Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40010 538 / 0 ASD, AATP1 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) AT3G28580 513 / 1e-179 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28510 507 / 1e-176 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28540 474 / 4e-164 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G28600 465 / 4e-161 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28610 457 / 7e-158 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G40000 444 / 1e-152 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28520 410 / 1e-139 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28570 401 / 3e-136 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G25835 356 / 7e-118 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G020800 [exp] 572 / 0 AT5G40010 526 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.004G091500 [exp] 570 / 0 AT5G40010 582 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.019G020700 [exp] 565 / 0 AT5G40010 531 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.013G047950 [exp] 563 / 0 AT5G40010 538 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.013G047900 [exp] 556 / 0 AT5G40010 537 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.004G012500 [exp] 548 / 0 AT5G40010 556 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.004G012700 [exp] 543 / 0 AT5G40010 566 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.004G012601 [exp] 543 / 0 AT5G40010 566 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.004G091300 [exp] 399 / 5e-137 AT5G40010 441 / 2e-153 ATPase-in-Seed-Development, AAA-ATPase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042166 [exp] 628 / 0 AT5G40010 526 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10004258 [exp] 619 / 0 AT3G28580 507 / 1e-176 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10014496 [exp] 570 / 0 AT5G40010 577 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10015354 [exp] 548 / 0 AT5G40010 598 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10014498 [exp] 543 / 0 AT5G40010 598 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10015349 [exp] 500 / 1e-174 AT5G40010 536 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10014497 [exp] 477 / 3e-165 AT3G28580 463 / 7e-160 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10032188 [exp] 473 / 5e-164 AT5G40010 497 / 4e-173 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10030667 [exp] 442 / 9e-152 AT5G40010 501 / 2e-174 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10005256 [exp] 444 / 4e-150 AT5G40010 501 / 4e-172 ATPase-in-Seed-Development, AAA-ATPase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00004 [poplar] [flax] AAA ATPase family associated with various cellular activities (AAA) CL0023 [poplar] [flax] PF14363 [poplar] [flax] AAA_assoc Domain associated at C-terminal with AAA
Representative CDS sequence Show only first row Show all	>Potri.015G067400.1 pacid=42775119 polypeptide=Potri.015G067400.1.p locus=Potri.015G067400 ID=Potri.015G067400.1.v4.1 annot-version=v4.1 ATGATTGTACCTCAAACAATGACCGAGATGTGGGCAACAATGGGTTCAACCATTGCCAGTTTCATGTTCATTTCGGCTATTATTCACCAATACTGCCCCT ACGAGGTTCGTCTCTACTTTGGCAAGTATACACAAAGAATCATGAGCTTTTTCTATCCTTACATTAAGATATCAATCCACGAGTACGCTGGAGATCGCCT CAAGAGAAGTGAAGCCTATGCTGCTGTTGAGGCATATCTTAGCATCAACTCATCCAAGTGTGCTAAGAGACTTAAGGCGGAGATGGCAAAGGATTGCAGC AACTTGGTGCTTAGTATGGATGAGTATGAGAGAGTGAAAGATGAATTTCAGGGTATCCAAGTTTGGTGGGTTTCAAGCAAAGTGATGCCACCATTACAAT CCATGTATCCTCAGCAAGAGAGAAGGTATTATAGGCTCACGTTTCATAAGCGCTACAGGGGGGTCATAAGTGAGGTTTACTTGAAGCATGTGATGCAGCA AGGGAAAGAAATTAGGGTGAGAAACAGACAGAGGAAGCTTTACACAAATGGTTCTGGAAACAAGTGGCAAATCTACAAGCAGACCATGTGGAACCATATA GTGTTCGAGCATCCTGCCACATTCGATACGTTAGCCATGGAGCCTGCAAAGAAGCAGGAGATCATAGAAGATCTGGTGACTTTCAGCGAGAGCAAGGATT TCTATGCCAGAATTGGAAAGGCGTGGAAACGAGGGTATCTTCTTTACGGTCCACCAGGGACCGGAAAGTCTACCATGATTGCTGCAATGGCCAACTTGTT AAACTATGATGTTTATGATCTCGAGCTCACTGCTGTGAAAGACAATAGCGAGCTAAGGACGCTTTTGATTGAGACCACTAGTAAATCTATCATAGTGATA GAAGACATAGATTGCTCGCTTGAGCTGACTGGTCAAAGGAATAAGAAAGAAGAGAAATCTCCAGATGAGGACAAGGAGAAGTCAGAGAAAGAAACTGGCA AAGAACATCATAAAGAAGAGACTAGCAGCAAAGTGACACTTTCGGGGCTGTTGAATTTCATTGATGGGATATGGTCTGCTAGTGGAGGGGAGAGGCTTAT TGTGTTTACTACTAATTACGTGGAGAAGCTTGATCCTGCTCTGGTAAGAAGGGGAAGAATGGACAAGCATATTGAGCTCTCTTACTGCAGTTTTGAGGCA TTCAAAGTGCTTTCAAGGAATTACCTGAGACTTGAAGCACATCCTTTGTTCGATAAAATTGAAAGCTTAATGAAGGAGACCAAGATCACACCAGCAGATG TCGCAGAGAGCCTCATGCCCAAGTCCCCATTGGATGATGCAGAGAAGTGTCTCTCACACTTAATTCAAGCTCTTGAGGAAGCAGAAGAAGCTACAGAAAA GGCTGACAAAGACGCATCCAGACAAAACGCTCAAGCAGCTACTAAGGCAGCAGAGGGCCGTGCCAAGGAAGACGCTGCCCAACCACAAGAAAATAGTCAC TGA
AA sequence Show only first row Show all	>Potri.015G067400.1 pacid=42775119 polypeptide=Potri.015G067400.1.p locus=Potri.015G067400 ID=Potri.015G067400.1.v4.1 annot-version=v4.1 MIVPQTMTEMWATMGSTIASFMFISAIIHQYCPYEVRLYFGKYTQRIMSFFYPYIKISIHEYAGDRLKRSEAYAAVEAYLSINSSKCAKRLKAEMAKDCS NLVLSMDEYERVKDEFQGIQVWWVSSKVMPPLQSMYPQQERRYYRLTFHKRYRGVISEVYLKHVMQQGKEIRVRNRQRKLYTNGSGNKWQIYKQTMWNHI VFEHPATFDTLAMEPAKKQEIIEDLVTFSESKDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAVKDNSELRTLLIETTSKSIIVI EDIDCSLELTGQRNKKEEKSPDEDKEKSEKETGKEHHKEETSSKVTLSGLLNFIDGIWSASGGERLIVFTTNYVEKLDPALVRRGRMDKHIELSYCSFEA FKVLSRNYLRLEAHPLFDKIESLMKETKITPADVAESLMPKSPLDDAEKCLSHLIQALEEAEEATEKADKDASRQNAQAATKAAEGRAKEDAAQPQENSH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Potri.015G067400 [exp]	0	1
					Potri.013G101801 [exp]	3.00	0.7748
AT5G35110			unknown protein		Potri.018G113700 [exp]	3.46	0.7606
					Potri.019G056601 [exp]	6.92	0.7532
AT3G06520			agenet domain-containing prote...		Potri.010G149301 [exp]	11.95	0.6898
AT5G35550	MYB	ATTT2, TT2, AtM...	TRANSPARENT TESTA 2, MYB DOMAI...		Potri.006G221500 [exp]	13.19	0.7541	MYB183
AT2G37870			Bifunctional inhibitor/lipid-t...		Potri.010G100600 [exp]	18.97	0.6854
AT1G63440		HMA5	heavy metal atpase 5 (.1)		Potri.003G204801 [exp]	20.37	0.7447
AT3G22060			Receptor-like protein kinase-r...		Potri.007G120401 [exp]	21.84	0.6125
AT5G59970			Histone superfamily protein (....		Potri.010G213900 [exp]	21.90	0.6447	HFO913
AT1G02460			Pectin lyase-like superfamily ...		Potri.005G005500 [exp]	23.62	0.7184

Compare expression of checked genes

Potri.015G067400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.