Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16560 176 / 1e-50 GARP KAN1, KAN KANADI 1, KANADI, Homeodomain-like superfamily protein (.1) AT1G32240 147 / 5e-40 GARP KAN2, KANADI2 KANADI 2, Homeodomain-like superfamily protein (.1) AT4G17695 132 / 1e-34 GARP KAN3, KANADI3 KANADI 3, Homeodomain-like superfamily protein (.1) AT5G42630 124 / 6e-33 GARP KAN4, KANADI4, ATS KANADI 4, ABERRANT TESTA SHAPE, Homeodomain-like superfamily protein (.1.2) AT2G02060 88 / 2e-19 GARP Homeodomain-like superfamily protein (.1) AT2G38300 88 / 5e-19 GARP myb-like HTH transcriptional regulator family protein (.1) AT1G14600 87 / 5e-19 GARP Homeodomain-like superfamily protein (.1) AT2G42660 84 / 5e-18 GARP Homeodomain-like superfamily protein (.1) AT4G04580 81 / 7e-18 GARP Homeodomain-like superfamily protein (.1) AT2G40260 85 / 1e-17 GARP Homeodomain-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G042100 [exp] 623 / 0 AT5G16560 193 / 6e-57 KANADI 1, KANADI, Homeodomain-like superfamily protein (.1) Potri.017G137600 [exp] 254 / 1e-79 AT5G16560 256 / 8e-81 KANADI 1, KANADI, Homeodomain-like superfamily protein (.1) Potri.004G082400 [exp] 231 / 9e-71 AT5G16560 233 / 7e-72 KANADI 1, KANADI, Homeodomain-like superfamily protein (.1) Potri.003G096300 [exp] 152 / 8e-42 AT1G32240 224 / 1e-69 KANADI 2, Homeodomain-like superfamily protein (.1) Potri.001G137600 [exp] 146 / 2e-39 AT1G32240 216 / 6e-67 KANADI 2, Homeodomain-like superfamily protein (.1) Potri.014G037200 [exp] 128 / 3e-33 AT5G42630 209 / 6e-66 KANADI 4, ABERRANT TESTA SHAPE, Homeodomain-like superfamily protein (.1.2) Potri.002G130200 [exp] 126 / 1e-32 AT5G42630 199 / 6e-62 KANADI 4, ABERRANT TESTA SHAPE, Homeodomain-like superfamily protein (.1.2) Potri.004G010000 [exp] 94 / 2e-21 AT2G02060 120 / 3e-32 Homeodomain-like superfamily protein (.1) Potri.011G006350 [exp] 94 / 2e-21 AT2G02060 115 / 8e-31 Homeodomain-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030989 [exp] 138 / 4e-36 AT1G32240 229 / 6e-71 KANADI 2, Homeodomain-like superfamily protein (.1) Lus10035387 [exp] 131 / 7e-36 AT1G32240 222 / 1e-71 KANADI 2, Homeodomain-like superfamily protein (.1) Lus10032746 [exp] 125 / 5e-32 AT5G42630 194 / 3e-60 KANADI 4, ABERRANT TESTA SHAPE, Homeodomain-like superfamily protein (.1.2) Lus10011660 [exp] 111 / 1e-27 AT5G42630 138 / 2e-39 KANADI 4, ABERRANT TESTA SHAPE, Homeodomain-like superfamily protein (.1.2) Lus10001149 [exp] 89 / 1e-19 AT2G40260 119 / 1e-30 Homeodomain-like superfamily protein (.1) Lus10012239 [exp] 88 / 4e-19 AT2G38300 170 / 3e-50 myb-like HTH transcriptional regulator family protein (.1) Lus10007279 [exp] 84 / 4e-19 AT2G38300 107 / 1e-28 myb-like HTH transcriptional regulator family protein (.1) Lus10029225 [exp] 85 / 5e-19 AT2G38300 110 / 5e-30 myb-like HTH transcriptional regulator family protein (.1) Lus10002207 [exp] 87 / 9e-19 AT2G38300 171 / 9e-51 myb-like HTH transcriptional regulator family protein (.1) Lus10040945 [exp] 86 / 4e-18 AT2G40260 159 / 2e-45 Homeodomain-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.015G031600.1 pacid=42775833 polypeptide=Potri.015G031600.1.p locus=Potri.015G031600 ID=Potri.015G031600.1.v4.1 annot-version=v4.1 ATGTCCCAGAAAGGAATTTTTGATAAACAGTCTCTGAATCTGATTCCAGACCTTTCACTGCACATAAGCCTTCCAAACAGTGCTCCTTCTTCAATTTGCA CTGGCACAAACGATGGTGATTCGGCTTTTGATATTTGGCGCAAAGATGATGGACTAATAAAATCACATAGTGATAGTTCTATAAGAGTTGGGTCTCAAAT ATCAGACACTGAACTTTCTCTTGCAAATCCAACAAGCACTGCTGCTTTGGAGGCAGAGAGTCCTTGGAGAATAAACTACGGTGGAAGAGGGACTGGCGGT CTTGAGGATCATCACCCTGATCGAGCAAGGCAAAGAAATCTTCTTCTTCAACGTTCTAGTAATGGCCAAATGAGTCATATAAACCATGGGATCTCAGTTC TTGATGTCACAGGATCGAAGCCTATAAAGGGGATTCCAGTTTACAATAGCTGGAATAGTTCAGGAGATCATAATATTGATCCTAGATTTAGCTTTAACCA AATGCCTTATTCACCATCTTGCACCCCCTACTCTTCTTCAAATTCTTCAGCTGATCACCATACCTCCACTTTGCAAGCTTACAGAATGGGTACTTCTGCA CCAAGATTCAATGGAATGTCAATGGAGTCACTGAGAGTTCCACAATATCATCAATACCATCAATATGGAGCTGCTGCAGGAGTAGGGGGTGGTGGTGCGG AGCTATATGGTAGTAGTGGCATGATTCGATCAAGATTTATGCCAAAGTTACATAGCAAGAGGAACATGAGAGCTCCAAGAATGCGTTGGACTAGCTCACT CCATTCTCGTTTTGTTCATGCTGTTGAGCTCCTTGGTGGCCATGAAAGGGCAACTCCAAAGTCAGTTCTAGAGCTCATGGATGTCAAAGATCTAACGCTT GCTCATGTTAAAAGTCATTTACAGATGTACAGAACTGTTAAAAGCACTGACTGCAGACCTACAGCTTCCTCAGATGGATCTGGTGATGAAGATTTCGTTT CTGGAACAGCTTGCATTACCCAAAATGCTACCCATTTACTCAACCAGAAAGGAGGTTCAAAGGTGCTTAATTTGCAGCATGATAATGGCTGCCCTAATTC TCCGACTACTCTATGGAGCAACTCTTCTAGCAAAGGAGGATGGATGCGTAGCAGTTCAAGAGATCTAGATGGGGTTAGGGTAGAAACCCTACCATCTCAA CAAGCATCAGGAAACAAATTGGAAATAATTGCTGAATCAAGAAGCTTTCCAGGATACAACCAAGAACTCAAGAATCCAATCTTGGAGTTTTCCTTGGGAA GACCAGACGGGCAAAACAAAGAACATGACTGA
AA sequence Show only first row Show all	>Potri.015G031600.1 pacid=42775833 polypeptide=Potri.015G031600.1.p locus=Potri.015G031600 ID=Potri.015G031600.1.v4.1 annot-version=v4.1 MSQKGIFDKQSLNLIPDLSLHISLPNSAPSSICTGTNDGDSAFDIWRKDDGLIKSHSDSSIRVGSQISDTELSLANPTSTAALEAESPWRINYGGRGTGG LEDHHPDRARQRNLLLQRSSNGQMSHINHGISVLDVTGSKPIKGIPVYNSWNSSGDHNIDPRFSFNQMPYSPSCTPYSSSNSSADHHTSTLQAYRMGTSA PRFNGMSMESLRVPQYHQYHQYGAAAGVGGGGAELYGSSGMIRSRFMPKLHSKRNMRAPRMRWTSSLHSRFVHAVELLGGHERATPKSVLELMDVKDLTL AHVKSHLQMYRTVKSTDCRPTASSDGSGDEDFVSGTACITQNATHLLNQKGGSKVLNLQHDNGCPNSPTTLWSNSSSKGGWMRSSSRDLDGVRVETLPSQ QASGNKLEIIAESRSFPGYNQELKNPILEFSLGRPDGQNKEHD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G16560	GARP	KAN1, KAN	KANADI 1, KANADI, Homeodomain-...		Potri.015G031600 [exp]	0	1
AT4G31980			unknown protein		Potri.003G209300 [exp]	1.73	0.9612
AT4G37650	GRAS	SGR7, SHR	SHORT ROOT, SHOOT GRAVITROPISM...		Potri.007G132000 [exp]	2.82	0.9474
AT1G64080		MAKR2	MEMBRANE-ASSOCIATED KINASE REG...		Potri.001G098000 [exp]	3.31	0.9371
AT5G59810		ATSBT5.4	Subtilase family protein (.1)		Potri.001G468800 [exp]	3.74	0.9513
AT2G46410	MYB	CPC	CAPRICE, Homeodomain-like supe...		Potri.004G015100 [exp]	5.19	0.9403
AT1G06490		CalS7, ATGSL7, ...	callose synthase 7, Arabidopsi...		Potri.002G058700 [exp]	5.91	0.9439	ATGSL11.2
AT2G24520		AHA5	H\(+\)-ATPase 5, H\(+\)-ATPase...		Potri.018G006000 [exp]	7.00	0.9418	Pt-VHA1.1
AT3G54220	GRAS	SGR1, SCR	SHOOT GRAVITROPISM 1, SCARECRO...		Potri.016G143833 [exp]	7.34	0.9486
AT5G62360			Plant invertase/pectin methyle...		Potri.015G128300 [exp]	8.00	0.9408
AT2G14830			Regulator of Vps4 activity in ...		Potri.004G038600 [exp]	8.30	0.9215

Compare expression of checked genes

Potri.015G031600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.