Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07740 582 / 0 HXA2, HXA02, HAC10, ATADA2A, ADA2A homolog of yeast ADA2 2A (.1.2.3.4) AT4G16420 515 / 3e-179 PRZ1, ADA2B PROPORZ1, homolog of yeast ADA2 2B (.1.2.3) AT1G21700 61 / 1e-09 CHB4, ATSWI3C SWITCH/sucrose nonfermenting 3C (.1) AT4G34430 59 / 6e-09 ATSWI3D, CHB3 SWITCH/SUCROSE NONFERMENTING 3D, DNA-binding family protein (.1.2.3.4) AT1G79000 48 / 2e-05 ATHAC1, ATHPCAT2, PCAT2, HAC1 ARABIDOPSIS THALIANA P300/CBP ACETYLTRANSFERASE-RELATED PROTEIN 2, ARABIDOPSIS HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1, histone acetyltransferase of the CBP family 1 (.1.2) AT2G33610 44 / 0.0004 CHB2, ATSWI3B CHROMATIN REMODELING COMPLEX SUBUNIT B, switch subunit 3 (.1) AT1G16710 44 / 0.0005 HAC12 histone acetyltransferase of the CBP family 12 (.1.2) AT3G12980 43 / 0.001 HAC5 ,ATHPCAT4 histone acetyltransferase of the CBP family 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G017300 [exp] 618 / 0 AT4G16420 640 / 0.0 PROPORZ1, homolog of yeast ADA2 2B (.1.2.3) Potri.016G007600 [exp] 599 / 0 AT4G16420 602 / 0.0 PROPORZ1, homolog of yeast ADA2 2B (.1.2.3) Potri.004G135400 [exp] 99 / 5e-24 AT4G16420 102 / 9e-26 PROPORZ1, homolog of yeast ADA2 2B (.1.2.3) Potri.002G080600 [exp] 60 / 4e-09 AT1G21700 679 / 0.0 SWITCH/sucrose nonfermenting 3C (.1) Potri.005G180800 [exp] 59 / 6e-09 AT1G21700 692 / 0.0 SWITCH/sucrose nonfermenting 3C (.1) Potri.009G114900 [exp] 57 / 2e-08 AT4G34430 727 / 0.0 SWITCH/SUCROSE NONFERMENTING 3D, DNA-binding family protein (.1.2.3.4) Potri.004G153300 [exp] 55 / 1e-07 AT4G34430 711 / 0.0 SWITCH/SUCROSE NONFERMENTING 3D, DNA-binding family protein (.1.2.3.4) Potri.007G003400 [exp] 44 / 0.0003 AT1G79000 1847 / 0.0 ARABIDOPSIS THALIANA P300/CBP ACETYLTRANSFERASE-RELATED PROTEIN 2, ARABIDOPSIS HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1, histone acetyltransferase of the CBP family 1 (.1.2) Potri.014G000500 [exp] 44 / 0.0003 AT1G79000 1829 / 0.0 ARABIDOPSIS THALIANA P300/CBP ACETYLTRANSFERASE-RELATED PROTEIN 2, ARABIDOPSIS HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1, histone acetyltransferase of the CBP family 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006383 [exp] 699 / 0 AT3G07740 581 / 0.0 homolog of yeast ADA2 2A (.1.2.3.4) Lus10017553 [exp] 608 / 0 AT3G07740 625 / 0.0 homolog of yeast ADA2 2A (.1.2.3.4) Lus10000540 [exp] 550 / 0 AT3G07740 499 / 2e-174 homolog of yeast ADA2 2A (.1.2.3.4) Lus10012337 [exp] 77 / 8e-17 AT3G07740 64 / 2e-14 homolog of yeast ADA2 2A (.1.2.3.4) Lus10023583 [exp] 77 / 3e-14 AT4G34430 704 / 0.0 SWITCH/SUCROSE NONFERMENTING 3D, DNA-binding family protein (.1.2.3.4) Lus10040472 [exp] 75 / 1e-13 AT4G34430 694 / 0.0 SWITCH/SUCROSE NONFERMENTING 3D, DNA-binding family protein (.1.2.3.4) Lus10026334 [exp] 70 / 3e-12 AT1G21700 556 / 0.0 SWITCH/sucrose nonfermenting 3C (.1) Lus10042329 [exp] 69 / 9e-12 AT4G34430 652 / 0.0 SWITCH/SUCROSE NONFERMENTING 3D, DNA-binding family protein (.1.2.3.4) Lus10042734 [exp] 53 / 5e-07 AT1G21700 736 / 0.0 SWITCH/sucrose nonfermenting 3C (.1) Lus10029695 [exp] 52 / 1e-06 AT1G21700 666 / 0.0 SWITCH/sucrose nonfermenting 3C (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain CL0006 [poplar] [flax] C1 PF00569 [poplar] [flax] ZZ Zinc finger, ZZ type
Representative CDS sequence Show only first row Show all	>Potri.014G166300.1 pacid=42762795 polypeptide=Potri.014G166300.1.p locus=Potri.014G166300 ID=Potri.014G166300.1.v4.1 annot-version=v4.1 ATGGGTCGTTCGCGCGGTCGCCCTCCTTCTTCCGGAACCTCCACTGCCGCCGCCGCCTCTGATGATCCAAACAATAGTAGATCTTCAAAAAGAAAAAAGA CGACTTCCAATGTAGGGAGTATAGAGACTGCATTTCCAGCAGTATATCAAGAAAAGGGTCAAGGGAAACTGGCACTATACCACTGCAATTACTGTCATAA AGACATCTCTGGAATGGTTCGCATTAAGTGTGCAGTGTGTCCTGATTTCGACCTTTGCGTTGAGTGTTTTTCTGTTGGAGCCGAAGTGACTCCTCATAAA AGCAATCATCCCTACAGGGTTATGGACAATCTGTCTTTTCCGCTCTTTCATCCAGACTGGAATACAGATGAAGAGATATTACTTCTAGAGGGCATTGAAA TGTATGGATTTGGGAACTGGACTGAAGTTTCAGAACATGCTGGAACCAAGAGCAAATCTCAATGCATTGATCACTATAATGCTGTATACATGGACTCCCC ATGCTTTCCTCTCCCAGACATGTCTCATGTTATGGGAAAAACAAGAGAGGAGCTCCTTGCAATGGCCAGAGGAAATGTTGAAATGAAGAAAGAGTTGTCT GCTTTTGAGGAGCTTACGCTGAACCAAGAGTCTCCCTTCTCTGTGAAAATTAAAAGTGAGGCATCAAAGAAAGAAGATTTAGCCAGCCATTCGTCATCTA TAGTAAATGCAGAAGTCAGCTCTCATATGGGTTCAAGCAGTGGCAACACATTCTCAGATGCAGTTAAGAAAGCATCTAACGAGGCCCAGATTAAGGATAA GATTAAAGTGGAAGAACCTCTGTCTGACAGGAGTATTCGAGAGAAAAAACCTAGAATTTGCGGAGAGGAAGGACCTTCAATGACAGAGTTAAGTGGCTAT AATTTCAAGAGGCAGGAATTTGAGATTGAATATGATAATGATGCAGAGCAACTACTGGCAGATATGGAATTCAAAGATACTGACACTGATGCTGAGCTTG ACATGAAACTGCAAGTTCTGCGCATTTACTCAAAAAGGCTTGATGAGAGGAAACGGAGGAAAGATTTTATTTTGGAAAGAAATTTGTTTTACCCTGATGC ATTTGAGAAGAACATTTCACCTGAAGAGAAGGAAATATATCAGCGTTACAAGGTCTTCATGAGGTTCCACACAAAAGAAGAGCATGAAGAATTGATGAAG ACTGTTATTGAAGATCATCAGATTATGAAAAGAATACAAGATCTTCAGGAAGCTCGAGCTGCTGGCTGTCAAACAGCTGGTGAGGCCCAAGGATTTATTG AGCAGAAGAGAAAGAAGGAAGCCGAAGAAAGTGCCCAAAGAGCGAAGGAAAGTATGCAAGCAGGCCCAGCAGGTAAACTGTTGCCAAAGCCAAATCATCT TGACAGCAGCCCTCGTGGAGCTGTCAAGTGTTCCACCGTTTTTCATCCTGGTGGCAACGACTCATCTTCAATGATTGCAAAACAAGCAATTTCAAGCACC CTCGATGAGTGGGATATTGCTGGATTCCTAGGGGCTGATTTGCTCTCTGAATCTGATAAGCGTCTTTGTTGTGAGTTGAGAATACTACCTGCACATTATC TCAACATGCTGCACATAATGTCAATAGAGATAACAAAGGGTACTGTTACCAACAAAACCGATGCTCATAGCCTGTTCAAGGTGGAATCAAGCAAAGTGGA TAGAGTATATGATATGTTAGTGAAAAAGGGGATTGCTCTAGCATGA
AA sequence Show only first row Show all	>Potri.014G166300.1 pacid=42762795 polypeptide=Potri.014G166300.1.p locus=Potri.014G166300 ID=Potri.014G166300.1.v4.1 annot-version=v4.1 MGRSRGRPPSSGTSTAAAASDDPNNSRSSKRKKTTSNVGSIETAFPAVYQEKGQGKLALYHCNYCHKDISGMVRIKCAVCPDFDLCVECFSVGAEVTPHK SNHPYRVMDNLSFPLFHPDWNTDEEILLLEGIEMYGFGNWTEVSEHAGTKSKSQCIDHYNAVYMDSPCFPLPDMSHVMGKTREELLAMARGNVEMKKELS AFEELTLNQESPFSVKIKSEASKKEDLASHSSSIVNAEVSSHMGSSSGNTFSDAVKKASNEAQIKDKIKVEEPLSDRSIREKKPRICGEEGPSMTELSGY NFKRQEFEIEYDNDAEQLLADMEFKDTDTDAELDMKLQVLRIYSKRLDERKRRKDFILERNLFYPDAFEKNISPEEKEIYQRYKVFMRFHTKEEHEELMK TVIEDHQIMKRIQDLQEARAAGCQTAGEAQGFIEQKRKKEAEESAQRAKESMQAGPAGKLLPKPNHLDSSPRGAVKCSTVFHPGGNDSSSMIAKQAISST LDEWDIAGFLGADLLSESDKRLCCELRILPAHYLNMLHIMSIEITKGTVTNKTDAHSLFKVESSKVDRVYDMLVKKGIALA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G07740		HXA2, HXA02, HA...	homolog of yeast ADA2 2A (.1.2...		Potri.014G166300 [exp]	0	1
AT2G31600			unknown protein		Potri.017G035200 [exp]	1.41	0.9196
AT3G62470			Pentatricopeptide repeat (PPR)...		Potri.014G121400 [exp]	3.74	0.9104
AT5G41580			RING/U-box superfamily protein...		Potri.003G133000 [exp]	4.89	0.9022
AT1G52380			NUP50 (Nucleoporin 50 kDa) pro...		Potri.001G179100 [exp]	5.91	0.8987
AT1G44835			YbaK/aminoacyl-tRNA synthetase...		Potri.002G085700 [exp]	7.00	0.8779
AT1G32330	HSF	ATHSFA1D	heat shock transcription facto...		Potri.001G138900 [exp]	11.66	0.8745
AT4G15820			unknown protein		Potri.008G222000 [exp]	12.36	0.8729
AT5G62370			Tetratricopeptide repeat (TPR)...		Potri.004G200900 [exp]	12.48	0.8953
AT3G63390			unknown protein		Potri.002G047400 [exp]	13.78	0.8717
AT2G43250			unknown protein		Potri.007G124700 [exp]	16.52	0.8687

Compare expression of checked genes

Potri.014G166300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.