Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53350 675 / 0 CLPX CLP protease regulatory subunit X (.1) AT1G33360 563 / 0 ATP-dependent Clp protease (.1) AT5G49840 496 / 5e-170 ATP-dependent Clp protease (.1) AT3G02450 49 / 6e-06 cell division protein ftsH, putative (.1) AT5G20000 49 / 9e-06 RPT6A AAA-type ATPase family protein (.1) AT5G19990 49 / 9e-06 ATSUG1, RPT6A regulatory particle triple-A ATPase 6A (.1) AT5G52882 48 / 2e-05 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G01610 48 / 2e-05 CDC48C, EMB1354 embryo defective 1354, cell division cycle 48C (.1) AT5G64580 47 / 3e-05 EMB3144 EMBRYO DEFECTIVE 3144, AAA-type ATPase family protein (.1) AT1G64110 47 / 3e-05 DAA1 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G015600 [exp] 895 / 0 AT5G53350 709 / 0.0 CLP protease regulatory subunit X (.1) Potri.013G089500 [exp] 601 / 0 AT1G33360 742 / 0.0 ATP-dependent Clp protease (.1) Potri.004G229400 [exp] 527 / 0 AT5G49840 701 / 0.0 ATP-dependent Clp protease (.1) Potri.013G151600 [exp] 52 / 9e-07 AT3G01610 747 / 0.0 embryo defective 1354, cell division cycle 48C (.1) Potri.010G098300 [exp] 49 / 9e-06 AT5G19990 768 / 0.0 regulatory particle triple-A ATPase 6A (.1) Potri.015G026900 [exp] 49 / 1e-05 AT5G52882 1146 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G231700 [exp] 48 / 1e-05 AT1G45000 756 / 0.0 AAA-type ATPase family protein (.1.2) Potri.008G144100 [exp] 48 / 1e-05 AT5G19990 741 / 0.0 regulatory particle triple-A ATPase 6A (.1) Potri.005G059700 [exp] 48 / 2e-05 AT5G64580 1349 / 0.0 EMBRYO DEFECTIVE 3144, AAA-type ATPase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036701 [exp] 672 / 0 AT5G53350 706 / 0.0 CLP protease regulatory subunit X (.1) Lus10037222 [exp] 615 / 0 AT5G53350 651 / 0.0 CLP protease regulatory subunit X (.1) Lus10040561 [exp] 541 / 0 AT1G33360 721 / 0.0 ATP-dependent Clp protease (.1) Lus10000933 [exp] 533 / 0 AT1G33360 711 / 0.0 ATP-dependent Clp protease (.1) Lus10010691 [exp] 450 / 2e-152 AT5G49840 635 / 0.0 ATP-dependent Clp protease (.1) Lus10009233 [exp] 54 / 2e-07 AT2G45500 670 / 0.0 AAA-type ATPase family protein (.1.2) Lus10038001 [exp] 54 / 2e-07 AT2G45500 679 / 0.0 AAA-type ATPase family protein (.1.2) Lus10039722 [exp] 50 / 6e-06 AT3G01610 754 / 0.0 embryo defective 1354, cell division cycle 48C (.1) Lus10031169 [exp] 50 / 6e-06 AT1G79560 1356 / 0.0 EMBRYO DEFECTIVE 36, EMBRYO DEFECTIVE 156, EMBRYO DEFECTIVE 1047, FTSH protease 12 (.1) Lus10031745 [exp] 50 / 7e-06 AT1G79560 1357 / 0.0 EMBRYO DEFECTIVE 36, EMBRYO DEFECTIVE 156, EMBRYO DEFECTIVE 1047, FTSH protease 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00004 [poplar] [flax] AAA ATPase family associated with various cellular activities (AAA) CL0671 [poplar] [flax] AAA_lid PF10431 [poplar] [flax] ClpB_D2-small C-terminal, D2-small domain, of ClpB protein
Representative CDS sequence Show only first row Show all	>Potri.015G012900.4 pacid=42776208 polypeptide=Potri.015G012900.4.p locus=Potri.015G012900 ID=Potri.015G012900.4.v4.1 annot-version=v4.1 ATGGCTTTTGCTGCAGTTAGATGCAAACCCACTAAAGTAACTGCTTCTCAATTCAGATACTTCATGTTCAATTACATGCATGTGGGCAGTCGCTTGTCTA GCTCTCACTGTGCTAACAAAATTGCAACACGGGATGACCATTTTGCAAATACTCCTTATCACTTCACTTCTTTCAAGCCCGTTTCACTTCGTGGGGAATT TGTTGAAAAGAGTACTCAATTGTTGGAAAATATGAGAAGTAGCAGCAGTAGTTCTGATAGAAATTGGAGAGAGACAGTGAGTAGTAATAGTGGTGGTGGG TCTAATTATGGCGACCCACCAGAGGTGTGGCAACCACCTGGTGATGGTGTTGCAAAGATGAGGGTGAGTGATGGAGGCGGGGATTTCAAGGTATGGAGTA GAGGTGGGTCTGGTTCAAAGGATGGGTACTGGGGTGGGTCAAATCTGGGGAGTAGTTTTCCAACACCGAAAGAGATTTGTAAGGCACTTGATAACTTTGT TATTGGACAACGGAGAGCTAAGAAGGTGCTCTCAGTTGCTGTTTACAATCATTACAAGAGAATCTATCTAGAGTCTGTTAAAAAATGGTCCAACACAGAT TCAGGCAATGAAAAATCAGATATCATGGATGATGACGGAGTTGAACTTGAGAAAAGTAACATTCTTCTAATGGGGCCAACAGGTTCAGGGAAGACATTAC TTGCCAAAACCTTGGCACGGTTTGTGAATGTTCCCTTCGTTATTGCAGATGCAACTACTTTGACTCAGGCAGGATATGTTGGGGAGGATGTGGAGTCAAT ATTGTACAAACTACTGACGGCTGCTGACTATAATGTGGCAGCTGCTCAGCAGGGCATCATTTACATTGATGAAATTGACAAGATCACGAAAAAGGCTGAG AGTGTTAACATTAGCAGAGATGTGTCAGGAGAGGGTGTTCAGCAAGCATTATTGAAAATGCTTGAAGGAACAATAGTCAATGTTCCAGAGAAGGGAGCTC GGAAGCATCCTAGAGGTGACAATATTCAGATCGACACCAAGGATATTCTTTTTATATGTGGTGGTGCCTTTATTGATTTGGAGAAGACCATTTCTGAGAG GCGCCAAGATTCTTCGATAGGGTTTGGTGCACCAGTACGTGCAAACATGAGGACAGGTGGTGTTACGAGTACTGCTGTGACATCATCTTTATTGGAGACT GCTGAAAGCAGCGATCTTGTTTCGTATGGTTTGATACCTGAATTTGTTGGAAGATTTCCCATCCTTGTCAGTTTAGCAGCTCTCACTGAGGATCAACTTG TCCAGGTTCTGACAGAACCAAAGAATGCCCTTGGGAAGCAATATAAGAAGTTGTTCCAAATGAATGATGTCAAGCTACATGTCACGGAAAATGCTTTGAG ATCAATTGCTAGAAAAGCAATAACCAAAAATACTGGGGCTCGGGCCTTGCGGTCCATATTAGAGAATATCTTGATGGATTCCATGTATGAGATTCCTGAT GTTAGAACAGGGGATGATATTATAGATGCCGTTGTAGTTGATGAAGTGGCTATTGGATCTGAGGAACGCAGCGTTGGAGCCAAAATCCTCTATGGAAGGG GTGCGTTGGATCACTATCTTTCCAAAGAAAAATTAAAGTGTTCCAAGAAAACCACGGAGGGTTCTGATGGAGAACCAGAGGTGGAATCAGAGCTTCCTTC GATAGTTGCCAGCATGTAA
AA sequence Show only first row Show all	>Potri.015G012900.4 pacid=42776208 polypeptide=Potri.015G012900.4.p locus=Potri.015G012900 ID=Potri.015G012900.4.v4.1 annot-version=v4.1 MAFAAVRCKPTKVTASQFRYFMFNYMHVGSRLSSSHCANKIATRDDHFANTPYHFTSFKPVSLRGEFVEKSTQLLENMRSSSSSSDRNWRETVSSNSGGG SNYGDPPEVWQPPGDGVAKMRVSDGGGDFKVWSRGGSGSKDGYWGGSNLGSSFPTPKEICKALDNFVIGQRRAKKVLSVAVYNHYKRIYLESVKKWSNTD SGNEKSDIMDDDGVELEKSNILLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLTAADYNVAAAQQGIIYIDEIDKITKKAE SVNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDNIQIDTKDILFICGGAFIDLEKTISERRQDSSIGFGAPVRANMRTGGVTSTAVTSSLLET AESSDLVSYGLIPEFVGRFPILVSLAALTEDQLVQVLTEPKNALGKQYKKLFQMNDVKLHVTENALRSIARKAITKNTGARALRSILENILMDSMYEIPD VRTGDDIIDAVVVDEVAIGSEERSVGAKILYGRGALDHYLSKEKLKCSKKTTEGSDGEPEVESELPSIVASM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G53350		CLPX	CLP protease regulatory subuni...		Potri.015G012900 [exp]	0	1
AT5G58870		FTSH9	FTSH protease 9 (.1)		Potri.001G249100 [exp]	2.00	0.9461
AT1G13940			Plant protein of unknown funct...		Potri.006G262600 [exp]	2.44	0.9571
AT1G76430		PHT1;9	phosphate transporter 1;9 (.1)		Potri.002G005500 [exp]	3.46	0.9500	PtrPHT1-9
AT1G69830		ATAMY3, AMY3	alpha-amylase-like 3 (.1)		Potri.010G092900 [exp]	4.00	0.9390
AT4G25450		ABCB28, ATNAP8	ARABIDOPSIS THALIANA NON-INTRI...		Potri.015G136700 [exp]	5.47	0.9415	Pt-NAP8.1
AT5G20280		SPSA1, ATSPS1F	sucrose-phosphate synthase A1,...		Potri.018G124677 [exp]	6.92	0.9308
AT3G20930			RNA-binding (RRM/RBD/RNP motif...		Potri.008G022200 [exp]	10.39	0.9469
AT3G21070		NADK1, ATNADK-1	NAD kinase 1 (.1.2)		Potri.001G256100 [exp]	10.95	0.9310
					Potri.005G100750 [exp]	11.83	0.9180
AT5G52660	MYB		Homeodomain-like superfamily p...		Potri.017G146800 [exp]	12.04	0.9222

Compare expression of checked genes

Potri.015G012900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.