Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G57560 255 / 8e-83 MYB ATMYB50 myb domain protein 50 (.1) AT5G26660 249 / 6e-80 MYB ATMYB4, ATMYB86 myb domain protein 86 (.1) AT4G01680 244 / 2e-78 MYB ATMYB55 myb domain protein 55 (.1.2.3) AT1G09540 242 / 4e-77 MYB AtMYB61 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 61, myb domain protein 61 (.1) AT3G13890 211 / 3e-65 MYB ATMYB26, MS35 MALE STERILE 35, myb domain protein 26 (.1.2) AT3G12720 208 / 1e-64 MYB ATMYB67, AtY53 myb domain protein 67 (.1) AT1G63910 205 / 8e-63 MYB AtMYB103 myb domain protein 103 (.1) AT3G61250 200 / 7e-62 MYB LMI2, ATMYB17 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) AT4G12350 197 / 5e-61 MYB ATMYB42 myb domain protein 42 (.1) AT4G34990 196 / 2e-60 MYB ATMYB32 myb domain protein 32 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G084100 [exp] 667 / 0 AT5G26660 253 / 1e-81 myb domain protein 86 (.1) Potri.005G001600 [exp] 254 / 6e-81 AT1G09540 376 / 1e-128 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 61, myb domain protein 61 (.1) Potri.014G111200 [exp] 254 / 2e-80 AT4G01680 282 / 3e-93 myb domain protein 55 (.1.2.3) Potri.013G001000 [exp] 253 / 2e-80 AT1G09540 382 / 1e-130 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 61, myb domain protein 61 (.1) Potri.002G185900 [exp] 248 / 2e-78 AT1G09540 291 / 5e-95 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 61, myb domain protein 61 (.1) Potri.010G004300 [exp] 239 / 2e-76 AT1G57560 247 / 4e-80 myb domain protein 50 (.1) Potri.001G197000 [exp] 212 / 2e-65 AT3G13890 256 / 1e-82 MALE STERILE 35, myb domain protein 26 (.1.2) Potri.003G155700 [exp] 210 / 4e-65 AT3G12720 240 / 1e-77 myb domain protein 67 (.1) Potri.008G081600 [exp] 209 / 7e-65 AT3G12720 262 / 2e-86 myb domain protein 67 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038022 [exp] 251 / 2e-79 AT4G01680 273 / 8e-90 myb domain protein 55 (.1.2.3) Lus10015608 [exp] 212 / 2e-65 AT3G13890 249 / 8e-80 MALE STERILE 35, myb domain protein 26 (.1.2) Lus10038395 [exp] 208 / 8e-65 AT3G12720 233 / 2e-75 myb domain protein 67 (.1) Lus10001226 [exp] 207 / 2e-64 AT3G12720 231 / 8e-75 myb domain protein 67 (.1) Lus10027197 [exp] 198 / 1e-61 AT1G66230 249 / 6e-83 myb domain protein 20 (.1) Lus10032226 [exp] 200 / 2e-61 AT4G12350 295 / 7e-100 myb domain protein 42 (.1) Lus10038913 [exp] 197 / 4e-61 AT1G66230 247 / 3e-82 myb domain protein 20 (.1) Lus10024589 [exp] 198 / 6e-61 AT4G12350 298 / 6e-101 myb domain protein 42 (.1) Lus10030378 [exp] 197 / 2e-60 AT3G61250 341 / 8e-118 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Lus10014784 [exp] 196 / 3e-60 AT3G61250 342 / 1e-118 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.015G082700.1 pacid=42775304 polypeptide=Potri.015G082700.1.p locus=Potri.015G082700 ID=Potri.015G082700.1.v4.1 annot-version=v4.1 ATGGGACGACATTCTTGTTGTTTAAAGCAAAAATTAAGGAAAGGTTTGTGGTCACCTGAAGAAGATGAGAAACTACTCAATTATATAACTAGATTTGGTG TTGGTTGCTGGAGTTCTGTTCCTAAGCTAGCTGGTCTGCAAAGGTGTGGAAAGAGTTGCAGGTTGAGATGGATAAACTACCTGAGACCTGATCTTAAAAG AGGAATGTTCTCTCAGCAAGAGGAGGATCTAATAATCAGTCTTCATGAAGTTTTGGGTAACAGGTGGGCTCAAATTGCTGCACAGTTACCAGGAAGAACA GATAATGAGATTAAGAACTTATGGAATTCCTATCTGAAGAAGAAGCTTATGAAGCAAGGTATTGACCCAACAACCCACAAGCCTCTATGTCAAGTGGGGG TGAAAGAGGAGAAGGATTGTACAGAGAAGGCATCTTTCCAAATACCACAGTCTAAAGGGTTGCCAATCGTATCAAACTTCACTGCACAAGAGCCAGCATT TCTCATTAATGATACTACTTACAATAGCAGTGGATTACCAGAAGTTTCAAGAGAGCAATTTCTCAACAAGCAAGCCTATGATCCTTTATCCTACTTTGAA TTCCCTGCCGGTATTGATCTTACTGGGTATAATCCAAGCCTTTCAAGTGTGTATCATCCAACTGTTAGATCTCTTGATCAAAACCAATTTGAAACAAGTT CCAACTTTGGATTCACTTCAATGCCAAGTTTAACAAGTTTTGACCATGGAAGTATGAGTGGGACGGATTTCTCCGATAACTCGGCTTCAAGAATGAGTTC AATGTTCTTGAACGAGGCAAAGGAAAGTTCCAGTAACAGTTCAAACATCAGCAATTATGCAGGATACCAGATGAACAATATGGTGGAGAATGCAGCAGCT TTCTCATCATGGGATTCTGATGATCATAAGTTAGAGTCGGTGTTTCAATATCACCAAGTCAATGGGGTCAAGACAGAAGAATTGAAGCCTAGCCCATGGC ATGAAGCTGGACGGCTCCATACTCATCAGAATTCAGTAGATTTCAATAGCTATCCGTTAACGTCGCTGTCAGAAGATATAACAGGAGCAAATTTTGATGT CTTCCACCAGATATGA
AA sequence Show only first row Show all	>Potri.015G082700.1 pacid=42775304 polypeptide=Potri.015G082700.1.p locus=Potri.015G082700 ID=Potri.015G082700.1.v4.1 annot-version=v4.1 MGRHSCCLKQKLRKGLWSPEEDEKLLNYITRFGVGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGMFSQQEEDLIISLHEVLGNRWAQIAAQLPGRT DNEIKNLWNSYLKKKLMKQGIDPTTHKPLCQVGVKEEKDCTEKASFQIPQSKGLPIVSNFTAQEPAFLINDTTYNSSGLPEVSREQFLNKQAYDPLSYFE FPAGIDLTGYNPSLSSVYHPTVRSLDQNQFETSSNFGFTSMPSLTSFDHGSMSGTDFSDNSASRMSSMFLNEAKESSSNSSNISNYAGYQMNNMVENAAA FSSWDSDDHKLESVFQYHQVNGVKTEELKPSPWHEAGRLHTHQNSVDFNSYPLTSLSEDITGANFDVFHQI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G57560	MYB	ATMYB50	myb domain protein 50 (.1)		Potri.015G082700 [exp]	0	1
AT2G45040			Matrixin family protein (.1)		Potri.014G058200 [exp]	2.44	0.9504
AT5G60020		LAC17, ATLAC17	laccase 17 (.1)		Potri.006G087500 [exp]	2.44	0.9538	LAC110c
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Potri.006G129200 [exp]	3.16	0.9533	Pt-FLA11.1
AT5G26660	MYB	ATMYB4, ATMYB86	myb domain protein 86 (.1)		Potri.012G084100 [exp]	5.65	0.9235
AT4G20050		QRT3	QUARTET 3, Pectin lyase-like s...		Potri.003G074600 [exp]	6.00	0.9270	QRT3.2
AT5G27490			Integral membrane Yip1 family ...		Potri.005G033900 [exp]	7.07	0.9476
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Potri.016G088700 [exp]	8.71	0.9496	Pt-FLA11.2
AT5G11980			conserved oligomeric Golgi com...		Potri.006G225500 [exp]	10.90	0.9404
AT4G31480			Coatomer, beta subunit (.1.2)		Potri.018G007400 [exp]	10.95	0.9424
AT1G66810	C3HZnF	AtC3H14	Zinc finger C-x8-C-x5-C-x3-H t...		Potri.004G095100 [exp]	13.78	0.9233

Compare expression of checked genes

Potri.015G082700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.