Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G28470 222 / 6e-70 MYB TDF1, ATMYB35 DEFECTIVE IN MERISTEM DEVELOPMENT AND FUNCTION 1, MYB DOMAIN PROTEIN 35, Duplicated homeodomain-like superfamily protein (.1) AT5G56110 208 / 2e-64 MYB MS188, ATMYB80, AtMYB103 MALE STERILE 188, ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 80, myb domain protein 103 (.1) AT4G21440 193 / 3e-58 MYB ATMYB102, ATM4 A. THALIANA MYB 4, MYB-like 102 (.1) AT5G16770 190 / 3e-57 MYB ATMYB9 myb domain protein 9 (.1.2) AT3G02940 189 / 6e-57 MYB ATMYB107 myb domain protein 107 (.1) AT5G15310 187 / 3e-56 MYB ATMYB16, ATMIXTA myb domain protein 16 (.1.2) AT1G09540 187 / 6e-56 MYB AtMYB61 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 61, myb domain protein 61 (.1) AT3G01140 186 / 6e-55 MYB NOK, ATMYB106 NOECK, myb domain protein 106 (.1) AT4G28110 181 / 1e-54 MYB ATMYB41 myb domain protein 41 (.1) AT1G57560 182 / 2e-54 MYB ATMYB50 myb domain protein 50 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G072500 [exp] 565 / 0 AT3G28470 228 / 3e-72 DEFECTIVE IN MERISTEM DEVELOPMENT AND FUNCTION 1, MYB DOMAIN PROTEIN 35, Duplicated homeodomain-like superfamily protein (.1) Potri.017G075000 [exp] 254 / 2e-81 AT3G28470 254 / 2e-82 DEFECTIVE IN MERISTEM DEVELOPMENT AND FUNCTION 1, MYB DOMAIN PROTEIN 35, Duplicated homeodomain-like superfamily protein (.1) Potri.011G167600 [exp] 208 / 3e-64 AT5G56110 338 / 3e-116 MALE STERILE 188, ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 80, myb domain protein 103 (.1) Potri.001G470500 [exp] 206 / 2e-63 AT5G56110 334 / 2e-114 MALE STERILE 188, ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 80, myb domain protein 103 (.1) Potri.010G165700 [exp] 191 / 4e-57 AT3G01140 302 / 3e-100 NOECK, myb domain protein 106 (.1) Potri.014G111200 [exp] 191 / 3e-56 AT4G01680 282 / 3e-93 myb domain protein 55 (.1.2.3) Potri.011G041600 [exp] 189 / 3e-56 AT4G21440 311 / 2e-104 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.004G033100 [exp] 188 / 6e-56 AT4G21440 293 / 4e-97 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.017G086300 [exp] 188 / 6e-56 AT5G15310 343 / 6e-117 myb domain protein 16 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036660 [exp] 328 / 2e-110 AT3G28470 213 / 2e-66 DEFECTIVE IN MERISTEM DEVELOPMENT AND FUNCTION 1, MYB DOMAIN PROTEIN 35, Duplicated homeodomain-like superfamily protein (.1) Lus10033119 [exp] 302 / 2e-100 AT3G28470 214 / 3e-67 DEFECTIVE IN MERISTEM DEVELOPMENT AND FUNCTION 1, MYB DOMAIN PROTEIN 35, Duplicated homeodomain-like superfamily protein (.1) Lus10005834 [exp] 250 / 1e-80 AT3G28470 283 / 2e-94 DEFECTIVE IN MERISTEM DEVELOPMENT AND FUNCTION 1, MYB DOMAIN PROTEIN 35, Duplicated homeodomain-like superfamily protein (.1) Lus10039462 [exp] 249 / 2e-80 AT3G28470 284 / 9e-95 DEFECTIVE IN MERISTEM DEVELOPMENT AND FUNCTION 1, MYB DOMAIN PROTEIN 35, Duplicated homeodomain-like superfamily protein (.1) Lus10033003 [exp] 191 / 4e-57 AT5G15310 323 / 2e-109 myb domain protein 16 (.1.2) Lus10026620 [exp] 186 / 3e-56 AT3G01140 294 / 2e-98 NOECK, myb domain protein 106 (.1) Lus10018418 [exp] 186 / 1e-55 AT4G21440 334 / 5e-114 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10038022 [exp] 187 / 5e-55 AT4G01680 273 / 8e-90 myb domain protein 55 (.1.2.3) Lus10002593 [exp] 184 / 8e-55 AT4G21440 330 / 2e-112 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10014784 [exp] 179 / 1e-53 AT3G61250 342 / 1e-118 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.015G067700.1 pacid=42775011 polypeptide=Potri.015G067700.1.p locus=Potri.015G067700 ID=Potri.015G067700.1.v4.1 annot-version=v4.1 ATGGTGAGACCTCCTTGCTGTGGCAAGTTCAATGTGAAAAGGGGTCTATGGACTGCAGATGAAGATGCAAAGATACTTGCTCATGTGGCCAAGCATGGAA CAGGAAATTGGACTGCTGTTCCAAAGAAAGCAGGACTTCAAAGATGTGGGAAGAGTTGCAGACTTAGGTGGACTAATTACCTGAGCCCTGATCTCAAGCA TGACAACTTCACACCCCAAGAAGAGGAAATGATTATTAGGCTACATGCAGCCATAGGTAGCAGGTGGTCTATCATCGCCCAACAACTTCCAGGAAGAACA GACAATGATGTGAAAAACTGCTGGAACGCCAGGCTAAGAAAGAAGCTCTCTGAAATGGGGATAGATCCTGTTACTCACAAGCCATTCTCTAAAATTTTAG CTGACTATGGAAACATTGGTGGCCTTGTAAAATCTGGAAGCAGAATTGGGTCACTCAGCAGAGACCTAAAAAATGTTTTCGCTTTGAAACCAGAGCAATA TAATTCAATCCTGCCTGAAGGAATCTCGAACATCAACAGCCATTTGATGACCAGAATGGTACCCCGTAAGATGGAACCAGTTCAAGAATGTTTCTTGAAC AAGTTTAACAATGACAGCACTAATAGCAATCACTCACTGGATCTTCTTGATCAGCTTCAAGCCATAAAACTGGTGACGGAGGCCTCTAGTACTTGCGCTG AATATCAAACTATGCTAGTACCTAATTATAATATCCTTGATGAAGGCTCATTATCATCATCTACTTGCTCCACCGAAACTCAAGAAAATTTGCCAACAAG CTTTAGATGGTGCGACTTTCTTCTGGAAGATCAATTTCTCCCCAGTGATCCACAGGCAGAACAAGAAAACGCAGCAGAACTTTCATCCAAGGACTTGACG AACCAAACACAGAATGTTATTGTGACAAGCCAAGGCCAGAATCCGAATACGATGAAACCACAATGTGATCAAATTATTGCTGAGGCTAGTGTCGGAGTCA ACGGAGTGGATTTGGCAGTCCAAAACAATAGTGGTTTCGGTGACCAAGTTGCACCATCGTCATCACAACACAGTTCATTTGTTGAAACTATCATAGATGG AGAAAACAAGATATTCTTGGATTTTCCTAACTTGCTAGAGGAACTATTCAACTACTGA
AA sequence Show only first row Show all	>Potri.015G067700.1 pacid=42775011 polypeptide=Potri.015G067700.1.p locus=Potri.015G067700 ID=Potri.015G067700.1.v4.1 annot-version=v4.1 MVRPPCCGKFNVKRGLWTADEDAKILAHVAKHGTGNWTAVPKKAGLQRCGKSCRLRWTNYLSPDLKHDNFTPQEEEMIIRLHAAIGSRWSIIAQQLPGRT DNDVKNCWNARLRKKLSEMGIDPVTHKPFSKILADYGNIGGLVKSGSRIGSLSRDLKNVFALKPEQYNSILPEGISNINSHLMTRMVPRKMEPVQECFLN KFNNDSTNSNHSLDLLDQLQAIKLVTEASSTCAEYQTMLVPNYNILDEGSLSSSTCSTETQENLPTSFRWCDFLLEDQFLPSDPQAEQENAAELSSKDLT NQTQNVIVTSQGQNPNTMKPQCDQIIAEASVGVNGVDLAVQNNSGFGDQVAPSSSQHSSFVETIIDGENKIFLDFPNLLEELFNY

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G28470	MYB	TDF1, ATMYB35	DEFECTIVE IN MERISTEM DEVELOPM...		Potri.015G067700 [exp]	0	1
AT3G27810	MYB	AtMYB3, ATMYB21	ARABIDOPSIS THALIANA MYB DOMA...		Potri.017G071500 [exp]	9.05	0.9380	MYB24.1
					Potri.006G101150 [exp]	14.28	0.9101
AT3G11840		PUB24	plant U-box 24 (.1)		Potri.009G016100 [exp]	18.97	0.9058
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.008G033500 [exp]	21.44	0.9052
AT4G16740		ATTPS03	terpene synthase 03 (.1.2)		Potri.007G118600 [exp]	24.28	0.9047
					Potri.006G038250 [exp]	27.16	0.9045
AT1G05010		ACO4, EAT1, EFE	ethylene forming enzyme, ethyl...		Potri.002G224100 [exp]	29.81	0.9030	ACO2,ACO1.1
AT1G61680		ATTPS14	terpene synthase 14 (.1.2)		Potri.004G030400 [exp]	30.85	0.9029
AT1G30135	ZIM	TIFY5A, JAZ8	jasmonate-zim-domain protein 8...		Potri.006G023301 [exp]	32.17	0.9028
AT3G07820			Pectin lyase-like superfamily ...		Potri.019G067133 [exp]	34.49	0.9026

Compare expression of checked genes

Potri.015G067700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.