Plant FIBer expression Database

Potri.015G100400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G47620 395 / 5e-132 CHB1, ATSWI3A SWITCH/sucrose nonfermenting 3A (.1)
AT1G21700 127 / 2e-30 CHB4, ATSWI3C SWITCH/sucrose nonfermenting 3C (.1)
AT4G34430 118 / 1e-27 ATSWI3D, CHB3 SWITCH/SUCROSE NONFERMENTING 3D, DNA-binding family protein (.1.2.3.4)
AT2G33610 104 / 9e-24 CHB2, ATSWI3B CHROMATIN REMODELING COMPLEX SUBUNIT B, switch subunit 3 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G004800
[exp]
150 / 4e-39 AT2G33610 435 / 3e-149 CHROMATIN REMODELING COMPLEX SUBUNIT B, switch subunit 3 (.1)
Potri.002G080600
[exp]
142 / 1e-35 AT1G21700 679 / 0.0 SWITCH/sucrose nonfermenting 3C (.1)
Potri.005G180800
[exp]
141 / 3e-35 AT1G21700 692 / 0.0 SWITCH/sucrose nonfermenting 3C (.1)
Potri.009G114900
[exp]
140 / 7e-35 AT4G34430 727 / 0.0 SWITCH/SUCROSE NONFERMENTING 3D, DNA-binding family protein (.1.2.3.4)
Potri.004G153300
[exp]
139 / 2e-34 AT4G34430 711 / 0.0 SWITCH/SUCROSE NONFERMENTING 3D, DNA-binding family protein (.1.2.3.4)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10043188
[exp]
504 / 9e-174 AT2G47620 382 / 4e-127 SWITCH/sucrose nonfermenting 3A (.1)
Lus10032555
[exp]
489 / 2e-168 AT2G47620 371 / 3e-123 SWITCH/sucrose nonfermenting 3A (.1)
Lus10016043
[exp]
174 / 6e-48 AT2G33610 429 / 4e-147 CHROMATIN REMODELING COMPLEX SUBUNIT B, switch subunit 3 (.1)
Lus10025165
[exp]
166 / 8e-44 AT2G33610 422 / 3e-142 CHROMATIN REMODELING COMPLEX SUBUNIT B, switch subunit 3 (.1)
Lus10040472
[exp]
140 / 1e-34 AT4G34430 694 / 0.0 SWITCH/SUCROSE NONFERMENTING 3D, DNA-binding family protein (.1.2.3.4)
Lus10023583
[exp]
139 / 3e-34 AT4G34430 704 / 0.0 SWITCH/SUCROSE NONFERMENTING 3D, DNA-binding family protein (.1.2.3.4)
Lus10026334
[exp]
127 / 2e-30 AT1G21700 556 / 0.0 SWITCH/sucrose nonfermenting 3C (.1)
Lus10042329
[exp]
123 / 4e-29 AT4G34430 652 / 0.0 SWITCH/SUCROSE NONFERMENTING 3D, DNA-binding family protein (.1.2.3.4)
Lus10029695
[exp]
118 / 1e-27 AT1G21700 666 / 0.0 SWITCH/sucrose nonfermenting 3C (.1)
Lus10042734
[exp]
117 / 4e-27 AT1G21700 736 / 0.0 SWITCH/sucrose nonfermenting 3C (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0123 HTH PF00249 Myb_DNA-binding Myb-like DNA-binding domain
CL0123 PF16495 SWIRM-assoc_1 SWIRM-associated region 1
Representative CDS sequence
>Potri.015G100400.1 pacid=42775089 polypeptide=Potri.015G100400.1.p locus=Potri.015G100400 ID=Potri.015G100400.1.v4.1 annot-version=v4.1
ATGTCCAAAATTATGGAGCCAACAACACACTCCGACCCGAATCTAAACCCGATCCGACCAAACGAACCAGAGCTCGACCTCTACACCATCCCCAGCTATT
CCAGTTGGTTTTCATGGCATGATATTCACGAGACAGAGAGAGTCGCTTTAAGAGAATTCTTCGATGGGAGCTCAATAACGAGAACTCCAAAAATCTACAA
AGAATACAGAGACTTTATAATCAACAAGTACCGTGAAGATCCTTCTAGAAGGTTAACATTCACGGAGATTCGAAAGTCACTGGTTGGTGACGTTAGTTTG
TTGAATAAAGTTTTTCTGTTTTTGAATAATTGGGGATTGATTAATTTTAGTTGTGAAAAGAATGAGGAAATTGGTTCGGGTTCGGGTAATGTTGATGTTC
GGGTTGAAGATGGGGCTCCGAACGGAGTTCGGATTGTGGAGATGCCTGATAAGTTGAAACCAATTTCGGTGGGGTCGGTGCAAAGTAGCGCAGAGGGTAG
TGGTGGTGGTGGGAGTGGGACTGGGTTGAAGTTGCCGCCTTTGGCGTCCTATTCGGATGTTTTTGGCGAGTTAGTCGGGAAGAAGAAAGAGGTTGTTTGT
GGAAATTGTGGTGGAAGTTGTGATTCCGGCCAATACGAGTATAGTAAGGGTGATTACTTAATCTGTCAAAAATGCTTTAATGATGGAACTTATGGCGAGA
ACAAGTCTAAGGATGATTTCAAGCTTAAGGATAGTGCTGAAAACAATGGTAGCAATGCAGCTGTGTGGACTGAGGAGGAGACTTTGCGTCTTTTAGAATC
TGTTTCGAGGCATGGGAATGACTGGGACCTGGTTGCTCAAAATGTTAAAACCAAGACTAAACTTGATTGTATTTCTAAGCTCATTGAGCTGCCATTTGGG
GATCTTATATTGAGTTCTACATATGGAAAGGGCAATTCTAGTGGACAGATTGGGAGCACAAACAACTCAAAACAAGTTCCTGCAGCTCCATCTGAGCATC
AAGATGACACCAAACATGAAGATCAATTGCATGAGCAGATGAATGCAAATGAGGAGAAGGGAGATGTCATGGATGATGGCCCCCTTTTGAAAAGAAGACG
CATCACTTCTGTTTCAGATGCTGGTGGCTCTCTGATGAAACAGGTAGCTCTCATCTCAACCATGGTTGGCCCAGATATCACAGCTGCTGCAGCTGAGGCT
GCTGTTGCAGCACTTTGTGATGAAACTGCATGTCCAAGAGAGATATTTGATGGTGAGGAGGATTTTCCATCTAATGGGTTTTCTTCTCCCTCCTTCCATT
CCAAGTCTAAGAGAGTTGACGAGGTTGATGCCTCAGAGGTGAAGCAAACACCCACTCAGTCAGTAAACGAGGAGGCATCTGCATGGCAGAATGACATTCC
TCTATCTTTGCGTCTTAGAGCTGCTGTTGCAACAACTCTTGGGGCAGCTGCTGCTCATGCTAAATTACTGGCAGATCAGGAAGACCGAGAAGTTGAGAAT
TTAATGGCAACCATAGTTGAGACACAGTTGAAGAAACTGCACCACAAAATCAAGCACTTTGATGATCTGGAGCTGATAATGGAGAAGGAATACGCTGAAT
TAGATGAACTAACAGAGTCCTTGACCGAGGAGCGGATTGATGTCTTGCAAAGGGCAATTCGTGCAGGCATATCTAAATCAAGGGATCATGCTCCCATAAA
ATTTCACATGTCAAATGTAGTTTGA
AA sequence
>Potri.015G100400.1 pacid=42775089 polypeptide=Potri.015G100400.1.p locus=Potri.015G100400 ID=Potri.015G100400.1.v4.1 annot-version=v4.1
MSKIMEPTTHSDPNLNPIRPNEPELDLYTIPSYSSWFSWHDIHETERVALREFFDGSSITRTPKIYKEYRDFIINKYREDPSRRLTFTEIRKSLVGDVSL
LNKVFLFLNNWGLINFSCEKNEEIGSGSGNVDVRVEDGAPNGVRIVEMPDKLKPISVGSVQSSAEGSGGGGSGTGLKLPPLASYSDVFGELVGKKKEVVC
GNCGGSCDSGQYEYSKGDYLICQKCFNDGTYGENKSKDDFKLKDSAENNGSNAAVWTEEETLRLLESVSRHGNDWDLVAQNVKTKTKLDCISKLIELPFG
DLILSSTYGKGNSSGQIGSTNNSKQVPAAPSEHQDDTKHEDQLHEQMNANEEKGDVMDDGPLLKRRRITSVSDAGGSLMKQVALISTMVGPDITAAAAEA
AVAALCDETACPREIFDGEEDFPSNGFSSPSFHSKSKRVDEVDASEVKQTPTQSVNEEASAWQNDIPLSLRLRAAVATTLGAAAAHAKLLADQEDREVEN
LMATIVETQLKKLHHKIKHFDDLELIMEKEYAELDELTESLTEERIDVLQRAIRAGISKSRDHAPIKFHMSNVV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G47620 CHB1, ATSWI3A SWITCH/sucrose nonfermenting 3... Potri.015G100400
[exp]
0 1
AT2G47820 unknown protein Potri.010G023900
[exp]
2.64 0.8308
AT4G13730 Ypt/Rab-GAP domain of gyp1p su... Potri.017G057100
[exp]
3.87 0.8387
AT5G63840 PSL5, RSW3 RADIAL SWELLING 3, PRIORITY IN... Potri.005G069000
[exp]
6.32 0.8385
AT3G25210 Tetratricopeptide repeat (TPR)... Potri.002G248100
[exp]
9.00 0.8223
AT4G30480 TPR1, AtTPR1 tetratricopeptide repeat 1, Te... Potri.006G178900
[exp]
12.32 0.8339
AT2G33730 P-loop containing nucleoside t... Potri.012G045800
[exp]
13.30 0.8365
AT3G08020 PHD finger family protein (.1) Potri.001G264800
[exp]
17.29 0.8153
AT4G27950 AP2_ERF CRF4 cytokinin response factor 4 (.... Potri.002G167400
[exp]
17.74 0.8118
Potri.013G078001
[exp]
19.18 0.7808
AT4G01280 MYB Homeodomain-like superfamily p... Potri.002G163100
[exp]
22.95 0.8087

Potri.015G100400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.