Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46620 503 / 7e-176 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28580 240 / 2e-73 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G25835 231 / 1e-69 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G40010 229 / 9e-69 ASD, AATP1 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) AT3G50930 229 / 3e-68 BCS1 cytochrome BC1 synthesis (.1) AT3G28570 225 / 6e-68 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G57480 226 / 1e-67 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28510 224 / 6e-67 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G18193 221 / 3e-66 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28540 220 / 1e-65 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G020800 [exp] 820 / 0 AT2G46620 536 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.014G102300 [exp] 556 / 0 AT2G46620 598 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.002G175600 [exp] 543 / 0 AT2G46620 627 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G231200 [exp] 298 / 2e-95 AT4G25835 359 / 1e-118 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.009G024400 [exp] 298 / 3e-95 AT4G25835 362 / 4e-120 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.002G032700 [exp] 234 / 9e-72 AT3G50930 437 / 1e-149 cytochrome BC1 synthesis (.1) Potri.006G169000 [exp] 232 / 6e-70 AT5G57480 776 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.018G093600 [exp] 231 / 8e-70 AT5G57480 743 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.007G020600 [exp] 229 / 5e-69 AT2G18193 553 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008834 [exp] 525 / 0 AT2G46620 473 / 2e-163 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10030220 [exp] 520 / 0 AT2G46620 603 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10005991 [exp] 516 / 1e-180 AT2G46620 598 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10022362 [exp] 399 / 5e-137 AT2G46620 362 / 8e-123 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10024275 [exp] 236 / 8e-72 AT3G50940 434 / 2e-149 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015354 [exp] 234 / 7e-71 AT5G40010 598 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10025989 [exp] 229 / 3e-70 AT3G50930 445 / 1e-153 cytochrome BC1 synthesis (.1) Lus10014284 [exp] 229 / 7e-69 AT3G50930 535 / 0.0 cytochrome BC1 synthesis (.1) Lus10042166 [exp] 225 / 2e-67 AT5G40010 526 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10041918 [exp] 226 / 6e-67 AT3G50930 383 / 2e-126 cytochrome BC1 synthesis (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00004 [poplar] [flax] AAA ATPase family associated with various cellular activities (AAA) CL0023 [poplar] [flax] PF14363 [poplar] [flax] AAA_assoc Domain associated at C-terminal with AAA
Representative CDS sequence Show only first row Show all	>Potri.015G007800.1 pacid=42776363 polypeptide=Potri.015G007800.1.p locus=Potri.015G007800 ID=Potri.015G007800.1.v4.1 annot-version=v4.1 ATGTTATTTATCATGAATCTTAGTAGCCCGATTCTTGTTTTTTTCATTACAATCATTGTCTTTTTAGTACTTAGATTTTTGTCTAAAACATCTTTTCTAC ATATTCTTGCTAGGTGTTGGAGATCATTTGAAGACAAGTTTTGTGTTTACCAAATCTTCAAGGTTCCACAATTCAATGATCTTTTTCAAGAAAACCAGTT GTATCACAAGGTTTCCACTTATTTAACCTCACTGCCTGCCATTGAAGATTCTGATTTCACCAACCTGTTTTCGGGTTCGAAAGCGAATGATATCATCCTC CATCTTGACAAGAATCAAGTGATTCATGATAGTTTTCTTGGGGCTAGAGTGCAGTGGAGCAATGAGAAATATTGCGAGGGAAATAATGGCAAGAGAACAT TGGTGTTGAAGTTGAGAAAGAAGGATAAGAGAACGATTCTTCGTCCTTACTTGCAGCATATTCTTTCGGTTGCTGATCAGATTAAGCAGAAGAACGAAGA GATCAAACTGTTTATGAATCTTGAGAAGAAGCCTTATGAAAGTGGACGGTGGACATCAGTTCCTTTCACACATCCAGCTACCATGGATACAGTGGTTATG GATGGAGAATTGAAGAGCAAGGTGAAAGCTGACCTTGAATTGTTTTTGAAGTCTAAGCAGTATTATCACAGATTAGGCCATGTTTGGAAAAGGAGCTATC TCCTTTATGGCGCGTCCGGGACAGGCAAATCCAGTTTCATTGCAGCCATGGCTAGATTCCTCAGTTTTGATGTCTATGACATTGACATCTCCAAGGTTTC TGATGATTCTGATCTGAAAATGCTTCTGCTGCAAACCACGAGTCGGTCCATGATTGTAATTGAGGATCTTGATAGGTTATTGATGGAGAAATCGAAGGAT GTGAGCTTGTCTGGGGTCTTGAATTTCATGGATGGAATTGTTTCGTGTTGCGGCGAGGAGCGTGTGATGGTGTTCACAATGAACTCCAAGGATCAAATTG ATCAATCAGTGCTAAGGCCTGGCAGGGTTGATGTTCACATCCAGTTCCCATTATGTGATTTCTCAGCATTTAAGAGTTTAGCCAATAATTACTTAGGCGT CAAGGAACACAAGCTTTTCTCTCTAGTTGAAGAAATTTTACAAGGAGGATCAAGTTTAACTCCAGCTGAGATTGGTGAAATTATGATCTCCAACCGAAAT TCGCCAAGCCGGGCCTTGAGACTGGTCATTTCAGCTCTGCAGTTCCAAACCAGCAGTGGCGATGCAAGAAGGGCCAGTAAGGTTGGACAAGGAATGAGCG AGAGCGGATCAGCTCGGTCCAGCAGAGACGAGACAGGTGAAACTGGAGGCGTGTTTTGCCAAGAGAGTGGTGCTCATACAGTGAAGGAACTCAAGAAATT GTATGGATTATTAAGGATGGGAAGCAGAAGAAAGGAATCAGTGGATTTGAGTTCTTCAACAGAGAAGCAAGGATCACATCAAGAAGCCTAA
AA sequence Show only first row Show all	>Potri.015G007800.1 pacid=42776363 polypeptide=Potri.015G007800.1.p locus=Potri.015G007800 ID=Potri.015G007800.1.v4.1 annot-version=v4.1 MLFIMNLSSPILVFFITIIVFLVLRFLSKTSFLHILARCWRSFEDKFCVYQIFKVPQFNDLFQENQLYHKVSTYLTSLPAIEDSDFTNLFSGSKANDIIL HLDKNQVIHDSFLGARVQWSNEKYCEGNNGKRTLVLKLRKKDKRTILRPYLQHILSVADQIKQKNEEIKLFMNLEKKPYESGRWTSVPFTHPATMDTVVM DGELKSKVKADLELFLKSKQYYHRLGHVWKRSYLLYGASGTGKSSFIAAMARFLSFDVYDIDISKVSDDSDLKMLLLQTTSRSMIVIEDLDRLLMEKSKD VSLSGVLNFMDGIVSCCGEERVMVFTMNSKDQIDQSVLRPGRVDVHIQFPLCDFSAFKSLANNYLGVKEHKLFSLVEEILQGGSSLTPAEIGEIMISNRN SPSRALRLVISALQFQTSSGDARRASKVGQGMSESGSARSSRDETGETGGVFCQESGAHTVKELKKLYGLLRMGSRRKESVDLSSSTEKQGSHQEA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G46620			P-loop containing nucleoside t...		Potri.015G007800 [exp]	0	1
AT4G21380		ARK3	receptor kinase 3 (.1)		Potri.011G037100 [exp]	2.82	0.7480
AT5G52340		ATEXO70A2	exocyst subunit exo70 family p...		Potri.016G071000 [exp]	14.28	0.7467
AT4G32010	B3	HSL1, HSI2-L1, ...	VP1/ABI3-LIKE 2, HSI2-like 1 (...		Potri.016G136500 [exp]	23.30	0.7171
AT1G10850			Leucine-rich repeat protein ki...		Potri.008G144900 [exp]	25.29	0.7136
AT2G03890		UBDKGAMMA7, ATP...	UBIQUITIN-LIKE DOMAIN KINASE G...		Potri.010G137400 [exp]	33.34	0.6784
AT1G47740			PPPDE putative thiol peptidase...		Potri.002G134200 [exp]	38.72	0.6081
AT1G08720		EDR1, ATEDR1	ENHANCED DISEASE RESISTANCE 1,...		Potri.013G034800 [exp]	43.04	0.6619	Pt-EDR1.2
AT2G16250			Leucine-rich repeat protein ki...		Potri.009G116300 [exp]	47.24	0.6704
AT5G60020		LAC17, ATLAC17	laccase 17 (.1)		Potri.006G087100 [exp]	50.91	0.6782	LAC110b
AT4G14010		RALFL32	ralf-like 32 (.1)		Potri.017G059800 [exp]	56.12	0.6431	RALFL32.1

Compare expression of checked genes

Potri.015G007800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.