Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66350 257 / 3e-79 GRAS RGL1 RGA-like 1 (.1) AT5G17490 248 / 1e-75 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1) AT1G14920 246 / 8e-75 GRAS RGA2, GAI RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) AT3G03450 246 / 1e-74 GRAS RGL2 RGA-like 2 (.1) AT2G01570 242 / 8e-73 GRAS RGA1 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) AT1G21450 242 / 1e-72 GRAS SCL1 SCARECROW-like 1 (.1) AT5G48150 224 / 3e-67 GRAS PAT1 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) AT2G04890 213 / 1e-63 GRAS SCL21 SCARECROW-like 21 (.1) AT3G54220 214 / 1e-61 GRAS SGR1, SCR SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) AT5G41920 205 / 1e-60 GRAS GRAS family transcription factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G093900 [exp] 878 / 0 AT1G66350 257 / 2e-79 RGA-like 1 (.1) Potri.005G095100 [exp] 321 / 1e-103 AT1G66350 252 / 3e-77 RGA-like 1 (.1) Potri.001G326000 [exp] 299 / 2e-93 AT1G66350 296 / 2e-92 RGA-like 1 (.1) Potri.010G110700 [exp] 255 / 1e-77 AT2G01570 764 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.008G131700 [exp] 254 / 4e-77 AT2G01570 781 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.017G125200 [exp] 250 / 2e-75 AT2G01570 701 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.004G089800 [exp] 244 / 1e-73 AT2G01570 709 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.002G073400 [exp] 232 / 5e-69 AT1G21450 707 / 0.0 SCARECROW-like 1 (.1) Potri.005G186500 [exp] 231 / 1e-68 AT1G21450 685 / 0.0 SCARECROW-like 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017930 [exp] 669 / 0 AT1G66350 241 / 2e-73 RGA-like 1 (.1) Lus10037055 [exp] 602 / 0 AT1G66350 258 / 5e-80 RGA-like 1 (.1) Lus10036932 [exp] 600 / 0 AT1G66350 258 / 1e-79 RGA-like 1 (.1) Lus10014786 [exp] 525 / 0 AT2G01570 186 / 7e-53 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10031172 [exp] 311 / 8e-99 AT3G03450 257 / 5e-78 RGA-like 2 (.1) Lus10041540 [exp] 310 / 9e-98 AT1G66350 317 / 2e-100 RGA-like 1 (.1) Lus10031748 [exp] 305 / 2e-96 AT3G03450 248 / 2e-74 RGA-like 2 (.1) Lus10012554 [exp] 308 / 5e-96 AT1G66350 318 / 1e-99 RGA-like 1 (.1) Lus10022418 [exp] 245 / 1e-75 AT1G50420 592 / 0.0 scarecrow-like 3 (.1) Lus10033583 [exp] 248 / 8e-75 AT2G01570 681 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF03514 [poplar] [flax] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Potri.015G091200.1 pacid=42775377 polypeptide=Potri.015G091200.1.p locus=Potri.015G091200 ID=Potri.015G091200.1.v4.1 annot-version=v4.1 ATGGCTCATAGTTTCTTGTCAGGGGAGTTCAATGATGAAAACGTAAGTGAAACGAGTGGCCTTGATCTCAGTCTTTCAGCTATGGCTTGCTACCCGCGCC CCCCTTATTTGCCAACATTTGATAGCAATGCCGTTTCATGGATCCTTCCTTTTTCGGATGACACCAGAGATGCTAAGAGGATGAGACGATCCTCGAGTCT GGTTGAATCCATAAGAAGTAATAATAGCAGCCTTTATAGTGGTGGAAGCAGCATTTGCCGCAGCATTAGCACTAATATCTTGAATAGCATCCCTAAGCTT CATTTCAGAGATCACATATGGACTTATACGCAAAGATATCTTGCAGCTGAGGCTGTCGAGGAGGCAGCATCAGAAGCGATGATCAATGCTGATGAAGGTG GAAATGAAGAAGAAGGGAATGCTGATGGAATGAGACTTGTTCAGCTTCTAATTGCTTGTGCTGAAGCTGTGGCATGTCGTGACAAGTCACATGCCTCAGC CTTGTTATCTGAGCTCCGATCTAATGCTTTGGTATTTGGCTCTTCTTTCCAACGTGTGGCTTCTTGCTTCGTCCAAGGCCTTACCGACAGGCTCTCTCTG GTTCAACCACTAGGGGCGGTTGGTTTTGTTCCCACGATGAACATAATGGACATTGCCTCGGATAAGAAGGAAGAAGCTTTACGCCTTGTTTATGAAATTT GCCCACATATTCGGTTCGGTCACTTTGTTGCCAATAATGCTATTTTGGAAGCCTTTGAGGGAGAGAGTTTTGTTCATGTGGTGGACCTAGGAATGACACT TGGATTATCACACGGTCACCAATGGCGCCGGCTTATTGAAAGCCTCGCCGAACGTGCTGGAAAAGCACCCAGCCGCCTTCGAATAACTGGTGTTGGCCTT TGCGTTGATAGATTCCGGATCATCGGTGATGAACTCAAGGAATATGCAAAAGACATGGGAATCAATTTAGAGTTCTCAGCTGTGGAAAGCAACTTGGAAA ACTTAAGGCCTGAAGACATCAAAATCAATGAAGGTGAAGTTCTAGTAGTCAACAGCATTCTTCAACTCCATTGCGTGGTTAAAGAAAGTAGGGGAGCTCT GAATTCTGTCCTGCAGATTGTTCATGAGCTCTCACCAAAGGTTCTTGTTCTAGTTGAACAAGATTCAAGCCACAACGGTCCATTTTTTCTAGGAAGATTC ATGGAGGCACTGCATTACTATTCCGCGATTTTTGACTCCTTGGACGCCATGCTGCCCAAATACGACACCAGGAGAGCCAAGATGGAGCAGTTTTATTTCG CAGAGGAGATAAAGAACATTGTGAGCTGTGAGGGGCCAGCAAGGGTAGAGCGGCATGAGAGGGTGTATCAGTGGCGCAGGAGGATGAGCCGTGCAGGATT TCAGGCTGCCCCCATTAAGATGATGGCTCAGGCAAAGCAATGGCTGGTGAAGAATAAGGTTTGTGATGGATACACAGTTGTTGAAGAGAAAGGGTGCTTG GTTCTTGGCTGGAAATCGAAGCCTATAATTGCAGCTTCTTGCTGGAAATGCTTAATAAATAGCAGCCAATAA
AA sequence Show only first row Show all	>Potri.015G091200.1 pacid=42775377 polypeptide=Potri.015G091200.1.p locus=Potri.015G091200 ID=Potri.015G091200.1.v4.1 annot-version=v4.1 MAHSFLSGEFNDENVSETSGLDLSLSAMACYPRPPYLPTFDSNAVSWILPFSDDTRDAKRMRRSSSLVESIRSNNSSLYSGGSSICRSISTNILNSIPKL HFRDHIWTYTQRYLAAEAVEEAASEAMINADEGGNEEEGNADGMRLVQLLIACAEAVACRDKSHASALLSELRSNALVFGSSFQRVASCFVQGLTDRLSL VQPLGAVGFVPTMNIMDIASDKKEEALRLVYEICPHIRFGHFVANNAILEAFEGESFVHVVDLGMTLGLSHGHQWRRLIESLAERAGKAPSRLRITGVGL CVDRFRIIGDELKEYAKDMGINLEFSAVESNLENLRPEDIKINEGEVLVVNSILQLHCVVKESRGALNSVLQIVHELSPKVLVLVEQDSSHNGPFFLGRF MEALHYYSAIFDSLDAMLPKYDTRRAKMEQFYFAEEIKNIVSCEGPARVERHERVYQWRRRMSRAGFQAAPIKMMAQAKQWLVKNKVCDGYTVVEEKGCL VLGWKSKPIIAASCWKCLINSSQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G66350	GRAS	RGL1	RGA-like 1 (.1)		Potri.015G091200 [exp]	0	1
AT5G45890		SAG12	senescence-associated gene 12 ...		Potri.007G075100 [exp]	1.41	0.9996
AT2G42250		CYP712A1	"cytochrome P450, family 712, ...		Potri.016G052600 [exp]	3.46	0.9989
AT5G45890		SAG12	senescence-associated gene 12 ...		Potri.007G075300 [exp]	3.87	0.9991
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Potri.003G118500 [exp]	5.29	0.9980
AT3G08680			Leucine-rich repeat protein ki...		Potri.003G138900 [exp]	6.00	0.9968
AT5G59100			Subtilisin-like serine endopep...		Potri.010G196800 [exp]	6.32	0.9981
AT1G16060	AP2_ERF	ADAP	ARIA-interacting double AP2 do...		Potri.006G179900 [exp]	9.38	0.9969
AT4G14746			unknown protein		Potri.003G057700 [exp]	9.48	0.9953
AT1G16250			Galactose oxidase/kelch repeat...		Potri.004G037400 [exp]	10.09	0.9955
AT1G79620			Leucine-rich repeat protein ki...		Potri.008G125600 [exp]	10.67	0.9804

Compare expression of checked genes

Potri.015G091200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.