Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62890 908 / 0 Xanthine/uracil permease family protein (.1.2.3.4) AT5G49990 832 / 0 Xanthine/uracil permease family protein (.1) AT1G60030 803 / 0 ATNAT7 ARABIDOPSIS NUCLEOBASE-ASCORBATE TRANSPORTER 7, nucleobase-ascorbate transporter 7 (.1) AT1G10540 731 / 0 ATNAT8 nucleobase-ascorbate transporter 8 (.1) AT1G49960 612 / 0 Xanthine/uracil permease family protein (.1) AT1G65550 591 / 0 Xanthine/uracil permease family protein (.1) AT2G34190 588 / 0 Xanthine/uracil permease family protein (.1) AT2G05760 559 / 0 Xanthine/uracil permease family protein (.1) AT2G26510 488 / 1e-168 PDE135 pigment defective embryo 135, Xanthine/uracil permease family protein (.1.2) AT5G25420 416 / 3e-142 Xanthine/uracil/vitamin C permease (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G077400 [exp] 952 / 0 AT5G62890 914 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Potri.008G146400 [exp] 847 / 0 AT1G60030 881 / 0.0 ARABIDOPSIS NUCLEOBASE-ASCORBATE TRANSPORTER 7, nucleobase-ascorbate transporter 7 (.1) Potri.010G095500 [exp] 834 / 0 AT1G60030 869 / 0.0 ARABIDOPSIS NUCLEOBASE-ASCORBATE TRANSPORTER 7, nucleobase-ascorbate transporter 7 (.1) Potri.009G086800 [exp] 650 / 0 AT1G49960 727 / 0.0 Xanthine/uracil permease family protein (.1) Potri.004G058800 [exp] 587 / 0 AT2G34190 927 / 0.0 Xanthine/uracil permease family protein (.1) Potri.011G068200 [exp] 585 / 0 AT2G34190 928 / 0.0 Xanthine/uracil permease family protein (.1) Potri.014G157800 [exp] 579 / 0 AT2G05760 930 / 0.0 Xanthine/uracil permease family protein (.1) Potri.014G015100 [exp] 570 / 0 AT1G65550 559 / 0.0 Xanthine/uracil permease family protein (.1) Potri.002G129400 [exp] 511 / 9e-178 AT2G26510 751 / 0.0 pigment defective embryo 135, Xanthine/uracil permease family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004228 [exp] 937 / 0 AT5G62890 972 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Lus10034125 [exp] 919 / 0 AT1G49960 944 / 0.0 Xanthine/uracil permease family protein (.1) Lus10042138 [exp] 902 / 0 AT5G62890 932 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Lus10043460 [exp] 868 / 0 AT5G62890 892 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Lus10010707 [exp] 847 / 0 AT5G62890 916 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Lus10029191 [exp] 844 / 0 AT5G62890 914 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Lus10033773 [exp] 600 / 0 AT1G49960 695 / 0.0 Xanthine/uracil permease family protein (.1) Lus10036355 [exp] 590 / 0 AT1G65550 748 / 0.0 Xanthine/uracil permease family protein (.1) Lus10029238 [exp] 583 / 0 AT2G34190 926 / 0.0 Xanthine/uracil permease family protein (.1) Lus10014777 [exp] 580 / 0 AT1G65550 751 / 0.0 Xanthine/uracil permease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [poplar] [flax] APC PF00860 [poplar] [flax] Xan_ur_permease Permease family
Representative CDS sequence Show only first row Show all	>Potri.015G072600.3 pacid=42776653 polypeptide=Potri.015G072600.3.p locus=Potri.015G072600 ID=Potri.015G072600.3.v4.1 annot-version=v4.1 ATGGCTGGAGGAGGAAAGGCTGAGGAGCCACAAGCACATCCACCAAGGGAGCAGCTTCCTAACATTTCTTATTGCATGACTAGTCCACCACCGTGGCCGG AAGCTATCCTACTTGGTTTCCAACATTACCTTGTGATGCTTGGAACTACTGTTCTCATTCCTTCTGCTCTCGTTCCTCAAATGGGAGGTGGAAATAAAGA GAAGGCCGATGTGATCCAGACACTTCTCTTTGTTGCTGGTTTGAACACATTGCTCCAGAGTTTGTTCGGCACTCGTTTGCCTGCTGTTATTGGAGGCTCT TACACCTTTGTCCCAACTACAATTTCAATTATCCTTTCTGGTCGATTTAGCGACGAAGTAGATCCTGTTGAGAAGTTTAAGAGGATTATGCGTGCAATAC AAGGTGCTCTCATTGTTGCTTCTACTCTTCAGATTGTTCTAGGTTTCAGTGGACTTTGGCGTAATGTCACGAGGTTTTTAAGTCCACTTTCAGCTGTTCC TTTGGTAGCTCTCGTTGGTTTTGGGCTGTATGAGCTTGGTTTTCCTGGCGTTGCCAAATGCGTGGAGATTGGCTTGCCAGAGCTTATCATCTTAGTATTT GTTTCACAGTACATGCCCCATGTGATAAAGTCAGGAAGACATATCTTTGACCGTTTTGCTGTCATATTCGCTGTGGTGATTGTATGGATTTATGCTCATC TGCTCACAGTGGGTGGTGCTTATAATGATGCAGCGCCAAGGACACAAGCAATTTGCCGTACTGATCGTGCTGGACTTATAGATGCTGCACCATGGATAAG AATTCCATACCCCTTTCAATGGGGAGCACCTACATTTGATGCTGGTGAAGCTTTTGCCATGATGATGGCTTCCTTTGTTGCTCTTGTAGAGTCCACTGGT GCATTTATTGCTGTGTCAAGGTATGCAAGTGCGACTCATATGCCACCTTCCGTTCTTAGCCGTGGTGTTGGCTGGCAGGGAATTGCTATTTTGCTTTCTG GGCTGTTTGGAACTTCAACCGGATCTTCAGTATCTGTAGAGAATGCTGGTCTCTTGGCCTTAACACGAGTTGGCAGCCGAAGGGTTGTACAGATATCTGC AGGATTCATGATTTTCTTCTCCATTCTTGGAAAATTTGGGGCAATCTTTGCTTCAATTCCAGGACCCATTTTTGCCAGTTTATATTGCCTTTTCTTTGCT TACGTGGGTGCTGCTGGTCTTAGCTTTCTTCAGTTCTGTAATCTCAACAGCTTCCGAACAAAGTTCATATTAGGCTTCTCTATTTTCATGGGCTTATCCG TGCCACAGTACTTTAATGAGTACACTGCAATTAAGGGCTATGGTCCCGTTCACACTGGTGGAAGATGGTTCAACGATATTGTAAACGTTCCTTTCTCATC AGAAGCATTTGTTGCGGGCTGCTTGGCTTATTTCCTGGACAACACACTGCATAGAAATGATAGTTCAATCAGGAAAGACAGGGGTAAGCACTGGTGGGAC AAATTCCGATCATACAAGGGTGATACAAGGAGTGAAGAGTTCTATTCCCTGCCCTTTAATCTAAACAAATATTTCCCATCTGTGTAA
AA sequence Show only first row Show all	>Potri.015G072600.3 pacid=42776653 polypeptide=Potri.015G072600.3.p locus=Potri.015G072600 ID=Potri.015G072600.3.v4.1 annot-version=v4.1 MAGGGKAEEPQAHPPREQLPNISYCMTSPPPWPEAILLGFQHYLVMLGTTVLIPSALVPQMGGGNKEKADVIQTLLFVAGLNTLLQSLFGTRLPAVIGGS YTFVPTTISIILSGRFSDEVDPVEKFKRIMRAIQGALIVASTLQIVLGFSGLWRNVTRFLSPLSAVPLVALVGFGLYELGFPGVAKCVEIGLPELIILVF VSQYMPHVIKSGRHIFDRFAVIFAVVIVWIYAHLLTVGGAYNDAAPRTQAICRTDRAGLIDAAPWIRIPYPFQWGAPTFDAGEAFAMMMASFVALVESTG AFIAVSRYASATHMPPSVLSRGVGWQGIAILLSGLFGTSTGSSVSVENAGLLALTRVGSRRVVQISAGFMIFFSILGKFGAIFASIPGPIFASLYCLFFA YVGAAGLSFLQFCNLNSFRTKFILGFSIFMGLSVPQYFNEYTAIKGYGPVHTGGRWFNDIVNVPFSSEAFVAGCLAYFLDNTLHRNDSSIRKDRGKHWWD KFRSYKGDTRSEEFYSLPFNLNKYFPSV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G62890			Xanthine/uracil permease famil...		Potri.015G072600 [exp]	0	1
AT5G62880		ARAC10, ATRAC10...	RHO-RELATED PROTEIN FROM PLANT...		Potri.012G077800 [exp]	4.12	0.8369
AT3G44200		IBO1, ATNEK6	"NIMA \(never in mitosis, gene...		Potri.009G020100 [exp]	6.63	0.8242
AT3G20898			unknown protein		Potri.016G053900 [exp]	9.43	0.7445
AT1G61667			Protein of unknown function, D...		Potri.011G032600 [exp]	9.48	0.8245
AT5G19530		ACL5	ACAULIS 5, S-adenosyl-L-methio...		Potri.010G089200 [exp]	10.39	0.8137
AT5G48740			Leucine-rich repeat protein ki...		Potri.002G242700 [exp]	11.91	0.8271
AT1G38131			O-fucosyltransferase family pr...		Potri.002G087300 [exp]	12.24	0.8180
AT4G28600		NPGR2	no pollen germination related ...		Potri.010G068700 [exp]	16.43	0.7764	Pt-NPGR2.1
AT5G26670			Pectinacetylesterase family pr...		Potri.010G004400 [exp]	17.34	0.7635
AT1G33470			RNA-binding (RRM/RBD/RNP motif...		Potri.013G094400 [exp]	17.91	0.7403

Compare expression of checked genes

Potri.015G072600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.