Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48450 884 / 0 SKS3 SKU5 similar 3 (.1) AT4G12420 741 / 0 SKU5 Cupredoxin superfamily protein (.1.2) AT4G25240 713 / 0 SKS1 SKU5 similar 1 (.1) AT5G51480 698 / 0 SKS2 SKU5 similar 2 (.1) AT1G55560 498 / 1e-171 SKS14 SKU5 similar 14 (.1) AT1G55570 498 / 3e-171 SKS12 SKU5 similar 12 (.1) AT3G13400 497 / 6e-171 SKS13 SKU5 similar 13 (.1) AT3G13390 495 / 4e-170 SKS11 SKU5 similar 11 (.1) AT1G21860 492 / 2e-169 SKS7 SKU5 similar 7 (.1) AT4G22010 484 / 3e-166 SKS4 SKU5 similar 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G120300 [exp] 762 / 0 AT4G12420 930 / 0.0 Cupredoxin superfamily protein (.1.2) Potri.003G112700 [exp] 759 / 0 AT4G12420 932 / 0.0 Cupredoxin superfamily protein (.1.2) Potri.012G126400 [exp] 720 / 0 AT4G25240 883 / 0.0 SKU5 similar 1 (.1) Potri.015G127200 [exp] 715 / 0 AT4G25240 882 / 0.0 SKU5 similar 1 (.1) Potri.002G021000 [exp] 526 / 0 AT1G75790 670 / 0.0 SKU5 similar 18 (.1) Potri.001G000500 [exp] 501 / 1e-172 AT1G55570 853 / 0.0 SKU5 similar 12 (.1) Potri.003G224100 [exp] 500 / 4e-172 AT1G55570 855 / 0.0 SKU5 similar 12 (.1) Potri.005G247700 [exp] 499 / 4e-172 AT1G76160 878 / 0.0 SKU5 similar 5 (.1) Potri.001G000600 [exp] 496 / 8e-171 AT1G55570 850 / 0.0 SKU5 similar 12 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025860 [exp] 933 / 0 AT5G48450 882 / 0.0 SKU5 similar 3 (.1) Lus10038239 [exp] 916 / 0 AT5G48450 858 / 0.0 SKU5 similar 3 (.1) Lus10032241 [exp] 762 / 0 AT4G12420 950 / 0.0 Cupredoxin superfamily protein (.1.2) Lus10028921 [exp] 760 / 0 AT4G12420 975 / 0.0 Cupredoxin superfamily protein (.1.2) Lus10004339 [exp] 757 / 0 AT4G12420 979 / 0.0 Cupredoxin superfamily protein (.1.2) Lus10024604 [exp] 752 / 0 AT4G12420 941 / 0.0 Cupredoxin superfamily protein (.1.2) Lus10031722 [exp] 698 / 0 AT4G25240 897 / 0.0 SKU5 similar 1 (.1) Lus10031143 [exp] 698 / 0 AT4G25240 898 / 0.0 SKU5 similar 1 (.1) Lus10038920 [exp] 662 / 0 AT5G51480 851 / 0.0 SKU5 similar 2 (.1) Lus10027207 [exp] 655 / 0 AT5G51480 840 / 0.0 SKU5 similar 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [poplar] [flax] CU_oxidase PF00394 [poplar] [flax] Cu-oxidase Multicopper oxidase CL0026 [poplar] [flax] CU_oxidase PF07731 [poplar] [flax] Cu-oxidase_2 Multicopper oxidase CL0026 [poplar] [flax] CU_oxidase PF07732 [poplar] [flax] Cu-oxidase_3 Multicopper oxidase
Representative CDS sequence Show only first row Show all	>Potri.014G177700.1 pacid=42764455 polypeptide=Potri.014G177700.1.p locus=Potri.014G177700 ID=Potri.014G177700.1.v4.1 annot-version=v4.1 ATGCCCTCTATCGCGCCATGTTCATGCACATATGTAGTGCTAGTGCTATGTTTGGTCACTGGTTCTTTCGCTGGTGACCCTTATGTGTTCTTTGACTGGA CTGTCTCCTACCTCACTGCCTCTCCACTTGGAATTAAACAACAGGTGATTGGCATTAACAGGCAATTTCCAGGACCAATTCTTAATGTCACTACTAACTG GAACGTTGTTGTCAATGTCAAGAATGATCTCGATGAACCTTTGCTTATTACATGGAATGGTGTACAGCACAGGAAAAACTCCTGGCAAGATGGTGTTTTA GGGACTAATTGTCCAATCCCAGCTGGGTGGAATTGGACATATCAGTTCCAAGTCAAAGATCAGATAGGAAGTTTCTTTTACTTTCCTTCCCTCAACTTCC AGAGATCAGCTGGTGGATATGGAGGGGTCATTATAAACAATAGAGATGTTATTCCACTACCATTCGCGGTACCTGATGCAGATGTTGTCCTTTTTATTAG TGACTGGTATACTAAAAGTCATAAGAAACTGAGGAAAGATGTTGAAAATGGAGAAGACCTAGGAGTTCCAGATGGTATTCTTATCAATGGATTTGGTCCG TACAGATATGACGAGGCACTTGTACAAGGAGGCATTGCTTACCAGATAATAAACGTTGAACCTGGAAGCACGTACAGGTTCCGGGTGCATAATGTTGGTA TCTCAACCAGCTTGAATTTCAGAATACAAAACCACAACTTGCTTCTGGTGGAGACTGAAGGATCATACACTGTGCAGCAGAACTACACGAACATGGATAT TCATGTAGGGCAGTCGTACTCGTTCCTGGTTACAATGGATCAAACTGCTAGCAGTGATTACTACATCGTTGCAAGTCCTCGATATGTCAATTCATCCAAA GCTTCTGGAGTTGCTATCCTACACTATGCCAATTCTCAGGGACCTGCTTCAGGTCCTCTTCCTGATCCTCCTAATGAATACGACTCGTTTTTCTCAATGA ATCAAGCAAGATCGATAAGATGGAACGTCTCTGCTGGTGCTGCTCGCCCAAATCCACAGGGATCTTTTAAGTATGGTCAGATTACCGTGACAGATGTATA TGTGATCGTCAATAGACCTGCAGAGCTTATTGATGGGAAGTGGTGTACTACCCTCAATGGCATTTCATATTTACCACCTTCAACACCGCTAAAGCTTGCC CAGCAATATAACATCCCAGGGGTCTACAAGCTTGACTTCCCCAACGCACAGATGAATAGACCTCCCAAAGTTGATACTTCCCTAATCAATGGCACTTTCA AAGGGTTCATGGAGATTATCTTTCAGAACAATGATACCGCTGTCCAGAGCTACCATATGGATGGATATGCATTTTTTGTTGTGGGTATGGATTTTGGAGT GTGGACAGAGAATAGCAGAAGCACGTACAATAAATGGGACGGCGTTGCTCGCAGCACTACACAGGTCTTTCCAGGAGCTTGGACAGCTATTTTAGTTTCT CTTGACAATGCTGGCATTTGGAATCTCCGTTCAGAGAATCTTGACTCATGGTATCTGGGCCAAGAAGTATATTTGAGCATTATGAATCCAGAGATCGACA AATCCGAGGCTCCTTTGCCTGATAATACTATATATTGTGGCATACTCTCATCCTTACAGAAGGACCAGGCTCGGAGATTTAGTTTTTCTGGTGCACCTTC ACTCGCCAGTCCGAGCAGAACCTTTTTGGTTGTGTTGATCATGACCTTATATTTAAGAGTGTTGTTGGGATGA
AA sequence Show only first row Show all	>Potri.014G177700.1 pacid=42764455 polypeptide=Potri.014G177700.1.p locus=Potri.014G177700 ID=Potri.014G177700.1.v4.1 annot-version=v4.1 MPSIAPCSCTYVVLVLCLVTGSFAGDPYVFFDWTVSYLTASPLGIKQQVIGINRQFPGPILNVTTNWNVVVNVKNDLDEPLLITWNGVQHRKNSWQDGVL GTNCPIPAGWNWTYQFQVKDQIGSFFYFPSLNFQRSAGGYGGVIINNRDVIPLPFAVPDADVVLFISDWYTKSHKKLRKDVENGEDLGVPDGILINGFGP YRYDEALVQGGIAYQIINVEPGSTYRFRVHNVGISTSLNFRIQNHNLLLVETEGSYTVQQNYTNMDIHVGQSYSFLVTMDQTASSDYYIVASPRYVNSSK ASGVAILHYANSQGPASGPLPDPPNEYDSFFSMNQARSIRWNVSAGAARPNPQGSFKYGQITVTDVYVIVNRPAELIDGKWCTTLNGISYLPPSTPLKLA QQYNIPGVYKLDFPNAQMNRPPKVDTSLINGTFKGFMEIIFQNNDTAVQSYHMDGYAFFVVGMDFGVWTENSRSTYNKWDGVARSTTQVFPGAWTAILVS LDNAGIWNLRSENLDSWYLGQEVYLSIMNPEIDKSEAPLPDNTIYCGILSSLQKDQARRFSFSGAPSLASPSRTFLVVLIMTLYLRVLLG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G48450		SKS3	SKU5 similar 3 (.1)		Potri.014G177700 [exp]	0	1
AT3G58690			Protein kinase superfamily pro...		Potri.014G143100 [exp]	1.73	0.9067
AT5G13760			Plasma-membrane choline transp...		Potri.001G261900 [exp]	1.73	0.8807
AT3G17090			Protein phosphatase 2C family ...		Potri.008G104300 [exp]	2.23	0.8617
AT3G14310		ATPME3	pectin methylesterase 3 (.1)		Potri.001G162400 [exp]	2.82	0.8762
AT1G53380			Plant protein of unknown funct...		Potri.001G387700 [exp]	3.74	0.8868
					Potri.016G013000 [exp]	4.58	0.8450
					Potri.018G101800 [exp]	4.89	0.8476
AT3G13920		RH4, TIF4A1, EI...	eukaryotic translation initiat...		Potri.001G197900 [exp]	6.32	0.8159
AT3G26430			GDSL-like Lipase/Acylhydrolase...		Potri.010G047900 [exp]	6.92	0.8204
AT3G27580		D6PKL3, ATPK7	D6 PROTEIN KINASE LIKE 3, Prot...		Potri.001G344600 [exp]	7.00	0.7756	PK7.1

Compare expression of checked genes

Potri.014G177700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.