Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50150 637 / 0 Protein of Unknown Function (DUF239) (.1) AT1G10750 590 / 0 Protein of Unknown Function (DUF239) (.1) AT1G70550 587 / 0 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) AT1G23340 568 / 0 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) AT5G18460 444 / 7e-154 Protein of Unknown Function (DUF239) (.1) AT1G55360 444 / 1e-153 Protein of Unknown Function (DUF239) (.1) AT3G13510 436 / 1e-150 Protein of Unknown Function (DUF239) (.1) AT5G56530 435 / 3e-150 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) AT2G44210 405 / 9e-139 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) AT2G44220 374 / 8e-127 Protein of Unknown Function (DUF239) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G088300 [exp] 753 / 0 AT5G50150 592 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.008G188000 [exp] 635 / 0 AT1G70550 661 / 0.0 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) Potri.010G044300 [exp] 629 / 0 AT1G70550 664 / 0.0 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) Potri.019G024100 [exp] 462 / 7e-161 AT5G18460 622 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.013G050100 [exp] 462 / 9e-161 AT5G18460 635 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.003G221200 [exp] 443 / 2e-153 AT1G55360 716 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.001G233000 [exp] 443 / 2e-153 AT3G13510 621 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.001G003800 [exp] 435 / 3e-150 AT1G55360 689 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.006G233600 [exp] 237 / 3e-73 AT5G25950 310 / 3e-102 Protein of Unknown Function (DUF239) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013046 [exp] 609 / 0 AT1G10750 642 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10029116 [exp] 606 / 0 AT1G10750 642 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10001248 [exp] 591 / 0 AT5G50150 580 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10027683 [exp] 582 / 0 AT5G50150 575 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10039949 [exp] 581 / 0 AT5G50150 575 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10042092 [exp] 547 / 0 AT5G50150 540 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10004766 [exp] 453 / 6e-157 AT5G18460 603 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10013410 [exp] 436 / 8e-151 AT3G13510 708 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10003100 [exp] 437 / 3e-150 AT5G18460 593 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10010315 [exp] 364 / 6e-123 AT3G13510 626 / 0.0 Protein of Unknown Function (DUF239) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03080 [poplar] [flax] Neprosin Neprosin PF14365 [poplar] [flax] Neprosin_AP Neprosin activation peptide
Representative CDS sequence Show only first row Show all	>Potri.015G080300.1 pacid=42775706 polypeptide=Potri.015G080300.1.p locus=Potri.015G080300 ID=Potri.015G080300.1.v4.1 annot-version=v4.1 ATGAAGTTAGATTCATTTCCTTGGACAAAACTCGAGAATTTTGAGCCATTTTGTATTCTTCACACAACAAGACAACCCCAATGTATACAAACAGTAGTTG TTTCTGCAATAAAAACAACAACAATACAGAGACAACAACGACACAGACATTCCAAGAAAATGGCTGCTTCTACTTCTCTTAGCACTCACCCAATGATACC TATTTTTGTTGCTTTCCTCCTTGTTTTTGCTTCTTCTGTTTCTCCTGCCTTGTCGTTACCAGCTCTTGTGTCGGATTCCGGTAGCCGGCTATTAGCCAAT CAAACTTTCAGGCCAAGTAAAGAGGTATTGAGACTAAGGAGAGCCAATGCTTATCTCAAGAAGATCAACAAGCCTGCGGTCAAGACAATTCAGAGCCCTG ATGGTGACGTAATACATTGTGTTTTATCTCATCTTCAACCAGCATTTGACCATCCAGAGCTTAAAGGAAAGAAACCCCTGGATCCACCAGAGAGACCAAG AAGCAATGAAACAAGAGAGACAGTGGCAGAGAGCTACCAGCTATGGACAGATTCAGGTGAATCATGCCCTGAAGGAACTGTTCCAATAAGAAGAACCACA GTAAAAGATGTTTTAAGAGCAAGTTCTGTTAACAGATTTGGCAGAAAATTAAGAAGGCATGTAAGACGAGACTCAACAGGGAGTGGTCATGAGCATGCAG TTGTTTTTGTTAATGGGGATCAGTATTTTGGAGCAAAGGCAAGCATAAATGTTTGGTCACCTCAAGTAACCAGTGAATATGAATTCAGCTTGTCACAAAT TTGGGTCATCTCTGGTTCTTTCGGCAATGATCTTAATACCATAGAAGCCGGTTGGCAGGTTAGCCCAGATTTATATGGAGACGGTTATCCTAGATTCTTC ACGTACTGGACAACCGATGCATACCAAGCTACTGGATGTTATAACTTGCTGTGTTCTGGATTTGTCCAAACCAACAACAAGATTGCCATTGGAGCTGCAA TATCTCCAAGGTCATCTTACAATGGCAGGCAATTTGATATTGGCTTGACGGTTTGGAAGGACCCGAAGCATGGGAACTGGTGGCTGGAATATGGATCAGG ACTCCTGGTGGGATATTGGCCAGCATTTTTGTTCAGTCACTTGAGAAGTCATGCAAGCATGGTACAATTCGGAGGGGAAATTGTGAACTCGAGATCAGCG GGGTACCACACATCAACACAGATGGGCAGTGGTCATTTTGCAGACGAAGGATTTGGAAAAGCATCCTACTTTAGAAACTTGCAAGTTGTGGATTGGGATA ATAATTTGCTGCCTCTAACAAATCTTCATCTCTTGGCTGATCATCCAAACTGTTATAATATAAGGCAAGGCAGAAACAATGTTTGGGGGACTTACTTCTA CTATGGAGGTCCTGGGAGGAATGTAAGGTGTCCATGA
AA sequence Show only first row Show all	>Potri.015G080300.1 pacid=42775706 polypeptide=Potri.015G080300.1.p locus=Potri.015G080300 ID=Potri.015G080300.1.v4.1 annot-version=v4.1 MKLDSFPWTKLENFEPFCILHTTRQPQCIQTVVVSAIKTTTIQRQQRHRHSKKMAASTSLSTHPMIPIFVAFLLVFASSVSPALSLPALVSDSGSRLLAN QTFRPSKEVLRLRRANAYLKKINKPAVKTIQSPDGDVIHCVLSHLQPAFDHPELKGKKPLDPPERPRSNETRETVAESYQLWTDSGESCPEGTVPIRRTT VKDVLRASSVNRFGRKLRRHVRRDSTGSGHEHAVVFVNGDQYFGAKASINVWSPQVTSEYEFSLSQIWVISGSFGNDLNTIEAGWQVSPDLYGDGYPRFF TYWTTDAYQATGCYNLLCSGFVQTNNKIAIGAAISPRSSYNGRQFDIGLTVWKDPKHGNWWLEYGSGLLVGYWPAFLFSHLRSHASMVQFGGEIVNSRSA GYHTSTQMGSGHFADEGFGKASYFRNLQVVDWDNNLLPLTNLHLLADHPNCYNIRQGRNNVWGTYFYYGGPGRNVRCP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G50150			Protein of Unknown Function (D...		Potri.015G080300 [exp]	0	1
AT2G05790			O-Glycosyl hydrolases family 1...		Potri.014G158400 [exp]	1.41	0.9186
AT1G78060			Glycosyl hydrolase family prot...		Potri.002G094000 [exp]	2.00	0.8930
AT1G63850			BTB/POZ domain-containing prot...		Potri.001G100900 [exp]	2.44	0.8863
AT3G18050			unknown protein		Potri.015G040900 [exp]	3.46	0.8835
AT4G30020			PA-domain containing subtilase...		Potri.018G143400 [exp]	4.47	0.8631
AT3G13510			Protein of Unknown Function (D...		Potri.001G233000 [exp]	4.58	0.8218
AT5G15350		AtENODL17	early nodulin-like protein 17 ...		Potri.003G183300 [exp]	4.89	0.8795
AT4G23820			Pectin lyase-like superfamily ...		Potri.003G139100 [exp]	5.47	0.8806
AT3G63200		PLP9, PLAIIIB ,...	PATATIN-like protein 9 (.1)		Potri.005G210100 [exp]	5.47	0.8143
AT4G04930		DES-1-LIKE	fatty acid desaturase family p...		Potri.011G050800 [exp]	6.24	0.8490

Compare expression of checked genes

Potri.015G080300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.