Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PtrLHT1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40780 610 / 0 LHT1, LTH1 lysine histidine transporter 1 (.1.2) AT1G24400 598 / 0 ATLHT2, AATL2, LHT2 ARABIDOPSIS LYSINE HISTIDINE TRANSPORTER 2, AMINO ACID TRANSPORTER-LIKE PROTEIN 2, lysine histidine transporter 2 (.1) AT1G67640 594 / 0 Transmembrane amino acid transporter family protein (.1) AT1G48640 566 / 0 Transmembrane amino acid transporter family protein (.1) AT1G61270 490 / 5e-172 Transmembrane amino acid transporter family protein (.1) AT1G71680 473 / 3e-165 Transmembrane amino acid transporter family protein (.1) AT3G01760 470 / 4e-164 Transmembrane amino acid transporter family protein (.1) AT1G25530 454 / 3e-158 Transmembrane amino acid transporter family protein (.1) AT1G47670 242 / 3e-74 Transmembrane amino acid transporter family protein (.1) AT4G35180 177 / 4e-50 LHT7 LYS/HIS transporter 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G335300 [exp] 612 / 0 AT5G40780 752 / 0.0 lysine histidine transporter 1 (.1.2) Potri.001G335200 [exp] 607 / 0 AT5G40780 697 / 0.0 lysine histidine transporter 1 (.1.2) Potri.008G179000 [exp] 603 / 0 AT1G24400 654 / 0.0 ARABIDOPSIS LYSINE HISTIDINE TRANSPORTER 2, AMINO ACID TRANSPORTER-LIKE PROTEIN 2, lysine histidine transporter 2 (.1) Potri.010G055800 [exp] 592 / 0 AT5G40780 670 / 0.0 lysine histidine transporter 1 (.1.2) Potri.010G128300 [exp] 474 / 7e-166 AT1G25530 687 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.008G118000 [exp] 472 / 3e-165 AT1G25530 677 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.014G036500 [exp] 251 / 1e-77 AT1G47670 922 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.002G012900 [exp] 244 / 5e-75 AT1G47670 577 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.004G181200 [exp] 219 / 1e-65 AT1G47670 504 / 3e-175 Transmembrane amino acid transporter family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041581 [exp] 613 / 0 AT5G40780 798 / 0.0 lysine histidine transporter 1 (.1.2) Lus10022329 [exp] 613 / 0 AT5G40780 798 / 0.0 lysine histidine transporter 1 (.1.2) Lus10014606 [exp] 602 / 0 AT5G40780 746 / 0.0 lysine histidine transporter 1 (.1.2) Lus10014605 [exp] 599 / 0 AT5G40780 744 / 0.0 lysine histidine transporter 1 (.1.2) Lus10041580 [exp] 519 / 0 AT5G40780 652 / 0.0 lysine histidine transporter 1 (.1.2) Lus10008263 [exp] 502 / 2e-175 AT1G71680 572 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10041482 [exp] 456 / 1e-158 AT1G25530 666 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10032074 [exp] 448 / 3e-156 AT5G40780 535 / 0.0 lysine histidine transporter 1 (.1.2) Lus10034283 [exp] 393 / 2e-135 AT1G25530 542 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10011668 [exp] 253 / 1e-78 AT1G47670 918 / 0.0 Transmembrane amino acid transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [poplar] [flax] APC PF01490 [poplar] [flax] Aa_trans Transmembrane amino acid transporter protein
Representative CDS sequence Show only first row Show all	>Potri.015G091600.1 pacid=42775969 polypeptide=Potri.015G091600.1.p locus=Potri.015G091600 ID=Potri.015G091600.1.v4.1 annot-version=v4.1 ATGAATCAAATGCAGCCAGTAAAGGATATCTCAAGCATTGAGAATGCAAAGAATGACAATGCGAAGAAAGACATGAATGACTGGCTTCCCATCACCAAGT CTAGGAATGCAAAGTGGTGGTATTCTGCCTTTCACAATGTTACAGCCATGGTTGGTGCTGGGGTCCTGGGCCTCCCATATGCCATGTCTCAACTTGGATG GGGTCCCGGTGCTGCTGTATTGATCCTGTCATGGGTTATCACTCTATATACACTATGGCAGATGGTGGAGATGCATGAAATGGTGCCTGGAAAGAGATTT GATAGGTATCATGAGTTAGGGCAGCATGCATTTGGTGAAAAACTTGGGCTTTGGGTGGTGGTTCCCCAGCAACTAATGGTGGAAGTGGGTTCGAGTATAG TGTATATGATCACTGGAGGGAAATCTCTGAAGAAGGCTCATGATACTATCTGGCCTAACTACAAAGAAATCAAACTTACCTATTTCATCATGATCTTTTC CTCGGTTCACTTTGTCATCTCTCATCTCCCCAGTTTCAACTCCATCACCGTTGTCTCTCTTGCCGCTGCCGTCATGTCCTTGAGTTACTCGACTATTGCG TGGGTGGTTTCATGGCACAAAGGGGTTCAACCAGATGTGCAGTATACCTCAAGGGCTTCAACAAATACCGGGCAGATGTTCGACAGCTTCAGTGCTCTAG GAGATATAGCTTTTGCCTTCGCAGGGCACAGTGTGGCGTTGGAGATCCAGGCAACAATCCCTTCCACACCAGGGAAGCCTTCCAAGAAACCAATGTGGAA AGGAGTGGTTGTTGCTTATCTTGTTGTCGCTTTGTGTTACTTACCTGTTAGTTTCGTAGGTTACTGGGTGTTTGGAAACAAAGTTGAGGACAACATACTC TTATCACTAGAGAAGCCTCGTTGGCTTGTTGCCGTCGCTAATTTGTTTGTTGTCATTCATGTCATTGGAAGCTATCAGGTTTTTGCAATGCCGGTGTTTG ATATGATGGAAGCATTCCTAGTCTTGAAAATGAATTTCCAACCGGGTCAGCCGCTTCGCTTCATAACACGAATTCTATATGTTGGATTGACCATGTTCAT CGCAATGACATTCCCATTTTTTGGTGGGCTTCTAAGTTTCTTTGGAGGATTTGCCTTTGCTCCCACCTCATACTATCTCCCCTGCGTCATTTGGCTTGCT ATATATAAACCAAAGAAATTCAGCTTGTCATGGCTCGCAAATTGGATATGCATTATCCTTGGCGTTGTATTGATGGTATTAGCCCCCATTGGAGCATTAA GGCAGATAATACTACAAGCCAGGGACTTCCAGTTTTACTCTTGA
AA sequence Show only first row Show all	>Potri.015G091600.1 pacid=42775969 polypeptide=Potri.015G091600.1.p locus=Potri.015G091600 ID=Potri.015G091600.1.v4.1 annot-version=v4.1 MNQMQPVKDISSIENAKNDNAKKDMNDWLPITKSRNAKWWYSAFHNVTAMVGAGVLGLPYAMSQLGWGPGAAVLILSWVITLYTLWQMVEMHEMVPGKRF DRYHELGQHAFGEKLGLWVVVPQQLMVEVGSSIVYMITGGKSLKKAHDTIWPNYKEIKLTYFIMIFSSVHFVISHLPSFNSITVVSLAAAVMSLSYSTIA WVVSWHKGVQPDVQYTSRASTNTGQMFDSFSALGDIAFAFAGHSVALEIQATIPSTPGKPSKKPMWKGVVVAYLVVALCYLPVSFVGYWVFGNKVEDNIL LSLEKPRWLVAVANLFVVIHVIGSYQVFAMPVFDMMEAFLVLKMNFQPGQPLRFITRILYVGLTMFIAMTFPFFGGLLSFFGGFAFAPTSYYLPCVIWLA IYKPKKFSLSWLANWICIILGVVLMVLAPIGALRQIILQARDFQFYS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G40780		LHT1, LTH1	lysine histidine transporter 1...		Potri.015G091600 [exp]	0	1	PtrLHT1
AT4G09960	MADS	AGL11, STK	SEEDSTICK, AGAMOUS-like 11, K-...		Potri.013G104900 [exp]	3.46	0.7835	AGL11.2
AT5G28780			PIF1 helicase (.1)		Potri.003G004501 [exp]	5.09	0.7805
					Potri.012G100750 [exp]	8.83	0.7805
AT1G69940		ATPPME1	Pectin lyase-like superfamily ...		Potri.012G114900 [exp]	10.58	0.7797
AT1G43760			DNAse I-like superfamily prote...		Potri.010G033133 [exp]	11.66	0.7374
					Potri.007G065950 [exp]	13.41	0.6662
AT1G43760			DNAse I-like superfamily prote...		Potri.003G047001 [exp]	13.67	0.6646
AT3G30180		CYP85A2, BR6OX2	brassinosteroid-6-oxidase 2 (....		Potri.010G156800 [exp]	17.88	0.6148
AT5G59460			scarecrow-like transcription f...		Potri.001G242104 [exp]	23.23	0.5897
AT1G22130	MADS	AGL104	AGAMOUS-like 104 (.1)		Potri.002G092300 [exp]	23.32	0.5033

Compare expression of checked genes

Potri.015G091600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.