Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50130 454 / 2e-161 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT4G24050 342 / 2e-117 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G64590 310 / 5e-105 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G37540 288 / 3e-96 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G02540 267 / 7e-88 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G23430 263 / 1e-86 AtTic32-IVa translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT4G23420 263 / 1e-86 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT4G11410 246 / 5e-80 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G53090 109 / 4e-27 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G09750 105 / 5e-26 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T124508 [exp] 686 / 0 AT5G50130 454 / 2e-161 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.012G087800 [exp] 590 / 0 AT5G50130 426 / 4e-150 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.001G086900 [exp] 323 / 1e-109 AT4G24050 441 / 2e-156 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.003G144100 [exp] 294 / 2e-98 AT4G24050 397 / 9e-139 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G103000 [exp] 283 / 1e-94 AT4G11410 446 / 4e-159 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G083900 [exp] 281 / 1e-93 AT5G02540 452 / 3e-161 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.003G128700 [exp] 270 / 2e-89 AT4G11410 497 / 4e-179 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.003G128800 [exp] 262 / 2e-86 AT4G23420 442 / 5e-157 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.015G146600 [exp] 252 / 3e-82 AT4G23420 444 / 6e-158 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042088 [exp] 452 / 4e-160 AT5G50130 460 / 3e-163 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10018092 [exp] 380 / 1e-131 AT5G50130 403 / 1e-140 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10003204 [exp] 334 / 5e-114 AT4G24050 499 / 3e-179 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10017308 [exp] 310 / 2e-104 AT4G24050 495 / 1e-177 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10023762 [exp] 290 / 4e-97 AT2G37540 429 / 8e-152 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10024415 [exp] 283 / 3e-94 AT5G02540 471 / 4e-168 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10035481 [exp] 272 / 5e-90 AT4G23430 479 / 6e-172 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10032281 [exp] 272 / 6e-90 AT4G11410 447 / 2e-159 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10031101 [exp] 270 / 3e-89 AT4G23430 478 / 1e-171 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10024647 [exp] 269 / 6e-89 AT4G11410 461 / 1e-164 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00106 [poplar] [flax] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Potri.015G081102.1 pacid=42774808 polypeptide=Potri.015G081102.1.p locus=Potri.015G081102 ID=Potri.015G081102.1.v4.1 annot-version=v4.1 ATGAAGGAAACATGGAGATATCTAGCAGGCATTGCAGGCCCAAGTGGTTATGGCTCAAATTCAACTGCTGAGCAAGTTATTCAAGATTCTGCTTGCTTAG TCCCTCCCCATTTAACTGCCATCATCACTGGGGCTACATCAGGTATTGGAGTGGAAACAGCAAGAGCACTAGCTAAAAAGGGTATGAGAATAGTGATTCC TGCAAGGGACTTGAAAAAGGCAGCTGGAGTAAAGGAAGCGATACAAAAAGAGAGTCCAAATGCAGAGATAATAATATTTGAGACTGATATGAGCTCGTTT GTTTCTGTAAAGAGATTTTGTTCTGGTTTTCTTGCTCTTGGACTACCCCTGAACATCCTCATAAATAATGCTGGAATATACTCTCAGAAATTGGAGTTCT CTGAAGACAAAATCGAAATGACATTTGCTACGAATTACTTGGGGCATTATTTGATGACAGAGCTGCTGTTAGAGAAAATGATAGAAACAGCAGAGCAGAC AGGCATCCAAGGAAGAATAATAAATCTCTCGTCTGTAATTCACAGCTGGGTGAAGAGAGATGCTTTTTGCCTCCAGAAAATGCTAAGCCCGAAGAGCTAT GATGGGACACGTGCATATTCTCAGTCCAAATTGGCTAATATATTGCACGTCAAGGAAATAGCCAGACAGCTCAGGGCAAGGAATGCAAGAGTAACTATCA ATGCGGTACATCCAGGCATTGTGAAGACTGGAATATTGAGAGCTAGTTATAAGGGCTTCCTCACAGATTCCCTTTACTTCATTGCGTCCAAGTTACTAAA ATCAACATCTCAGGGTGCATCAACCACATGTTATGTTGCTTTGAGTCAGCAAATAGAAGGTGTGAGTGGCAAATACTTCGCAGACTGTAATGAAAGTAAA TGTTCAACTCTGGCAAATGATGAATCTGAAGCACAGAAACTGTGGATGCAAACCCATGCACTGATGCAGAGATATCTGTATCTACCAGCAGCATAG
AA sequence Show only first row Show all	>Potri.015G081102.1 pacid=42774808 polypeptide=Potri.015G081102.1.p locus=Potri.015G081102 ID=Potri.015G081102.1.v4.1 annot-version=v4.1 MKETWRYLAGIAGPSGYGSNSTAEQVIQDSACLVPPHLTAIITGATSGIGVETARALAKKGMRIVIPARDLKKAAGVKEAIQKESPNAEIIIFETDMSSF VSVKRFCSGFLALGLPLNILINNAGIYSQKLEFSEDKIEMTFATNYLGHYLMTELLLEKMIETAEQTGIQGRIINLSSVIHSWVKRDAFCLQKMLSPKSY DGTRAYSQSKLANILHVKEIARQLRARNARVTINAVHPGIVKTGILRASYKGFLTDSLYFIASKLLKSTSQGASTTCYVALSQQIEGVSGKYFADCNESK CSTLANDESEAQKLWMQTHALMQRYLYLPAA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G50130			NAD(P)-binding Rossmann-fold s...		Potri.015G081102 [exp]	0	1
AT1G72770		HAB1	HYPERSENSITIVE TO ABA1, homolo...		Potri.003G044200 [exp]	10.09	0.7154
AT5G63220			unknown protein		Potri.008G044100 [exp]	16.52	0.7838
AT4G09570		CPK4, ATCPK4	calcium-dependent protein kina...		Potri.019G083200 [exp]	17.34	0.7606
AT1G33970			P-loop containing nucleoside t...		Potri.019G077300 [exp]	18.73	0.7539
AT3G11090	AS2	LBD21	LOB domain-containing protein ...		Potri.008G071500 [exp]	18.97	0.7410
AT4G34490		ATCAP1	cyclase associated protein 1 (...		Potri.004G153900 [exp]	21.54	0.7658	CAP1.1
AT4G33250		ATTIF3K1, EIF3K	eukaryotic translation initiat...		Potri.018G063600 [exp]	24.08	0.8038	TIF3.1
AT3G60890		ZPR2	LITTLE ZIPPER 2, protein bindi...		Potri.001G114900 [exp]	26.32	0.7162
AT3G58650			unknown protein		Potri.010G140900 [exp]	30.98	0.7431
AT4G14147		ARPC4	protein binding (.1.2)		Potri.017G057400 [exp]	36.44	0.7566

Compare expression of checked genes

Potri.015G081102 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.