Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49120 61 / 3e-10 AP2_ERF CRF9 cytokinin response factor 9, Integrase-type DNA-binding superfamily protein (.1) AT3G61630 60 / 6e-10 AP2_ERF CRF6 cytokinin response factor 6 (.1) AT1G68550 59 / 8e-10 AP2_ERF CRF10 cytokinin response factor 10, Integrase-type DNA-binding superfamily protein (.1.2) AT4G23750 59 / 1e-09 AP2_ERF TMO3, CRF2 TARGET OF MONOPTEROS 3, cytokinin response factor 2 (.1.2) AT1G28370 56 / 2e-09 AP2_ERF AtERF11 ERF domain protein 11 (.1) AT1G28360 56 / 3e-09 AP2_ERF AtERF12 ERF domain protein 12 (.1) AT1G72360 56 / 3e-09 AP2_ERF AtERF73, HRE1 HYPOXIA RESPONSIVE ERF \(ETHYLENE RESPONSE FACTOR\) 1, ethylene response factor 73, Integrase-type DNA-binding superfamily protein (.1.2.3) AT1G03800 57 / 4e-09 AP2_ERF AtERF10 ARABIDOPSIS THALIANA RF DOMAIN PROTEIN 10, ERF domain protein 10 (.1) AT4G27950 57 / 5e-09 AP2_ERF CRF4 cytokinin response factor 4 (.1) AT1G53170 55 / 8e-09 AP2_ERF ATERF8, ATERF-8 ETHYLENE RESPONSE ELEMENT BINDING FACTOR 4, ethylene response factor 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G125600 [exp] 67 / 3e-12 AT3G25890 95 / 6e-22 cytokinin response factor 11, Integrase-type DNA-binding superfamily protein (.1.2) Potri.008G120100 [exp] 64 / 3e-11 AT3G25890 124 / 4e-33 cytokinin response factor 11, Integrase-type DNA-binding superfamily protein (.1.2) Potri.011G056900 [exp] 56 / 3e-09 AT1G28360 149 / 6e-46 ERF domain protein 12 (.1) Potri.019G088000 [exp] 55 / 3e-09 AT1G12890 104 / 1e-28 Integrase-type DNA-binding superfamily protein (.1) Potri.004G047500 [exp] 56 / 4e-09 AT1G28360 157 / 3e-49 ERF domain protein 12 (.1) Potri.019G131300 [exp] 57 / 6e-09 AT4G27950 139 / 2e-38 cytokinin response factor 4 (.1) Potri.001G397200 [exp] 55 / 9e-09 AT3G15210 95 / 1e-23 RELATED TO AP2 5, ethylene responsive element binding factor 4 (.1) Potri.012G032900 [exp] 55 / 2e-08 AT4G27950 214 / 6e-67 cytokinin response factor 4 (.1) Potri.001G094800 [exp] 55 / 2e-08 AT4G23750 177 / 2e-52 TARGET OF MONOPTEROS 3, cytokinin response factor 2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035018 [exp] 70 / 2e-13 AT3G25890 150 / 2e-42 cytokinin response factor 11, Integrase-type DNA-binding superfamily protein (.1.2) Lus10021678 [exp] 66 / 1e-11 AT3G25890 154 / 4e-44 cytokinin response factor 11, Integrase-type DNA-binding superfamily protein (.1.2) Lus10027573 [exp] 64 / 3e-11 AT4G27950 209 / 1e-64 cytokinin response factor 4 (.1) Lus10039324 [exp] 63 / 6e-11 AT4G27950 210 / 8e-65 cytokinin response factor 4 (.1) Lus10017550 [exp] 59 / 2e-09 AT4G23750 172 / 2e-51 TARGET OF MONOPTEROS 3, cytokinin response factor 2 (.1.2) Lus10034316 [exp] 57 / 6e-09 AT1G68550 151 / 2e-43 cytokinin response factor 10, Integrase-type DNA-binding superfamily protein (.1.2) Lus10041456 [exp] 57 / 7e-09 AT1G68550 146 / 3e-41 cytokinin response factor 10, Integrase-type DNA-binding superfamily protein (.1.2) Lus10016225 [exp] 55 / 9e-09 AT2G44840 154 / 4e-47 ethylene-responsive element binding factor 13 (.1) Lus10031526 [exp] 55 / 2e-08 AT1G50640 112 / 2e-30 ethylene responsive element binding factor 3 (.1) Lus10017907 [exp] 55 / 2e-08 AT1G24590 134 / 1e-37 FOR SUPPRESSOR OF PHYTOCHROMEB-4 2, ENHANCER OF SHOOT REGENERATION 2, DORNROSCHEN-like (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [poplar] [flax] MBD-like PF00847 [poplar] [flax] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Potri.015G054500.1 pacid=42776114 polypeptide=Potri.015G054500.1.p locus=Potri.015G054500 ID=Potri.015G054500.1.v4.1 annot-version=v4.1 ATGCCAGGCCTTCAAAGGCCAATTTTGGATCAAGATAGGATTTTTGATCAAGAGAAGCAAAAGAAACCAGCCATGGAAAGCAACATGAAAGCTTCTAGGA AAGTTCGAATAATATGTCATGATCCTGAGGCCACAGACTCTTCAAGTGATGAAGATGAAGAATACTTTGATCGGTGTAATCGTTGGAAGCAATTCATTAG GGAGATCACCCTCCCAGTTTTCCCATCCAAGTCCATTCTTGAGGGTCCTTCACAAGACAAAACTGGTGTATGCAAAAGCAATATTATCATTTCTAATTCT CTTGATAATATTAGACCTCGGAGATCATCAGCAATCTATAAAGGTGTTCGAAGAAGACCATGGGGGAAATATTCAGCCGAGATTAGGGATCCATTTCTAA AGATTCGTTTATGGCTCGGGACTTATACGACTGCGGAAGAAGCTGCTGCTGCTTATAAGAAAAAGAAGGAAGAGTTCGACAGCAAAATGGCATTGGAGAG AGCTAATAATTTGCATGTTGATACAAAGGTAGTATCTGAAGAATTCGATGGCTTATGTTCTCATCCGTCTCCATTGTCTGTGCTTGATGTCTCTACCATG ACCTCACTTGGTCATGGGCTTGAAAGCAATGTGGAAATGGTGGCCAAAGAGTGTAATATGGAAAGTTCAATCAAAGAAGAAAGCTGTGTAGAAATGATTG AAGACGGCTCCGAAGAAGTGCAATGCATTTCGGATTTATGGGAAGAGCGAACGTTATCACCATCAGTTAGTCAAGAGTTGCTTGGTTTTGATCAACAGTC TCAATTTGGGCAGTTTTTTGATGGTTTCATTAATGGAGAAGGTTTTTCTATGTGCGATAACACTGAGCCAGTCAGTTCTCCTATGGATGGGGTGATGGAT CTTCCGGACATTGAACTTGAGACGCTTGCTTTTGTTGAGGAAACTCTCAATTTTGCTCACCAATAA
AA sequence Show only first row Show all	>Potri.015G054500.1 pacid=42776114 polypeptide=Potri.015G054500.1.p locus=Potri.015G054500 ID=Potri.015G054500.1.v4.1 annot-version=v4.1 MPGLQRPILDQDRIFDQEKQKKPAMESNMKASRKVRIICHDPEATDSSSDEDEEYFDRCNRWKQFIREITLPVFPSKSILEGPSQDKTGVCKSNIIISNS LDNIRPRRSSAIYKGVRRRPWGKYSAEIRDPFLKIRLWLGTYTTAEEAAAAYKKKKEEFDSKMALERANNLHVDTKVVSEEFDGLCSHPSPLSVLDVSTM TSLGHGLESNVEMVAKECNMESSIKEESCVEMIEDGSEEVQCISDLWEERTLSPSVSQELLGFDQQSQFGQFFDGFINGEGFSMCDNTEPVSSPMDGVMD LPDIELETLAFVEETLNFAHQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G49120	AP2_ERF	CRF9	cytokinin response factor 9, I...		Potri.015G054500 [exp]	0	1
AT4G34590	bZIP	ATB2, ATBZIP11,...	Arabidopsis thaliana basic leu...		Potri.009G119700 [exp]	6.70	0.6899	Pt-GBF6.1
					Potri.008G125350 [exp]	8.77	0.7760
AT4G04630			Protein of unknown function, D...		Potri.004G014000 [exp]	17.74	0.7426
AT5G24630		MID, BIN4	MIDGET, brassinosteroid-insens...		Potri.015G000701 [exp]	18.52	0.7372
AT1G61065			Protein of unknown function (D...		Potri.004G038700 [exp]	20.39	0.7186
AT2G23620		ATMES1	ARABIDOPSIS THALIANA METHYL ES...		Potri.005G133600 [exp]	21.90	0.7403
AT2G32150			Haloacid dehalogenase-like hyd...		Potri.008G151700 [exp]	24.39	0.7390	NOD33.2
AT5G21990		OEP61, TPR7	tetratricopeptide repeat 7, ou...		Potri.004G190600 [exp]	25.09	0.6361
AT2G23620		ATMES1	ARABIDOPSIS THALIANA METHYL ES...		Potri.005G133700 [exp]	26.03	0.7378
AT5G40990		GLIP1	GDSL lipase 1 (.1)		Potri.017G137000 [exp]	26.45	0.7204

Compare expression of checked genes

Potri.015G054500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.