Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18100 628 / 0 MYB ATMYB4R1 myb domain protein 4r1 (.1.2.3) AT3G09370 136 / 2e-33 MYB ATMYB3R-3, ATMYB3R3 myb domain protein 3R3, myb domain protein 3r-3 (.1.2) AT5G11510 134 / 1e-31 MYB ATMYB3R-4, AtMYB3R4 myb domain protein 3R4, myb domain protein 3r-4 (.1.2) AT5G02320 127 / 4e-30 MYB MYB3R-5, ATMYB3R5 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3R5, myb domain protein 3r-5 (.1.2) AT4G32730 126 / 3e-29 MYB ATMYB3R-1, PC-MYB1, ATMYB3R1 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2) AT4G00540 103 / 5e-23 MYB MYB3R-2, PC-MYB2, ATMYB3R2 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-2, myb domain protein 3r2 (.1.2) AT3G27785 97 / 9e-21 MYB PGA37, ATMYB118 PLANT GROWTH ACTIVATOR 37, myb domain protein 118 (.1) AT4G18770 93 / 1e-19 MYB ATMYB98 myb domain protein 98 (.1) AT1G69560 91 / 3e-19 MYB LOF2, ATMYB105 LATERAL ORGAN FUSION 2, myb domain protein 105 (.1) AT1G17950 89 / 4e-19 MYB AtMYB52, BW52, MYB52 myb domain protein 52 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G085600 [exp] 132 / 1e-31 AT5G02320 477 / 9e-164 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3R5, myb domain protein 3r-5 (.1.2) Potri.006G241700 [exp] 132 / 7e-31 AT5G11510 696 / 0.0 myb domain protein 3R4, myb domain protein 3r-4 (.1.2) Potri.003G123800 [exp] 125 / 6e-30 AT3G09370 231 / 3e-70 myb domain protein 3R3, myb domain protein 3r-3 (.1.2) Potri.018G038000 [exp] 127 / 2e-29 AT4G32730 748 / 0.0 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2) Potri.014G079300 [exp] 111 / 6e-25 AT4G32730 266 / 5e-80 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2) Potri.001G347200 [exp] 97 / 1e-20 AT3G27785 223 / 8e-68 PLANT GROWTH ACTIVATOR 37, myb domain protein 118 (.1) Potri.005G118500 [exp] 92 / 3e-19 AT4G18770 234 / 2e-72 myb domain protein 98 (.1) Potri.008G088000 [exp] 92 / 5e-19 AT1G69560 229 / 2e-71 LATERAL ORGAN FUSION 2, myb domain protein 105 (.1) Potri.009G044100 [exp] 91 / 9e-19 AT5G58850 224 / 5e-68 myb domain protein 119 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009636 [exp] 601 / 0 AT3G18100 491 / 4e-160 myb domain protein 4r1 (.1.2.3) Lus10009008 [exp] 489 / 1e-155 AT3G18100 444 / 6e-143 myb domain protein 4r1 (.1.2.3) Lus10011687 [exp] 134 / 2e-31 AT4G32730 502 / 3e-158 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2) Lus10022136 [exp] 130 / 3e-30 AT4G32730 682 / 0.0 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2) Lus10025351 [exp] 126 / 7e-30 AT3G09370 456 / 8e-157 myb domain protein 3R3, myb domain protein 3r-3 (.1.2) Lus10024394 [exp] 125 / 1e-29 AT3G09370 456 / 8e-157 myb domain protein 3R3, myb domain protein 3r-3 (.1.2) Lus10008010 [exp] 122 / 7e-29 AT5G02320 237 / 3e-72 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3R5, myb domain protein 3r-5 (.1.2) Lus10038623 [exp] 113 / 5e-25 AT4G32730 376 / 3e-118 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2) Lus10002384 [exp] 99 / 2e-21 AT4G18770 250 / 7e-79 myb domain protein 98 (.1) Lus10042111 [exp] 99 / 2e-21 AT4G18770 249 / 8e-79 myb domain protein 98 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain CL0123 [poplar] [flax] HTH PF13921 [poplar] [flax] Myb_DNA-bind_6 Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.015G041500.4 pacid=42774861 polypeptide=Potri.015G041500.4.p locus=Potri.015G041500 ID=Potri.015G041500.4.v4.1 annot-version=v4.1 ATGAAGGCTTTTTCCCTCGAATCTCCACCACAATTCTTCTCCTTAAACCCTAAGAAATTCCTTCATACGCCATCGTGTGATCACACAATGTCTCGTTTCC GACGCCCAAATGACGACGATGAGGAGGAGGAAGAAGATGACGACGACGACTTCCAAAACGACATGGAGGCTCTCAGGCAAGCTTGCTTACTAACTGGCAC TAACCTCACCAATATCTCTCCTTCCGCCGCTGTCTCCGACGGAAGCGGTGAAGCAGATGGAAATTCCTGTGGTGGCGCCTCCGTTTCGGATTCGGGGAGC GAGGATGACTTTGAATTGTTTCGGAGCGTCCAGAATCGGTTTGCGACATCGGCGAATTCACTCGAGCCGTTATCTTTAAAACCTCTTTGTGCGCTTCCGC CGGTTTCAGATGACGAGGAGGATGATTTCGAAACACTCTGTGCTGTTAAACGCCGTTTTGCCGCCTATGATAACAATAACAATCAAGAAAAATTGAAAAC TGAAATGGAGAAATCTGAGGTTGGAGTTTCGGATAATTCATTAGCTGAAAGAAATACTGCTTGTGAAGTGTTACCTGTTACTGAACAAGATGATAATGCT GCGAATTTGCTTGGTGATAATGTGGAGATAGGGAATTCTGCTTCTGCTGAGGAGAATGAATTGGATAGTGGTAGATTATCTACGTTGGAGTTGGACTACT CTAGTTTTCCGAAGTCGGCTCAGGTGTTTATTGATGCAATTAAGAGGAATAGGTCGTGTCAGAAGTTTATTCAAAATAAGTTAATTCAGATTGAAGCAAG AATTGAGGAGAATAATAAATTGAAGGACAAGGTGAAAATTTTGAAAGATTTTCAGTTTTCGTGTAGAAAAATTACGGGAATGGCGTTGTCCTTGAGGAAG GATCCACGGATCCAATTAGTGTCAGCACGAAAGACATCAAATTCTAAGCATCCGAAGGTTAATGGTAAAAAGGTCTCTCCTTTGCAAGATGGGCCAGTGG AGAACTCGCATGTTGCTAATTATAGAACAGCATTGACTAATTTTCCACTCTCACTGAATCGTAAAAAGTGGACAGAGACAGAGAAGGAAAATCTTGGAAA GGGAATAAGACAACAATTCCAAGAAATAATGCTTCAGTTTTCCATGGATCAATTCAGTAGTTCAGAAGGATCTCCTGAAGATGGAAAAAATTTGGATAGC ATTCTAGTATCAATCAGAGATCTTGAAATTACCCCAGAAAAGATTAGAGAGTTTCTTCCAAGGGTTAATTGGGATCAGTTGGCTTCCTCGTATGTTGCAG GTCGCTCTGGTGCAGAGTGTGAAGCACGGTGGCTGAATTTCGAAGATCTGTTGATAAATCAAAGTCCATGGACCATCAAAGAGGATAAGAATCTCTTGTT AAATGTCCAGGAGAAGGGGGTCACTAACTGGTTTGATATTGCAGTATCATTGGGAACGAATAGGACTCCATCTCAGTGTCTATCTCGCTTCCAGAGGAGT TTAAATGCGCGCATATTGAAGAGGGAGTGGACCAAGGAGGAGGATGCTCAACTTCGCATTGCTGTAGAAACTTATGGTGAAAGAGATTGGCAGTCTGTGG CTTGTACTTTGGAAGGACGAGCTGGTACTCAATGCTCTAACAGATGGAAGAAAACCCTTCATCCTGCCATACGAAGGGTTGGGAGGTGGACTCTGGATGA AGACAAACGCCTGAAAGTAGCTGTAAAGCTTTTTGGTCCAAAGAAATGGGACAAAATAGCTCAATTTGTGCCAGGTAGAACTCAAGTGCAGTGTAGAGAA AGATGGGTTAATTGTTTAGATCCTTCTATGAATCGGGATGAATGGACTGAAGAAGAGGATTTGAGGTTAAAAGCAGCAATTGAAGAATGTGGATATTGCT GGTCTAAGGTTGCTGAACGTCTCCCACAAAGAACTGATAATCAGTGTTTGAGGAGATGGAAGGTGTTGGTTCCACATGAAGTGCCTTTGTTACAGGCGGC TAGGAGGATGCAGAAAGCTGCTCTTATAAGCAACTTTGTAGATCGTGAGTCAGAGCGGCCAGCACTTGGCCCAAATGATTTTGTTCCACTGGCAATTACG GGACCAGTATCTGATCCTGAAAAGATGGATCAATCTAGGAAACGTAAGAGAAAGTTAAGGAGGGAAGAATCTCAGATGGAAAAAGTTGCTGCACCTGGTA ATGCTTCAAAGAAGATTAGATCAAACAGGAGTAGGAAAAAGGTGCAAATTTCTTCCAAGGAAGTGCCAGAGATACCTGATGGCACTCAGGTTGGCAACTT AGGTGGAAGTCGTTCTGTTGTGACTGAGACAACAATGGAATACTGTTCAGAAAATAACAGACATGCTGAACGAGGTCAAGATCATCCATCATCTAATTCT AATTTGACACCATTAATGACAACCAGCTTTCAAGGGGTTGATTCCGGTCAGAACCAGCAGCTTCCTGACTTGCATCCTAAGGGACGTAAGCCTGTGGACA GAGATGGAAACAGCAAGAGTCTTCTCCTGTCACCCCCTGAAAACTTGGATGCTGGAATAATAAATGGTGACGTTTCTCAGACCTTTCACCCGAACAGTAC CACATCAAGTAAGAAAAGAAGAGCTCATAAGCAGCATTCTAGGAAGAACATATGTGCTAAATCAAGTGAAGGGAGTTCTGTGTTATCAGAAACTACTATT GATGCTAGTGCGTTGGTTAATGATTATCTGGATTCAAATTTAGTGACAACCAATGAAGAGGACAACATACTTGGTCAGCGTGATGCTCCTGGCAAGAAGA GGGTACCCAAACTACATTCAGAGAGTTCAGAATGGACAGGTAGCCTTGACTGTCTGCTGCCGCCCCATGAGAATTCAGAATTAAGAGTAACTAGTACTGA AATCATGAACAAATCCTCTTTATTTGGGACCCCTACAAATGAGAAGAGGAAGGCTTTTAAGCTTCCATGCAGGAGGAAAATAAGAAATGAAGAACCATCA AGGAAAGACCAATGTTTTGCTGCTGTTCCTTGTCAGCAGGATACCAGCAAAAAATCAAAAGCCAGAGGCAAATCTTGTTCTAAGAAGGTTTTAGAAACGA AAAATGAAGATGACGTTGTGCTTGCCTCCTTCCTTAGGGATAAATCAAAGAAGAAAAGACTTAAAGTTGCACAAAATGCTGATCAGGCTTGCTCATCCTC CAGTATGATAACGAGGCCTGAGGTGCTCTCCAGAGTAGATCAACCTAGCAATGGTAATAAATTGTCCTCTGCTGTGCGCAATAGTGAAGGACAGACATGC TCCCATGGCAGAAGTTCAGAGAACGGTTTATCATGTGATATGTACGCACATCAATCAAATCATATGCAGACAGAGCGCTGTGAGTTAGATGTGAACAATC GTGGCATATTCGCTCCCATGGAAGGAGTGAGAGAACCAGGAAGCATCGACCAGGAAGCTGTTCTTGAGCCCGGTGACATTTCTCCTGCTGGAAGTGGTTC TAGGGTTAACACCCACTCCCATTCAAGAAAGGGGCCGCAGCTGCATTCCAAAGGGGCAGAACAACCGCGCAATGATACAGGTCCAGACAAGTTGTCATGT TCTGTAAAGAACTCAATTGGATCAAGTAGCAAGCCAACTATCATAGGCAATGACATTGAGCCAGGTGGACGGTCCAGCCACTCTCCATCAGCCAGTGGGG AAGCCTTAAAGTACTATAAAAGACGTTCAAAACGCTGA
AA sequence Show only first row Show all	>Potri.015G041500.4 pacid=42774861 polypeptide=Potri.015G041500.4.p locus=Potri.015G041500 ID=Potri.015G041500.4.v4.1 annot-version=v4.1 MKAFSLESPPQFFSLNPKKFLHTPSCDHTMSRFRRPNDDDEEEEEDDDDDFQNDMEALRQACLLTGTNLTNISPSAAVSDGSGEADGNSCGGASVSDSGS EDDFELFRSVQNRFATSANSLEPLSLKPLCALPPVSDDEEDDFETLCAVKRRFAAYDNNNNQEKLKTEMEKSEVGVSDNSLAERNTACEVLPVTEQDDNA ANLLGDNVEIGNSASAEENELDSGRLSTLELDYSSFPKSAQVFIDAIKRNRSCQKFIQNKLIQIEARIEENNKLKDKVKILKDFQFSCRKITGMALSLRK DPRIQLVSARKTSNSKHPKVNGKKVSPLQDGPVENSHVANYRTALTNFPLSLNRKKWTETEKENLGKGIRQQFQEIMLQFSMDQFSSSEGSPEDGKNLDS ILVSIRDLEITPEKIREFLPRVNWDQLASSYVAGRSGAECEARWLNFEDLLINQSPWTIKEDKNLLLNVQEKGVTNWFDIAVSLGTNRTPSQCLSRFQRS LNARILKREWTKEEDAQLRIAVETYGERDWQSVACTLEGRAGTQCSNRWKKTLHPAIRRVGRWTLDEDKRLKVAVKLFGPKKWDKIAQFVPGRTQVQCRE RWVNCLDPSMNRDEWTEEEDLRLKAAIEECGYCWSKVAERLPQRTDNQCLRRWKVLVPHEVPLLQAARRMQKAALISNFVDRESERPALGPNDFVPLAIT GPVSDPEKMDQSRKRKRKLRREESQMEKVAAPGNASKKIRSNRSRKKVQISSKEVPEIPDGTQVGNLGGSRSVVTETTMEYCSENNRHAERGQDHPSSNS NLTPLMTTSFQGVDSGQNQQLPDLHPKGRKPVDRDGNSKSLLLSPPENLDAGIINGDVSQTFHPNSTTSSKKRRAHKQHSRKNICAKSSEGSSVLSETTI DASALVNDYLDSNLVTTNEEDNILGQRDAPGKKRVPKLHSESSEWTGSLDCLLPPHENSELRVTSTEIMNKSSLFGTPTNEKRKAFKLPCRRKIRNEEPS RKDQCFAAVPCQQDTSKKSKARGKSCSKKVLETKNEDDVVLASFLRDKSKKKRLKVAQNADQACSSSSMITRPEVLSRVDQPSNGNKLSSAVRNSEGQTC SHGRSSENGLSCDMYAHQSNHMQTERCELDVNNRGIFAPMEGVREPGSIDQEAVLEPGDISPAGSGSRVNTHSHSRKGPQLHSKGAEQPRNDTGPDKLSC SVKNSIGSSSKPTIIGNDIEPGGRSSHSPSASGEALKYYKRRSKR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G18100	MYB	ATMYB4R1	myb domain protein 4r1 (.1.2.3...		Potri.015G041500 [exp]	0	1
AT5G04895			DEA(D/H)-box RNA helicase fami...		Potri.008G014100 [exp]	1.41	0.9047
AT5G03910		ABCB29, ATATH12	ARABIDOPSIS THALIANA ABC TRANS...		Potri.006G211700 [exp]	3.00	0.8425
AT5G16680			RING/FYVE/PHD zinc finger supe...		Potri.013G077900 [exp]	3.16	0.8800
AT3G19510	HD	HAT3.1	Homeodomain-like protein with ...		Potri.009G093000 [exp]	4.00	0.8276
AT3G63070			Tudor/PWWP/MBT domain-containi...		Potri.014G138700 [exp]	10.00	0.8378
AT5G65560			Pentatricopeptide repeat (PPR)...		Potri.006G124900 [exp]	12.64	0.8362
AT5G04810			pentatricopeptide (PPR) repeat...		Potri.010G241300 [exp]	13.74	0.8055
AT5G01400		ESP4	ENHANCED SILENCING PHENOTYPE 4...		Potri.016G116600 [exp]	13.85	0.8358
AT2G30780			Tetratricopeptide repeat (TPR)...		Potri.016G119600 [exp]	15.19	0.7987
					Potri.001G247100 [exp]	18.38	0.8026

Compare expression of checked genes

Potri.015G041500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.