Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27760 553 / 0 FEY3, FEY FOREVER YOUNG, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G53090 539 / 0 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G53100 491 / 4e-175 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G23430 119 / 1e-30 AtTic32-IVa translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT2G37540 115 / 4e-29 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G11410 114 / 1e-28 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G23420 112 / 3e-28 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT1G64590 112 / 7e-28 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G24050 104 / 5e-25 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G50130 97 / 2e-22 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G182000 [exp] 475 / 2e-168 AT4G27760 432 / 1e-151 FOREVER YOUNG, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G083900 [exp] 120 / 3e-31 AT5G02540 452 / 3e-161 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.012G143600 [exp] 118 / 4e-30 AT4G23430 401 / 2e-140 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.003G128800 [exp] 117 / 6e-30 AT4G23420 442 / 5e-157 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.015G146600 [exp] 116 / 2e-29 AT4G23420 444 / 6e-158 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.001G103000 [exp] 115 / 4e-29 AT4G11410 446 / 4e-159 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.003G128700 [exp] 111 / 1e-27 AT4G11410 497 / 4e-179 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G086900 [exp] 103 / 1e-24 AT4G24050 441 / 2e-156 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.015G081102 [exp] 102 / 3e-24 AT5G50130 454 / 2e-161 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028534 [exp] 564 / 0 AT4G27760 530 / 0.0 FOREVER YOUNG, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10009112 [exp] 546 / 0 AT4G27760 510 / 0.0 FOREVER YOUNG, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10028781 [exp] 124 / 3e-32 AT4G11410 470 / 3e-168 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10035481 [exp] 124 / 3e-32 AT4G23430 479 / 6e-172 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10031101 [exp] 123 / 5e-32 AT4G23430 478 / 1e-171 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10035480 [exp] 123 / 5e-32 AT4G11410 444 / 5e-158 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10035479 [exp] 123 / 7e-32 AT4G11410 444 / 2e-157 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10032280 [exp] 123 / 3e-31 AT4G11410 461 / 5e-163 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10038857 [exp] 110 / 3e-27 AT4G23430 436 / 2e-154 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10024685 [exp] 109 / 7e-27 AT4G23430 431 / 4e-152 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00106 [poplar] [flax] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Potri.015G028900.2 pacid=42775218 polypeptide=Potri.015G028900.2.p locus=Potri.015G028900 ID=Potri.015G028900.2.v4.1 annot-version=v4.1 ATGGAAACGACGCCGTCAGAGTCATCTTCTACGCCATCAACAACAGTACCAAAGAAGAAGCAAGGATTAGGATGGGTAGAATGGCTAAGAGGATGGATGT ACATACTATACGAGATGTTATTTCAGCGAATCATGGCTAGTCACTTGCAGAACCCTCTCTCTTTACCTCCTATCAACAATCTCACTTGCATTGTCACCGG ATCCACCAGCGGTATCGGTCTCCAAATCGCCAGGCAATTGGCGGAATCCGGAGCCCATGTTGTTATGGCTGTTAGGAATACCAAAGCAGCGCATGATTTG ATTCATAAATGGCAGTCCGAATGGACTGGACTCGGCCTTCCTCTTAATATCGAGGTGATGGAGCTTGATCTTTTGTCCTTGGAATCGGTTTCGAGGTTTG CCGAAGCCTGGAATGCGCGAATGGGACCTTTGCATGTTCTTATTAATAACGCTGGAATATTTTCCATTAGAGGACCACAAAAGTTCTCAAAGGATGGGTA TGAAGAACACATGCAAGTGAATCATCTAGCTCCAGCATTGCTTTCGATATTGCTTTTGCCATCCTTAATTAGAGGCTCTCCAAGCAGAATTATCAATGTG AATTCAGTTATGCATTATGTTGGCTTCGTTGACACTGAAGACATGAATGTTATTTCTGGAAAGAGAAAGTATACAAGCTTAGTTGGATACACCGGCAGCA AGTTAGCACAGGTCATGTTTAGTAGTGTTCTGCACAGGCGGCTTCCAGCTGAATCTGGCATCAGTGTATTATGTGTTTCCCCTGGAGTAGTCCAAACGAA TGTTGCAAGGGATCTTCCCAAAATTGTGCAAGCTGGTTATCACCTAATACCGTATTTTATCTTCAATGCCCAAGAAGGTTCCAGGAGTGCTCTTTTTTCA GCAACTGATCCTCAGATTCCTGAATACTGTGAGTTGTTAAAATCAGATGACTGGCCAGTTTGTGCATTCATTTCTCAAGATTGTCGACCAACAAATCCTT CCGAAGAAGCACACAACATCGACACCGCGTATGAAGTGTGGGAGAAGACTTTAGAGATGATCGGCCTGCCTTCGGATGCTATAGAGAAGTTAATAGAAGG GGAAGAAGTTAGGTGCCGTTATGGGGAACGTCAGGAGTAG
AA sequence Show only first row Show all	>Potri.015G028900.2 pacid=42775218 polypeptide=Potri.015G028900.2.p locus=Potri.015G028900 ID=Potri.015G028900.2.v4.1 annot-version=v4.1 METTPSESSSTPSTTVPKKKQGLGWVEWLRGWMYILYEMLFQRIMASHLQNPLSLPPINNLTCIVTGSTSGIGLQIARQLAESGAHVVMAVRNTKAAHDL IHKWQSEWTGLGLPLNIEVMELDLLSLESVSRFAEAWNARMGPLHVLINNAGIFSIRGPQKFSKDGYEEHMQVNHLAPALLSILLLPSLIRGSPSRIINV NSVMHYVGFVDTEDMNVISGKRKYTSLVGYTGSKLAQVMFSSVLHRRLPAESGISVLCVSPGVVQTNVARDLPKIVQAGYHLIPYFIFNAQEGSRSALFS ATDPQIPEYCELLKSDDWPVCAFISQDCRPTNPSEEAHNIDTAYEVWEKTLEMIGLPSDAIEKLIEGEEVRCRYGERQE

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27760		FEY3, FEY	FOREVER YOUNG, NAD(P)-binding ...		Potri.015G028900 [exp]	0	1
AT1G50430		ST7R, PA, LE, 7...	PARVA, LEPIDA, DWARF 5, DELTA5...		Potri.010G253200 [exp]	9.38	0.7651	DWF5.2
AT3G27230			S-adenosyl-L-methionine-depend...		Potri.002G024800 [exp]	9.38	0.7948	RAD3.2
AT5G15230		GASA4	GAST1 protein homolog 4 (.1.2)		Potri.017G083000 [exp]	21.40	0.8033	GASA4.2
AT5G55190		RAN3, ATRAN3	RAN GTPase 3 (.1)		Potri.018G030900 [exp]	24.79	0.7717
					Potri.013G133300 [exp]	36.37	0.7829
AT3G56750			unknown protein		Potri.016G035600 [exp]	36.53	0.7932
AT5G65270		AtRABA4a	RAB GTPase homolog A4A (.1)		Potri.005G073000 [exp]	42.33	0.7460	Pt-ATGB3.3
AT4G14420			HR-like lesion-inducing protei...		Potri.005G222200 [exp]	45.72	0.7702
AT5G07240		IQD24	IQ-domain 24 (.1)		Potri.012G139800 [exp]	56.92	0.7667
AT1G08750			Peptidase C13 family (.1.2.3)		Potri.019G014000 [exp]	58.95	0.7403

Compare expression of checked genes

Potri.015G028900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.