Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G05760 930 / 0 Xanthine/uracil permease family protein (.1) AT2G34190 765 / 0 Xanthine/uracil permease family protein (.1) AT5G62890 612 / 0 Xanthine/uracil permease family protein (.1.2.3.4) AT1G60030 609 / 0 ATNAT7 ARABIDOPSIS NUCLEOBASE-ASCORBATE TRANSPORTER 7, nucleobase-ascorbate transporter 7 (.1) AT5G49990 595 / 0 Xanthine/uracil permease family protein (.1) AT2G26510 586 / 0 PDE135 pigment defective embryo 135, Xanthine/uracil permease family protein (.1.2) AT1G10540 575 / 0 ATNAT8 nucleobase-ascorbate transporter 8 (.1) AT1G49960 568 / 0 Xanthine/uracil permease family protein (.1) AT1G65550 540 / 0 Xanthine/uracil permease family protein (.1) AT5G25420 362 / 5e-121 Xanthine/uracil/vitamin C permease (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G058800 [exp] 787 / 0 AT2G34190 927 / 0.0 Xanthine/uracil permease family protein (.1) Potri.011G068200 [exp] 784 / 0 AT2G34190 928 / 0.0 Xanthine/uracil permease family protein (.1) Potri.002G129400 [exp] 622 / 0 AT2G26510 751 / 0.0 pigment defective embryo 135, Xanthine/uracil permease family protein (.1.2) Potri.015G072600 [exp] 618 / 0 AT5G62890 908 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Potri.012G077400 [exp] 613 / 0 AT5G62890 914 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Potri.014G035800 [exp] 611 / 0 AT2G26510 734 / 0.0 pigment defective embryo 135, Xanthine/uracil permease family protein (.1.2) Potri.008G146400 [exp] 609 / 0 AT1G60030 881 / 0.0 ARABIDOPSIS NUCLEOBASE-ASCORBATE TRANSPORTER 7, nucleobase-ascorbate transporter 7 (.1) Potri.010G095500 [exp] 607 / 0 AT1G60030 869 / 0.0 ARABIDOPSIS NUCLEOBASE-ASCORBATE TRANSPORTER 7, nucleobase-ascorbate transporter 7 (.1) Potri.009G086800 [exp] 571 / 0 AT1G49960 727 / 0.0 Xanthine/uracil permease family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030014 [exp] 931 / 0 AT2G05760 927 / 0.0 Xanthine/uracil permease family protein (.1) Lus10035311 [exp] 875 / 0 AT2G05760 867 / 0.0 Xanthine/uracil permease family protein (.1) Lus10029238 [exp] 760 / 0 AT2G34190 926 / 0.0 Xanthine/uracil permease family protein (.1) Lus10004228 [exp] 619 / 0 AT5G62890 972 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Lus10002787 [exp] 610 / 0 AT2G26510 748 / 0.0 pigment defective embryo 135, Xanthine/uracil permease family protein (.1.2) Lus10032758 [exp] 608 / 0 AT2G26510 751 / 0.0 pigment defective embryo 135, Xanthine/uracil permease family protein (.1.2) Lus10034125 [exp] 604 / 0 AT1G49960 944 / 0.0 Xanthine/uracil permease family protein (.1) Lus10029191 [exp] 598 / 0 AT5G62890 914 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Lus10010707 [exp] 597 / 0 AT5G62890 916 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Lus10042138 [exp] 583 / 0 AT5G62890 932 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [poplar] [flax] APC PF00860 [poplar] [flax] Xan_ur_permease Permease family
Representative CDS sequence Show only first row Show all	>Potri.014G157800.1 pacid=42763549 polypeptide=Potri.014G157800.1.p locus=Potri.014G157800 ID=Potri.014G157800.1.v4.1 annot-version=v4.1 ATGGCAGACATTATTAGTCACCCTCCCATGGATCAACTCCAGGACCTTGAATACTGCATAGACTCTAACCCTCCTTGGGCTGAAACCATCATATTAGCAT TTCAAAACTACATTGTAATGCTGGGAACAAGCGTAATGATCCCTTCTGTACTCGTTCCGGCAATGGGCGGCACTGATGGTGACAAAGCTCGGGTAATACA GACTCTGCTCTTTGTAGCTGGCATTAACACACTTCTTCAAGCACTTTTCGGTACGAGGTTACCGGCGGTAGTGGGAGGGTCATATGCTTATGTGGTTCCT ATTGCTTATATTATAAGAGACACCTCTTTGCAACGTATTACAGATGGTCATGAAAGATTTATTCAAACGATGCGAGCCATCCAAGGAGCTTTAATTGTAG CCTCTAGCATACAAATCATCCTGGGTTATAGCCAAGTTTGGGGTTTGTTTTCAAGGTTTTTCAGTCCTCTTGGCATGGCACCTGTGGTTGGATTGGTTGG TTTAGGATTGTTTCAAAGAGGATTTCCTGCTTTGGGTAATTGTGTGGAAATTGGGATCCCAATGCTGTTGTTAGTTATTGGATTGTCACAATATCTGAAG CACGTAAGACTATCAAGAAACTTCCCAATATTTGAACGATTTCCAGTGTTGATTTGCATTGCATTTGTCTGGATATATGCTATCATTTTAACTGCCAGTG GAGCTTACCGGGAGAAGCGATTAATAACTCAAAATAGTTGCCGTACAGACAGGGCAAATCTTATATCTACTGCCCCATGGTTCAAGTTCCCATACCCTCT GCAGTGGGGCCCGCCAACATTTTCAGCAGGTCACTCATTTGCCATGATGTCCGCAGTTCTTGTGTCTATGGTCGAGTCAACAGGTGCATACAAGGCAGCA TCTCGTTTGGCTATTGCTACTCCACCTCCTGCATATGTATTGAGTAGAGGAATTGGCTGGCAAGGCATTGGCATATTGCTTGACGGCCTGTTTGGAACAG GCACTGGCTCCACTGTTTCTGTAGAAAATGTGGGACTCCTTGGACTAACTCGAGTTGGAAGTCGCAGAGTTGTTCAAATATCTGCTGGCTTCATGATATT CTTCTCTATCTTAGGGAAATTCGGAGCTGTGTTTGCATCCATACCCTTCCCAATATTTGCAGCGTTGTACTGCGTTCTCTTTGGCCTTGTTGCTTCAGTG GGACTGTCATTTCTTCAGTTCACAAACATGAATTCCATGCGAAACCTCATTATTACTGGGCTGTCACTCTTCCTTGGGATTTCTATCCCCCAGTTCTTCA ATGAATATTGGAATCCCACACACAACGGCCTCGTCCATACTCATGCTGGATGGTTTAATGCTTTTTTGAATGCCATATTCTCATCTCCAGCGACAGTGGG GTTGATTGTGGCGGTGCTTCTCGACAACACAATAGAGGTGGAGAGGTCAAAGAAAGACAGAGGAATGCAATGGTGGGTAAAGTTCAGAACATTCAGGGGA GATAACAGAAATGAGGAGTTCTACACTCTGCCATTCAATCTCAACAGGTTCTTTCCACCTACTTAA
AA sequence Show only first row Show all	>Potri.014G157800.1 pacid=42763549 polypeptide=Potri.014G157800.1.p locus=Potri.014G157800 ID=Potri.014G157800.1.v4.1 annot-version=v4.1 MADIISHPPMDQLQDLEYCIDSNPPWAETIILAFQNYIVMLGTSVMIPSVLVPAMGGTDGDKARVIQTLLFVAGINTLLQALFGTRLPAVVGGSYAYVVP IAYIIRDTSLQRITDGHERFIQTMRAIQGALIVASSIQIILGYSQVWGLFSRFFSPLGMAPVVGLVGLGLFQRGFPALGNCVEIGIPMLLLVIGLSQYLK HVRLSRNFPIFERFPVLICIAFVWIYAIILTASGAYREKRLITQNSCRTDRANLISTAPWFKFPYPLQWGPPTFSAGHSFAMMSAVLVSMVESTGAYKAA SRLAIATPPPAYVLSRGIGWQGIGILLDGLFGTGTGSTVSVENVGLLGLTRVGSRRVVQISAGFMIFFSILGKFGAVFASIPFPIFAALYCVLFGLVASV GLSFLQFTNMNSMRNLIITGLSLFLGISIPQFFNEYWNPTHNGLVHTHAGWFNAFLNAIFSSPATVGLIVAVLLDNTIEVERSKKDRGMQWWVKFRTFRG DNRNEEFYTLPFNLNRFFPPT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G05760			Xanthine/uracil permease famil...		Potri.014G157800 [exp]	0	1
AT5G06300		LOG7	LONELY GUY 7, Putative lysine ...		Potri.005G237600 [exp]	3.74	0.8365
AT1G59530	bZIP	ATBZIP4	basic leucine-zipper 4 (.1)		Potri.002G115900 [exp]	6.63	0.8466
AT2G04100			MATE efflux family protein (.1...		Potri.017G120400 [exp]	8.06	0.7692
AT1G33250			Protein of unknown function (D...		Potri.001G454600 [exp]	12.32	0.7585
AT1G17860			Kunitz family trypsin and prot...		Potri.004G067900 [exp]	12.64	0.8386	Pt-ACTI.1
AT3G63240			DNAse I-like superfamily prote...		Potri.005G212700 [exp]	12.72	0.8370
AT2G13650		GONST1	golgi nucleotide sugar transpo...		Potri.007G106400 [exp]	14.49	0.8089
AT3G24330			O-Glycosyl hydrolases family 1...		Potri.018G072300 [exp]	15.09	0.8394
AT3G13480			unknown protein		Potri.003G221800 [exp]	15.68	0.7867
AT4G05100	MYB	ATMYB74	myb domain protein 74 (.1)		Potri.019G118200 [exp]	16.24	0.8397

Compare expression of checked genes

Potri.014G157800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.