Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18140 840 / 0 LAC1, ATLAC1 laccase 1 (.1) AT5G60020 612 / 0 LAC17, ATLAC17 laccase 17 (.1) AT2G29130 610 / 0 LAC2, ATLAC2 laccase 2 (.1) AT5G03260 580 / 0 LAC11 laccase 11 (.1) AT2G38080 575 / 0 ATLMCO4, IRX12, LAC4 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) AT2G30210 553 / 0 LAC3 laccase 3 (.1) AT5G05390 550 / 0 LAC12 laccase 12 (.1) AT5G01190 545 / 0 LAC10 laccase 10 (.1) AT2G40370 543 / 0 LAC5 laccase 5 (.1) AT5G58910 518 / 8e-180 LAC16 laccase 16 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G040400 [exp] 1134 / 0 AT1G18140 840 / 0.0 laccase 1 (.1) Potri.012G048900 [exp] 1051 / 0 AT1G18140 858 / 0.0 laccase 1 (.1) Potri.015G040700 [exp] 1001 / 0 AT1G18140 726 / 0.0 laccase 1 (.1) Potri.006G087500 [exp] 635 / 0 AT5G60020 806 / 0.0 laccase 17 (.1) Potri.001G054600 [exp] 630 / 0 AT5G60020 905 / 0.0 laccase 17 (.1) Potri.001G401300 [exp] 625 / 0 AT5G60020 904 / 0.0 laccase 17 (.1) Potri.001G341600 [exp] 624 / 0 AT5G60020 896 / 0.0 laccase 17 (.1) Potri.001G401100 [exp] 615 / 0 AT5G60020 881 / 0.0 laccase 17 (.1) Potri.007G023300 [exp] 612 / 0 AT5G03260 889 / 0.0 laccase 11 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009645 [exp] 844 / 0 AT1G18140 801 / 0.0 laccase 1 (.1) Lus10040936 [exp] 825 / 0 AT1G18140 790 / 0.0 laccase 1 (.1) Lus10009827 [exp] 736 / 0 AT1G18140 696 / 0.0 laccase 1 (.1) Lus10019122 [exp] 626 / 0 AT5G60020 938 / 0.0 laccase 17 (.1) Lus10034439 [exp] 625 / 0 AT5G60020 943 / 0.0 laccase 17 (.1) Lus10034614 [exp] 623 / 0 AT5G60020 934 / 0.0 laccase 17 (.1) Lus10024378 [exp] 613 / 0 AT5G60020 853 / 0.0 laccase 17 (.1) Lus10026512 [exp] 607 / 0 AT5G03260 919 / 0.0 laccase 11 (.1) Lus10002227 [exp] 602 / 0 AT5G03260 926 / 0.0 laccase 11 (.1) Lus10023189 [exp] 602 / 0 AT5G03260 930 / 0.0 laccase 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [poplar] [flax] CU_oxidase PF00394 [poplar] [flax] Cu-oxidase Multicopper oxidase CL0026 [poplar] [flax] CU_oxidase PF07731 [poplar] [flax] Cu-oxidase_2 Multicopper oxidase CL0026 [poplar] [flax] CU_oxidase PF07732 [poplar] [flax] Cu-oxidase_3 Multicopper oxidase
Representative CDS sequence Show only first row Show all	>Potri.015G040600.2 pacid=42774909 polypeptide=Potri.015G040600.2.p locus=Potri.015G040600 ID=Potri.015G040600.2.v4.1 annot-version=v4.1 ATGGAGGCCGTGCGCAAACATTATGGTATTTTGCTAGCATCACTAGCTATAATCGCCGCGGCGTTACCGTGTTGTTCTTCAGAAACAACTAGAAGGTTTC AATTTAATGTTGAGTGGAAGAAGGTGACACGTTTGTGCACAACGAAGCAGCTTCTAATGGTGAACGGGCAGTATCCAGGCCCAACCATAGCTGTTCATGA AGGTGATAACGTTGAGATTAAGGTCAAAAATCGGATTGCTCAGAATACTACCCTTCATTGGCATGGTGTAAGGCAGCTAAGAACAGGATGGGCTGATGGA CCAGCTTACATTACCCAATGCCCCATCAGAGGAGGCCAGTCCTACACCTACAAGTTCACTGTTACTGGCCAAAGAGGGACACTACTATGGCATGCTCACT ATGCTTGGCAAAGGGCATCTGTTTACGGTGCTTTAATCATCTACCCTCGCATCCCATATCCATTCTCACACCCAATTCAAGCTGAAATCCCCATCATTTT TGGAGAATGGTGGAATGGGGATCCAGATGAAATTGAAAAAACAATGCTGTTAACAGGAGGAGGGCCAGACAGTTCCAATGCCTACACCATAAATGGATTA CCAGGACCTCTCTATCCTTGCTCTAACCAAGATACTTTTATTCAGACGGTGGAATATGGCAAGACCTATTTGCTTAGGATCATCAATGCAGCTCTAACAA ATGAGCTCTTCTTTGCGATAGCGAAACATACGTTGACAGTAGTGGAGGTTGATGCAGTCTACACTAAACCCTTCGCAACCACTTCCATTATGATTGCTCC TGGACAGACCACTACTGTTTTAATGACTGCAAACCAAGTTCCAGACTTCACAGGCATGTTTGTCATGGCAGCAAGGCCTTATCTTACCTCTGTGTTCCCC TTCAACAACTCCACCACAATCGGCTTCTTGAGGTACAAAAATGCAAGGACCTGGAAAGGAAAATCCCCAGTTGATCCGAGCAGCCTTAGACTTCACAACC TTCCAGCAATGGAAGACACTGCATTTGCCACAAAATTTTCGGACAAGATTAAAAGTCTTGCATCTCCTCAGTACCCATGTAATGTGCCTAAAACAATTGA CAAACGAGTGATAACAACTATAAGTCTTAACCTTCAAGACTGTCCAGAAAACAAAACCTGCTTGGGCTTAAAGGGCAAGAGTTTCTTCGCTTCAATGAAC AACCAATCATTCGTTCGCCCTTCCATCTCAATATTGGAAAGCTATTACAAGAACCTCACCACCAGTAGTTTCTCCTCTGATTTCCCACAAAAACCACCAA ATAATTTTGATTATACTGGTGGGCATCCATTGACTCAAAACATGAACACGAAATTCGGCACGAAACTTTTAGTACTGCCTTATGGCACAAACATAGAAAT TGTGTTGCAAGACACAAGTTTTCTTAATTTGGAGAACCATCCAATTCATGTCCATGGTCACAACTTCTTCATTGTTGGGAGTGGATTTGGAAACTTCAAC GAAGCCAGGGATCCGAAAAGATACAATCTTGTCGATCCTCCAGAAAGGAACACAGTGGCAGTTCCAAGTGGGGGATGGGCTGCTATTAGGATCAAGGCAG ATAATCCAGGAGTTTGGTTCGTACATTGTCACCTTGAGCAACATACTTCATGGGGTCTAGCAACTGGCTTTATTGTCCAAAATGGTCAGGGACCATCTCA AAGCTTGCTTCCCCCCCCTCATGATCTCCCCTCCTGCTAA
AA sequence Show only first row Show all	>Potri.015G040600.2 pacid=42774909 polypeptide=Potri.015G040600.2.p locus=Potri.015G040600 ID=Potri.015G040600.2.v4.1 annot-version=v4.1 MEAVRKHYGILLASLAIIAAALPCCSSETTRRFQFNVEWKKVTRLCTTKQLLMVNGQYPGPTIAVHEGDNVEIKVKNRIAQNTTLHWHGVRQLRTGWADG PAYITQCPIRGGQSYTYKFTVTGQRGTLLWHAHYAWQRASVYGALIIYPRIPYPFSHPIQAEIPIIFGEWWNGDPDEIEKTMLLTGGGPDSSNAYTINGL PGPLYPCSNQDTFIQTVEYGKTYLLRIINAALTNELFFAIAKHTLTVVEVDAVYTKPFATTSIMIAPGQTTTVLMTANQVPDFTGMFVMAARPYLTSVFP FNNSTTIGFLRYKNARTWKGKSPVDPSSLRLHNLPAMEDTAFATKFSDKIKSLASPQYPCNVPKTIDKRVITTISLNLQDCPENKTCLGLKGKSFFASMN NQSFVRPSISILESYYKNLTTSSFSSDFPQKPPNNFDYTGGHPLTQNMNTKFGTKLLVLPYGTNIEIVLQDTSFLNLENHPIHVHGHNFFIVGSGFGNFN EARDPKRYNLVDPPERNTVAVPSGGWAAIRIKADNPGVWFVHCHLEQHTSWGLATGFIVQNGQGPSQSLLPPPHDLPSC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G18140		LAC1, ATLAC1	laccase 1 (.1)		Potri.015G040600 [exp]	0	1
AT1G11330			S-locus lectin protein kinase ...		Potri.011G039400 [exp]	1.41	0.9711
AT4G15350		CYP705A2	"cytochrome P450, family 705, ...		Potri.009G066200 [exp]	3.16	0.9540
AT3G44350	NAC	ANAC061	NAC domain containing protein ...		Potri.009G019200 [exp]	4.89	0.9361
AT3G57680			Peptidase S41 family protein (...		Potri.006G055400 [exp]	6.00	0.9527
					Potri.015G140800 [exp]	6.63	0.9288
AT2G15960			unknown protein		Potri.004G148200 [exp]	9.79	0.9227
AT1G02260			Divalent ion symporter (.1)		Potri.017G141950 [exp]	11.18	0.9467
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Potri.011G062600 [exp]	11.53	0.9460
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Potri.016G126900 [exp]	13.63	0.9466
AT4G37340		CYP81D3	"cytochrome P450, family 81, s...		Potri.002G121200 [exp]	14.07	0.9368	Pt-IFS1.43

Compare expression of checked genes

Potri.015G040600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.