Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27950 211 / 8e-66 AP2_ERF CRF4 cytokinin response factor 4 (.1) AT5G53290 164 / 2e-47 AP2_ERF CRF3 cytokinin response factor 3 (.1) AT4G23750 144 / 4e-40 AP2_ERF TMO3, CRF2 TARGET OF MONOPTEROS 3, cytokinin response factor 2 (.1.2) AT4G11140 134 / 1e-36 AP2_ERF CRF1 cytokinin response factor 1 (.1) AT3G61630 123 / 3e-32 AP2_ERF CRF6 cytokinin response factor 6 (.1) AT2G46310 116 / 9e-30 AP2_ERF CRF5 cytokinin response factor 5 (.1) AT1G71130 106 / 2e-27 AP2_ERF CRF8 cytokinin response factor 8, Integrase-type DNA-binding superfamily protein (.1) AT1G22985 97 / 4e-24 AP2_ERF CRF7 cytokinin response factor 7, Integrase-type DNA-binding superfamily protein (.1) AT1G28370 94 / 5e-23 AP2_ERF AtERF11 ERF domain protein 11 (.1) AT5G61890 96 / 8e-23 AP2_ERF Integrase-type DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G032900 [exp] 554 / 0 AT4G27950 214 / 6e-67 cytokinin response factor 4 (.1) Potri.001G094800 [exp] 161 / 2e-46 AT4G23750 177 / 2e-52 TARGET OF MONOPTEROS 3, cytokinin response factor 2 (.1.2) Potri.014G094500 [exp] 159 / 5e-46 AT2G46310 163 / 3e-48 cytokinin response factor 5 (.1) Potri.002G167400 [exp] 159 / 9e-46 AT4G27950 162 / 3e-47 cytokinin response factor 4 (.1) Potri.003G136300 [exp] 158 / 4e-45 AT4G11140 160 / 1e-46 cytokinin response factor 1 (.1) Potri.019G131300 [exp] 131 / 2e-35 AT4G27950 139 / 2e-38 cytokinin response factor 4 (.1) Potri.013G158500 [exp] 129 / 2e-34 AT4G27950 124 / 1e-32 cytokinin response factor 4 (.1) Potri.009G101900 [exp] 96 / 2e-22 AT4G34410 119 / 2e-32 redox responsive transcription factor 1 (.1) Potri.004G141200 [exp] 96 / 2e-22 AT4G34410 130 / 2e-36 redox responsive transcription factor 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027573 [exp] 214 / 3e-66 AT4G27950 209 / 1e-64 cytokinin response factor 4 (.1) Lus10039324 [exp] 190 / 7e-57 AT4G27950 210 / 8e-65 cytokinin response factor 4 (.1) Lus10033938 [exp] 164 / 2e-47 AT4G23750 201 / 6e-62 TARGET OF MONOPTEROS 3, cytokinin response factor 2 (.1.2) Lus10032353 [exp] 155 / 2e-44 AT4G23750 207 / 2e-64 TARGET OF MONOPTEROS 3, cytokinin response factor 2 (.1.2) Lus10017550 [exp] 151 / 4e-43 AT4G23750 172 / 2e-51 TARGET OF MONOPTEROS 3, cytokinin response factor 2 (.1.2) Lus10018756 [exp] 127 / 6e-32 AT1G64280 506 / 2e-170 SALICYLIC ACID INSENSITIVE 1, NON-INDUCIBLE IMMUNITY 1, ARABIDOPSIS NONEXPRESSER OF PR GENES 1, regulatory protein (NPR1) (.1) Lus10003037 [exp] 103 / 1e-25 AT2G46310 122 / 8e-34 cytokinin response factor 5 (.1) Lus10005149 [exp] 99 / 2e-24 AT4G27950 106 / 6e-28 cytokinin response factor 4 (.1) Lus10014054 [exp] 98 / 2e-23 AT4G34410 139 / 4e-40 redox responsive transcription factor 1 (.1) Lus10011830 [exp] 91 / 6e-22 AT3G23230 134 / 4e-41 Integrase-type DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [poplar] [flax] MBD-like PF00847 [poplar] [flax] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Potri.015G023200.1 pacid=42775016 polypeptide=Potri.015G023200.1.p locus=Potri.015G023200 ID=Potri.015G023200.1.v4.1 annot-version=v4.1 ATGATAGACCAGAGTATCCTATGTCCCATAAAATACACTGAACACAAAAAAGTTACAAAACAATTCACAAAGCCATCCTTGAAGCCTAAAAAGTTACCCT CCGATGACCGGTGCCGCTTACTAGAACCATCAAACCCACAGCCAAGGCTCGTCAGAGTAACAGTTACCGACCATGATGCCACAGACTCTTCTAGTGATGA GGAGGGAGGGTTGTTTGGCCGGCAAAGGGTGAAAAGATACGTGAACGAGATCGACATCCAAGCCAGCTGCAAAGAAACTAATGCCATTACTACTGCTGTT GCCAATAACCGGAAAAGAGGTGTCGGTGATATTCCTCAACGGCCAGCGAAAAAATCTGCTCCTCAATCAACTAACAATGGCAGAAAGTTCCGTGGCGTTC GGCAAAGGCCTTGGGGTAAATGGGCTGCAGAGATTAGAGATCCTGCTAGACGTCAGAGGTTATGGTTAGGGACTTACGACACAGCTGAGGAGGCTGCAAG AGTGTATGATAATGCGGCCATCAAGCTTCGAGGGCCGGATGCTTTAACAAACTTCATCACACCGCCTAGCAGGGAGGAGGAGCAAGAACAAGAGAAAAGT ACAGTGGAAGAACGAGAAGGAGAAGAAAAGAAGAAGCCGGAAATCAATGTCGACACAGTTTCTGGCTCCGGTTATGAATCTGCTGATGAGTCTCACAGCC TGTCATCACCAAAATCTGTGCTCACGTTCAGATTACCTTCGGCTGAATCACACAAACCACCGGCCCATCCCTTCCATGAAGTTGAAAAGGAGCCAAGTTA TCAAGACAATCAAGAAGCGTTCGGGGAGAGCAACTCGACTGACTATCTACCACTAGACGCGCCGTTTCTTGATGATTTTTTCAATTTTGGAACCTCAGGG CCTACACTCTTTGATGATCAAGTTATGGCGACGGCGACAACATCGGTTTTTGAGGAGAGCTTTATGTCTAATCAAGATTTTGGTGACATATTTCTTGACC CACTTCAAGATTTTAGTTCGCTATCATCGGTCTGCCAGGAGGATGATGATTTCTTCCATTTCTTAAACTCGGAACCTCTGGCGGCACTTTGA
AA sequence Show only first row Show all	>Potri.015G023200.1 pacid=42775016 polypeptide=Potri.015G023200.1.p locus=Potri.015G023200 ID=Potri.015G023200.1.v4.1 annot-version=v4.1 MIDQSILCPIKYTEHKKVTKQFTKPSLKPKKLPSDDRCRLLEPSNPQPRLVRVTVTDHDATDSSSDEEGGLFGRQRVKRYVNEIDIQASCKETNAITTAV ANNRKRGVGDIPQRPAKKSAPQSTNNGRKFRGVRQRPWGKWAAEIRDPARRQRLWLGTYDTAEEAARVYDNAAIKLRGPDALTNFITPPSREEEQEQEKS TVEEREGEEKKKPEINVDTVSGSGYESADESHSLSSPKSVLTFRLPSAESHKPPAHPFHEVEKEPSYQDNQEAFGESNSTDYLPLDAPFLDDFFNFGTSG PTLFDDQVMATATTSVFEESFMSNQDFGDIFLDPLQDFSSLSSVCQEDDDFFHFLNSEPLAAL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27950	AP2_ERF	CRF4	cytokinin response factor 4 (....		Potri.015G023200 [exp]	0	1
AT4G27950	AP2_ERF	CRF4	cytokinin response factor 4 (....		Potri.012G032900 [exp]	1.73	0.7367
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.018G134700 [exp]	5.65	0.6466
AT1G11330			S-locus lectin protein kinase ...		Potri.011G039200 [exp]	5.65	0.7135
AT1G71695			Peroxidase superfamily protein...		Potri.005G195600 [exp]	8.12	0.6358
AT1G47490		ATRBP47C	RNA-binding protein 47C (.1.2)		Potri.002G128100 [exp]	8.12	0.6964
AT3G46280			protein kinase-related (.1)		Potri.005G043700 [exp]	8.48	0.6780
AT4G24570		DIC2	dicarboxylate carrier 2 (.1)		Potri.017G045400 [exp]	11.83	0.6755
AT1G50460		ATHKL1, HKL1	hexokinase-like 1 (.1)		Potri.009G050000 [exp]	18.00	0.5927
AT5G42340		PUB15	Plant U-Box 15 (.1)		Potri.004G205000 [exp]	20.14	0.6499
AT2G23770			protein kinase family protein ...		Potri.007G032100 [exp]	21.90	0.6353

Compare expression of checked genes

Potri.015G023200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.