCAAGTTGGCCTCTC TTCTGAAGTTGCATCAGTTATTAGGGAGTTTACTGAACCAGTCTCTGAAGATGAAGACAATTACTCTGGAGAAAAATCAAATGATTATTTTCTTGTCAAG GATACTGGAAAAATTAGGCATCAGGTTCTGTTAGTTGCCGCTGCTGAAAGTTCTGAGGGTCTGCCACCAACTGTTAGGCGTTGCTTCAGCCATGAGATAA GTATGGGCCCCTTGACAGAAGAACATAGGGCTGAAATGTTGTCCCAGTCACTGCAAAGTGGTTCTAATCTCCTCTCTAATACTGGGATAGAAGATGCAAT AAAGGACATGGTTGGACAGACATCTGGCTTCATGCCTAGAGATTTGCATGCTCTCATTGCTGATGCTGGCGCAAGCTTAGTCTCCAAGGTAAATGTTCAA GTCGACAAAGATGAGCCCAAAGACTTGAACAGTTCTCTAGGAGGCCAATCACTGCAGAAGAATGAATCATCCAATTATATGCCTCAGGCTGTGGAAAAAG AATATTTAGCTAAAGCTTTGGATCGGTCTAAGAAGAGGAATGCCACAGCACTGGGTACTCCAAAGGTTCCTAATGTGAAATGGGAAGATGTCGGTGGGCT TGAAGATGTGAAGAAATCAATTCTAGATACTGTGCAGTTACCTCTCTTGCATAAAGAGTTGTTTTCATCTGGGTTGCGTAAGCGGTCTGGAGTTCTTCTA TATGGTCCTCCTGGAACAGGGAAAACTTTATTGGCAAAAGCTGTTGCAACAGAGTGTTCCTTAAATTTTCTAAGCGTGAAAGGGCCTGAACTGATCAACA TGTACATAGGTGAGTCAGAGAAAAATGTCCGAGAGATTTTCCAGAAGGCCAGATCAGCACGCCCATGTGTTATATTCTTTGATGAACTTGATTCTCTCGC TCCTGCTCGGGGTGCCTCAGGAGATTCTGGGGGTGTTATGGACAGAGTGGTTTCTCAGATGCTTGCAGAGATTGATGGCCTAAATGATTCTACACAGGAC CTATTTATCATAGGGGCAAGCAACCGACCAGATCTTATTGACCCAGCACTTCTTCGGCCTGGCCGATTCGATAAGCTGCTATATGTTGGAGTTAACTCTG ATGCATCTTATAGGGAGCGGGTCCTTGAAGCACTTACCCGTAAGTTTACATTGCACCAAGATGTCTCTCTTTACTCGATAGCTAGGAAATGCCCCCCAAA CTTCACTGGAGCAGACATGTACGCCTTGTGTGCAGATGCTTGGTTTCATGCTGCAAAGCGAAAGGTTCTGAGTTCAGATCCAGAATCTCCGTCCACTGTT GATCAAGCTGACTCTGTCGTTGTGGAGTACAATGATTTCATTAAGGTGTTGGTGGAACTGTCTCCCTCCCTCTCCATGGCAGAACTTAAGAAGTACGAGT TGCTGCGAGATAAATTCGAAGGACCATCAAACTAA
AA sequence Show only first row Show all	>Potri.014G133000.1 pacid=42762428 polypeptide=Potri.014G133000.1.p locus=Potri.014G133000 ID=Potri.014G133000.1.v4.1 annot-version=v4.1 MVERRRKPLILSSTKILIGSVLRSSPLSSTSSEQNQLPLATDNISPSPSLQLLAGILRLSEDKLASSFDDSALLAISTSILKRLSVTSSSLVLIKNVEAN IERIAQVVALDPPRNNENELKSNANLRISCTTMRLFPTCIFPPDDPSLLLDREIAYLSPLLAFNLGLHVSCLKSLVRRGDESLASLFEVDGETCCDEDVS ANCEDSAISVGLEPLARLPRYASHLRVSFVKIPECGTLESLKGFSSIEAEERQEMIDLALQKYFEVDRCLARGDIFSVRIDWNCNSTVCIPCGQRSQDRS DNIIYFKVVAMEPSDEAVLRVNHTQTALVLGGTVPSSVPPDLLIDGPKGFAPLQGDTVKTLASILTPPLCPSALSSKFRVAVLLYGLAGCGKRTVVRHVA RRLGIHVVEFSCHNLTASSDRKTSVALAQAFRTAQRYSPTILLLRHFDFFRNLMSHEGSPNDQVGLSSEVASVIREFTEPVSEDEDNYSGEKSNDYFLVK DTGKIRHQVLLVAAAESSEGLPPTVRRCFSHEISMGPLTEEHRAEMLSQSLQSGSNLLSNTGIEDAIKDMVGQTSGFMPRDLHALIADAGASLVSKVNVQ VDKDEPKDLNSSLGGQSLQKNESSNYMPQAVEKEYLAKALDRSKKRNATALGTPKVPNVKWEDVGGLEDVKKSILDTVQLPLLHKELFSSGLRKRSGVLL YGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVREIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSTQD LFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDASYRERVLEALTRKFTLHQDVSLYSIARKCPPNFTGADMYALCADAWFHAAKRKVLSSDPESPSTV DQADSVVVEYNDFIKVLVELSPSLSMAELKKYELLRDKFEGPSN

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G03000		PEX6	peroxin 6 (.1)		Potri.014G133000 [exp]	0	1
AT5G05550	Trihelix		sequence-specific DNA binding ...		Potri.010G186200 [exp]	1.73	0.8963
AT5G05680		EMB2789, MOS7	MODIFIER OF SNC1,7, EMBRYO DEF...		Potri.010G189700 [exp]	3.16	0.8956
AT4G35270		NLP2	Plant regulator RWP-RK family ...		Potri.009G166932 [exp]	3.87	0.8921
AT1G80070		EMB33, EMB177, ...	ABNORMAL SUSPENSOR 2, EMBRYO D...		Potri.003G031900 [exp]	10.72	0.8833	Pt-EMB177.4
AT4G23980	ARF	ARF9	auxin response factor 9 (.1.2)		Potri.002G172800 [exp]	10.95	0.8673
AT5G19620		TOC75-V, EMB213...	translocon at the outer envelo...		Potri.003G204900 [exp]	16.73	0.8481
AT3G22170	FAR1_related	FHY3	far-red elongated hypocotyls 3...		Potri.006G020700 [exp]	17.23	0.8596	Pt-FHY3.2
AT2G37650	GRAS	SCL9	GRAS family transcription fact...		Potri.008G057400 [exp]	17.88	0.8424
AT4G30770			Putative membrane lipoprotein ...		Potri.007G103000 [exp]	17.97	0.8435
AT1G73100		SDG19, SUVH3	SET DOMAIN PROTEIN 19, SU(VAR)...		Potri.001G036800 [exp]	19.23	0.8579	SUVH3.4,SDG950

Compare expression of checked genes

Potri.014G133000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.