Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18330 170 / 2e-48 MYB RVE7, EPR1 REVEILLE 7, EARLY-PHYTOCHROME-RESPONSIVE1, Homeodomain-like superfamily protein (.1.2) AT5G17300 158 / 9e-44 MYB RVE1 REVEILLE 1, Homeodomain-like superfamily protein (.1) AT3G10113 146 / 8e-40 MYB Homeodomain-like superfamily protein (.1) AT5G37260 133 / 1e-35 MYB RVE2, CIR1 REVEILLE 2, CIRCADIAN 1, Homeodomain-like superfamily protein (.1) AT2G46830 123 / 4e-30 MYB AtCCA1, CCA1 circadian clock associated 1 (.1.2) AT1G01060 118 / 3e-28 MYB LHY, LHY1 LATE ELONGATED HYPOCOTYL 1, LATE ELONGATED HYPOCOTYL, Homeodomain-like superfamily protein (.1.2.3.4.5) AT4G01280 102 / 5e-24 MYB Homeodomain-like superfamily protein (.1.2) AT1G01520 101 / 7e-24 MYB ASG4 ALTERED SEED GERMINATION 4, Homeodomain-like superfamily protein (.1) AT3G09600 101 / 9e-24 MYB LCL5 (LHY-CCA1-LIKE5), REVEILLE 8 (RVE8) REVEILLE 8, LHY-CCA1-LIKE5, Homeodomain-like superfamily protein (.1.2) AT5G52660 97 / 5e-22 MYB Homeodomain-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G038300 [exp] 622 / 0 AT1G18330 158 / 5e-44 REVEILLE 7, EARLY-PHYTOCHROME-RESPONSIVE1, Homeodomain-like superfamily protein (.1.2) Potri.004G074300 [exp] 227 / 1e-68 AT5G17300 218 / 5e-66 REVEILLE 1, Homeodomain-like superfamily protein (.1) Potri.017G144800 [exp] 201 / 9e-59 AT5G17300 200 / 2e-59 REVEILLE 1, Homeodomain-like superfamily protein (.1) Potri.002G180800 [exp] 122 / 2e-29 AT1G01060 369 / 1e-117 LATE ELONGATED HYPOCOTYL 1, LATE ELONGATED HYPOCOTYL, Homeodomain-like superfamily protein (.1.2.3.4.5) Potri.014G106800 [exp] 121 / 5e-29 AT1G01060 378 / 3e-121 LATE ELONGATED HYPOCOTYL 1, LATE ELONGATED HYPOCOTYL, Homeodomain-like superfamily protein (.1.2.3.4.5) Potri.014G089300 [exp] 102 / 7e-24 AT4G01280 293 / 2e-98 Homeodomain-like superfamily protein (.1.2) Potri.002G163100 [exp] 102 / 1e-23 AT4G01280 266 / 1e-87 Homeodomain-like superfamily protein (.1.2) Potri.006G133000 [exp] 101 / 1e-23 AT3G09600 379 / 1e-132 REVEILLE 8, LHY-CCA1-LIKE5, Homeodomain-like superfamily protein (.1.2) Potri.016G083900 [exp] 100 / 3e-23 AT3G09600 375 / 4e-131 REVEILLE 8, LHY-CCA1-LIKE5, Homeodomain-like superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026365 [exp] 255 / 2e-80 AT1G18330 193 / 6e-58 REVEILLE 7, EARLY-PHYTOCHROME-RESPONSIVE1, Homeodomain-like superfamily protein (.1.2) Lus10031322 [exp] 252 / 5e-79 AT1G18330 199 / 4e-60 REVEILLE 7, EARLY-PHYTOCHROME-RESPONSIVE1, Homeodomain-like superfamily protein (.1.2) Lus10042292 [exp] 248 / 1e-77 AT1G18330 198 / 5e-60 REVEILLE 7, EARLY-PHYTOCHROME-RESPONSIVE1, Homeodomain-like superfamily protein (.1.2) Lus10031893 [exp] 246 / 9e-77 AT3G10113 207 / 2e-63 Homeodomain-like superfamily protein (.1) Lus10030184 [exp] 119 / 2e-29 AT1G01060 247 / 2e-75 LATE ELONGATED HYPOCOTYL 1, LATE ELONGATED HYPOCOTYL, Homeodomain-like superfamily protein (.1.2.3.4.5) Lus10005134 [exp] 120 / 1e-28 AT1G01060 377 / 5e-121 LATE ELONGATED HYPOCOTYL 1, LATE ELONGATED HYPOCOTYL, Homeodomain-like superfamily protein (.1.2.3.4.5) Lus10010100 [exp] 116 / 2e-27 AT1G01060 399 / 4e-130 LATE ELONGATED HYPOCOTYL 1, LATE ELONGATED HYPOCOTYL, Homeodomain-like superfamily protein (.1.2.3.4.5) Lus10007914 [exp] 105 / 1e-24 AT5G52660 301 / 8e-101 Homeodomain-like superfamily protein (.1.2) Lus10036392 [exp] 103 / 5e-24 AT5G52660 306 / 5e-103 Homeodomain-like superfamily protein (.1.2) Lus10014015 [exp] 101 / 8e-23 AT3G09600 317 / 3e-106 REVEILLE 8, LHY-CCA1-LIKE5, Homeodomain-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.015G030400.1 pacid=42776515 polypeptide=Potri.015G030400.1.p locus=Potri.015G030400 ID=Potri.015G030400.1.v4.1 annot-version=v4.1 ATGGCTGCTGCTGCTAAGGAGCGAATTGAAGGCACAAAGCGAAACTCCTTTGGTGAAGCAAGTGATTGCTGTTCCAATGGCAATGAACAATCTGAAATTG TTCTCCAGCTGAATGAGCTGAACTCATTTGGGAGTGACAATATTCCCAAGGTGAGGAAGCCTTACACTATTACGAAACAAAGGGAAAAATGGACAGAAGA AGAGCACCAGAGATTCCTGGAAGCTTTAAAGCTGTATGGTCGTGGCTGGCGTAAAATACAAGAGCATGTGGGCACCAAAACTGCTGTTCAAATTCGAAGC CATGCTCAAAAAATTTTCTCCAAGGTGGTTTGGGAGTCAAGTGGCGGTAATGAGAGCTCACTCAAACCAATTGAGATACCCCCTCCTCGACCAAAGAGGA AACCTGCACATCCTTATCCTCGTAAATCAGTTGACATCCGCAAAGGAACACCAGCATCTAGTCAATTGGATGGATCTCCATCCCCTAATTCATCAGCATC AGAAAAAGATAACCTATCTCCCACCTCTGTTTTATCTGCATTGGCTTCAGATACTTTGGGAACTGCGCTTTCAGAGCAGCATAACGCATGCTCTTCTCCT ACCTCATGTACCACTGACATGCATTCTATTAGTTTACCACCTAGTGTAAAAGAAGCTGAGCATTTAACATCAAATTCATCCAGAGAAGAGGATAAAGAAA CTTTCTCATTGATCGAAATGTCTTGTTCACCCCTGGAGAAATTTCTGTCCAAGAAATTTGAGTTGGGTTCAGATGACACTGTATGTGCTGAAGGTGATGC CACCAAAGAAGCGTCTTCCACCAGTATAAAGCTTTTTGGAATGACGGTCATGGTAGCAGCTTCACATAAAAAATCTCCTCCAGGTGCAGAATTTGTTTTG TCCATGACATCCAATGAGAATCAAGACAATGCTGATACTGACAAAGAGAAGCCTGCTCAGACACTGCTGCTGAAACAATCAGACACAGAGTTATCACTTG GAATGGAAAATAGTGATCAGAATCAGTTGCCATCTCCAGCGTCAGTTTTTGAATGCACAGAACTACAGAGAGGAACTGCCAACTATTTTGCAACTAACCC TTCCATACCATGGTGGTTTTTAGGCAGTGGTGTGTCATTCTTACCCCCCACATCATATGACCATACCTCCACACCCACACCCACACCCTCTTATATGGCA GAAAGGTCAGAAGAAAAGGAAATTCTTAATGAAAGATCTTGTACTGGTTCGAATGCTGGACCAGTTGGTGAATTGGAGAATGTAGAGAAGAGTTTGGATG TTGTTGATTCTCAATGTCGACAACTGCCATACAAAAGATGTTTAGGAGAGAGAGATGTTAAGTCAACGGTGATTGTATATGAAGAGCGAGAGCGACAAAG AGCTCGAGTATGCTCATAG
AA sequence Show only first row Show all	>Potri.015G030400.1 pacid=42776515 polypeptide=Potri.015G030400.1.p locus=Potri.015G030400 ID=Potri.015G030400.1.v4.1 annot-version=v4.1 MAAAAKERIEGTKRNSFGEASDCCSNGNEQSEIVLQLNELNSFGSDNIPKVRKPYTITKQREKWTEEEHQRFLEALKLYGRGWRKIQEHVGTKTAVQIRS HAQKIFSKVVWESSGGNESSLKPIEIPPPRPKRKPAHPYPRKSVDIRKGTPASSQLDGSPSPNSSASEKDNLSPTSVLSALASDTLGTALSEQHNACSSP TSCTTDMHSISLPPSVKEAEHLTSNSSREEDKETFSLIEMSCSPLEKFLSKKFELGSDDTVCAEGDATKEASSTSIKLFGMTVMVAASHKKSPPGAEFVL SMTSNENQDNADTDKEKPAQTLLLKQSDTELSLGMENSDQNQLPSPASVFECTELQRGTANYFATNPSIPWWFLGSGVSFLPPTSYDHTSTPTPTPSYMA ERSEEKEILNERSCTGSNAGPVGELENVEKSLDVVDSQCRQLPYKRCLGERDVKSTVIVYEERERQRARVCS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G18330	MYB	RVE7, EPR1	REVEILLE 7, EARLY-PHYTOCHROME-...		Potri.015G030400 [exp]	0	1
AT3G07370		ATCHIP, CHIP	carboxyl terminus of HSC70-int...		Potri.002G248700 [exp]	1.73	0.7571
AT5G63480			unknown protein		Potri.012G099200 [exp]	8.48	0.7653
AT2G30360		PKS5, CIPK11, S...	SNF1-RELATED PROTEIN KINASE 3....		Potri.019G128100 [exp]	16.43	0.7191	PKS5.2
AT5G53850			haloacid dehalogenase-like hyd...		Potri.001G399000 [exp]	18.76	0.7527
AT2G27800			Tetratricopeptide repeat (TPR)...		Potri.018G093700 [exp]	29.52	0.7291
AT2G43940		ATHOL3, HOL3	HARMLESS TO OZONE LAYER 3, S-a...		Potri.017G007000 [exp]	31.30	0.7202
AT2G17970			2-oxoglutarate (2OG) and Fe(II...		Potri.005G114800 [exp]	37.10	0.7106
AT5G13470			unknown protein		Potri.003G203900 [exp]	37.30	0.7431
AT1G21150			Mitochondrial transcription te...		Potri.001G035600 [exp]	40.48	0.7274
AT1G14140			Mitochondrial substrate carrie...		Potri.010G165900 [exp]	44.11	0.7321

Compare expression of checked genes

Potri.015G030400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.