Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18140 840 / 0 LAC1, ATLAC1 laccase 1 (.1) AT2G29130 612 / 0 LAC2, ATLAC2 laccase 2 (.1) AT5G60020 608 / 0 LAC17, ATLAC17 laccase 17 (.1) AT5G03260 590 / 0 LAC11 laccase 11 (.1) AT2G38080 578 / 0 ATLMCO4, IRX12, LAC4 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) AT5G01190 555 / 0 LAC10 laccase 10 (.1) AT2G30210 552 / 0 LAC3 laccase 3 (.1) AT5G05390 546 / 0 LAC12 laccase 12 (.1) AT2G40370 534 / 0 LAC5 laccase 5 (.1) AT5G58910 526 / 0 LAC16 laccase 16 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G040600 [exp] 1134 / 0 AT1G18140 840 / 0.0 laccase 1 (.1) Potri.012G048900 [exp] 1053 / 0 AT1G18140 858 / 0.0 laccase 1 (.1) Potri.015G040700 [exp] 1002 / 0 AT1G18140 726 / 0.0 laccase 1 (.1) Potri.006G087500 [exp] 635 / 0 AT5G60020 806 / 0.0 laccase 17 (.1) Potri.001G054600 [exp] 629 / 0 AT5G60020 905 / 0.0 laccase 17 (.1) Potri.001G401300 [exp] 626 / 0 AT5G60020 904 / 0.0 laccase 17 (.1) Potri.001G341600 [exp] 622 / 0 AT5G60020 896 / 0.0 laccase 17 (.1) Potri.007G023300 [exp] 616 / 0 AT5G03260 889 / 0.0 laccase 11 (.1) Potri.001G401100 [exp] 615 / 0 AT5G60020 881 / 0.0 laccase 17 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009645 [exp] 852 / 0 AT1G18140 801 / 0.0 laccase 1 (.1) Lus10040936 [exp] 828 / 0 AT1G18140 790 / 0.0 laccase 1 (.1) Lus10009827 [exp] 750 / 0 AT1G18140 696 / 0.0 laccase 1 (.1) Lus10019122 [exp] 630 / 0 AT5G60020 938 / 0.0 laccase 17 (.1) Lus10034439 [exp] 629 / 0 AT5G60020 943 / 0.0 laccase 17 (.1) Lus10034614 [exp] 622 / 0 AT5G60020 934 / 0.0 laccase 17 (.1) Lus10026512 [exp] 614 / 0 AT5G03260 919 / 0.0 laccase 11 (.1) Lus10002227 [exp] 612 / 0 AT5G03260 926 / 0.0 laccase 11 (.1) Lus10023189 [exp] 610 / 0 AT5G03260 930 / 0.0 laccase 11 (.1) Lus10024378 [exp] 610 / 0 AT5G60020 853 / 0.0 laccase 17 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [poplar] [flax] CU_oxidase PF00394 [poplar] [flax] Cu-oxidase Multicopper oxidase CL0026 [poplar] [flax] CU_oxidase PF07731 [poplar] [flax] Cu-oxidase_2 Multicopper oxidase CL0026 [poplar] [flax] CU_oxidase PF07732 [poplar] [flax] Cu-oxidase_3 Multicopper oxidase
Representative CDS sequence Show only first row Show all	>Potri.015G040400.1 pacid=42776491 polypeptide=Potri.015G040400.1.p locus=Potri.015G040400 ID=Potri.015G040400.1.v4.1 annot-version=v4.1 ATGGAGGGTGTGCGCAAACATTATGGTATTTTGCTAGCATCACTAGCTATAATCGCCGCGGCGTTACCGTGTTGTTCTTCACAAACAACTAGAAGGTTTC AATTTAATGTTGAGTGGAAGCAGGTGACACGTTTGTGCACAACGAAGCAACTTCTAATGGTGAATGGGCAGTATCCAGGCCCAACCATAGCTGTTCATGA AGGTGATAATGTTGAGATTAACGTCAAAAATCAGATTGCTCAGAATACTACCCTTCATTGGCATGGTGTAAGGCAGCTAAGAACAGGATGGGCTGATGGA CCAGCTTACGTTACCCAATGCCCCATTAGAGGAGGCCAGTCCTACACCTACAAGTTCACTGTTACTGGCCAAAGAGGGACTCTACTATGGCATGCTCACT ATGCTTGGCAAAGGGCATCTGTTTACGGTGCTTTCATCATCTACCCTCGCATCCCATATCCATTCTCACACCCAATTCAAGCTGAAATCCCCATCATTTT TGGAGAATGGTGGAATGGGGATCCAGATGAAGTTGAAAACAGAATGATGTTAACAGGAGCAGGGCCAGACAGTTCCAATGCCTACACCATCAATGGATTG CCAGGACCTCTCTATCCTTGCTCTAATCAAGATACTTATATTCAGACGGTGGAATATGGCAAGACCTACATGCTTAGGATCATCAATGCAGCTCTAGCGG ATGAGCTCTTCTTTGCGATAGCGAAACATACGTTGACAGTAGTGGAGGTTGATGCAGTCTACACTAAACCCTTCGCAACCACCTCCATTATGATTGCTCC TGGACAAACCACTACTGTTTTAATGACAGCAAACCAAGTTCCAGACTTCACAGGCATGTTTGTCATGGCAGCAAGGCCTTATCTTACCTCTGTGTTCCCC TTCAACAACTCCACCACAATCGGCTTCTTGAGGTACAAAAATGCAAGGACCTGGAAAGGAAAATCCCCAGTTGATCCGAGCAGCCTTAAACTTCACAACC TTCCAGCAATGGAAGACACTGCATTTGCCACAAAATTTTCGGACAAGATTAAAAGTCTTGCATCTCCTCAGTACCCATGTAATGTGCCTAAAACAATTGA CAAACGAGTGATAACAACTATAAGTCTTAACATTCAAGACTGTCCAGAAAACAAAACCTGCTCGGGCTACAAGGGCAAGAGTTTCTTCGCTTCAATGAAC AACCAATCATTCGTTCGCCCTTCCATCTCAATATTGGAAAGCTATTACAAGAACCTCACCACCGGTAGTTTCTCCTCTGATTTCCCAGAAAAACCACCAA ATAATTTTGATTATACTGGTGGGGATCCATTGACTCAAAACATGAACACGAAATTCGGCACGAAACTTATAGTAGTGCCTTATGGCACAAACGTAGAAAT TGTGTTGCAAGACACAAGTTTTGTTAATTTGGAGAACCATCCAATTCATGTCCATGGTCACAACTTCTTCATTGTTGGGAGTGGATTTGGAAACTTCAAC GAGGCCAGGGATCCGAAAAGATACAATCTTGTCGATCCTCCAGAAAGGAATACAGTGGCAGTTCCAAGTGGGGGATGGGCTGCTATTAGGATCAAGGCAG ATAATCCAGGAGTTTGGTTCATACATTGTCACCTTGAGCAACATACTTCATGGGGTCTAGCAACTGGCTTTATTGTCCAAAATGGTCAGGGACCATCTCA AAGCATGCTTCCCCCCCCTCAAGATCTCCCCTCCTGCTAA
AA sequence Show only first row Show all	>Potri.015G040400.1 pacid=42776491 polypeptide=Potri.015G040400.1.p locus=Potri.015G040400 ID=Potri.015G040400.1.v4.1 annot-version=v4.1 MEGVRKHYGILLASLAIIAAALPCCSSQTTRRFQFNVEWKQVTRLCTTKQLLMVNGQYPGPTIAVHEGDNVEINVKNQIAQNTTLHWHGVRQLRTGWADG PAYVTQCPIRGGQSYTYKFTVTGQRGTLLWHAHYAWQRASVYGAFIIYPRIPYPFSHPIQAEIPIIFGEWWNGDPDEVENRMMLTGAGPDSSNAYTINGL PGPLYPCSNQDTYIQTVEYGKTYMLRIINAALADELFFAIAKHTLTVVEVDAVYTKPFATTSIMIAPGQTTTVLMTANQVPDFTGMFVMAARPYLTSVFP FNNSTTIGFLRYKNARTWKGKSPVDPSSLKLHNLPAMEDTAFATKFSDKIKSLASPQYPCNVPKTIDKRVITTISLNIQDCPENKTCSGYKGKSFFASMN NQSFVRPSISILESYYKNLTTGSFSSDFPEKPPNNFDYTGGDPLTQNMNTKFGTKLIVVPYGTNVEIVLQDTSFVNLENHPIHVHGHNFFIVGSGFGNFN EARDPKRYNLVDPPERNTVAVPSGGWAAIRIKADNPGVWFIHCHLEQHTSWGLATGFIVQNGQGPSQSMLPPPQDLPSC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G18140		LAC1, ATLAC1	laccase 1 (.1)		Potri.015G040400 [exp]	0	1
AT2G17040	NAC	ANAC036	NAC domain containing protein ...		Potri.004G181900 [exp]	5.83	0.9526
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Potri.012G009200 [exp]	6.24	0.9205
AT1G25390			Protein kinase superfamily pro...		Potri.010G121400 [exp]	7.34	0.9335
AT5G38260			Protein kinase superfamily pro...		Potri.017G117010 [exp]	7.41	0.9396
AT1G25390			Protein kinase superfamily pro...		Potri.010G121025 [exp]	7.93	0.9485
AT1G25390			Protein kinase superfamily pro...		Potri.010G121100 [exp]	8.71	0.9479
AT2G31180	MYB	ATMYB14, Myb14a...	ARABIDOPSIS THALIANA MYB DOMAI...		Potri.019G018200 [exp]	11.95	0.9260
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Potri.008G205200 [exp]	12.36	0.9274	Pt-IFS1.42
AT1G76690		OPR2, ATOPR2	ARABIDOPSIS 12-OXOPHYTODIENOAT...		Potri.013G102700 [exp]	12.92	0.8334
AT4G12735			unknown protein		Potri.001G226700 [exp]	13.85	0.9163

Compare expression of checked genes

Potri.015G040400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.