Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-CLPC.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50920 1507 / 0 CLPC1, CLPC, ATHSP93-V, HSP93-V, DCA1 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) AT3G48870 1425 / 0 ClpC2, ATCLPC, ATHSP93-III, HSP93-III ClpC2, Clp ATPase (.1.2) AT5G51070 738 / 0 SAG15, CLPD, ERD1 SENESCENCE ASSOCIATED GENE 15, EARLY RESPONSIVE TO DEHYDRATION 1, Clp ATPase (.1) AT5G15450 677 / 0 AtCLPB3, APG6, CLPB3, CLPB-P CASEIN LYTIC PROTEINASE B-P, ALBINO AND PALE GREEN 6, casein lytic proteinase B3 (.1) AT2G25140 650 / 0 HSP98.7, CLPB-M, CLPB4 HEAT SHOCK PROTEIN 98.7, CASEIN LYTIC PROTEINASE B-M, casein lytic proteinase B4 (.1) AT1G74310 623 / 0 HOT1, ATHSP101 heat shock protein 101 (.1) AT4G14670 421 / 3e-136 CLPB2 casein lytic proteinase B2 (.1) AT3G45450 311 / 3e-98 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT4G30350 71 / 2e-12 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT5G57710 64 / 5e-10 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G105900 [exp] 1710 / 0 AT5G50920 1505 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Potri.012G112000 [exp] 736 / 0 AT5G51070 1328 / 0.0 SENESCENCE ASSOCIATED GENE 15, EARLY RESPONSIVE TO DEHYDRATION 1, Clp ATPase (.1) Potri.015G110000 [exp] 719 / 0 AT5G51070 1282 / 0.0 SENESCENCE ASSOCIATED GENE 15, EARLY RESPONSIVE TO DEHYDRATION 1, Clp ATPase (.1) Potri.006G262700 [exp] 674 / 0 AT2G25140 1361 / 0.0 HEAT SHOCK PROTEIN 98.7, CASEIN LYTIC PROTEINASE B-M, casein lytic proteinase B4 (.1) Potri.004G124800 [exp] 662 / 0 AT5G15450 1567 / 0.0 CASEIN LYTIC PROTEINASE B-P, ALBINO AND PALE GREEN 6, casein lytic proteinase B3 (.1) Potri.017G090600 [exp] 642 / 0 AT5G15450 1598 / 0.0 CASEIN LYTIC PROTEINASE B-P, ALBINO AND PALE GREEN 6, casein lytic proteinase B3 (.1) Potri.015G057000 [exp] 631 / 0 AT1G74310 1567 / 0.0 heat shock protein 101 (.1) Potri.015G056900 [exp] 628 / 0 AT1G74310 1566 / 0.0 heat shock protein 101 (.1) Potri.005G197400 [exp] 434 / 1e-142 AT5G50920 583 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036017 [exp] 1497 / 0 AT5G50920 1542 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Lus10016723 [exp] 1478 / 0 AT5G50920 1526 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Lus10032544 [exp] 1248 / 0 AT5G50920 1271 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Lus10043197 [exp] 763 / 0 AT5G50920 802 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Lus10043013 [exp] 740 / 0 AT5G51070 1288 / 0.0 SENESCENCE ASSOCIATED GENE 15, EARLY RESPONSIVE TO DEHYDRATION 1, Clp ATPase (.1) Lus10032514 [exp] 740 / 0 AT5G51070 1280 / 0.0 SENESCENCE ASSOCIATED GENE 15, EARLY RESPONSIVE TO DEHYDRATION 1, Clp ATPase (.1) Lus10030705 [exp] 651 / 0 AT5G15450 1619 / 0.0 CASEIN LYTIC PROTEINASE B-P, ALBINO AND PALE GREEN 6, casein lytic proteinase B3 (.1) Lus10041018 [exp] 633 / 0 AT2G25140 1511 / 0.0 HEAT SHOCK PROTEIN 98.7, CASEIN LYTIC PROTEINASE B-M, casein lytic proteinase B4 (.1) Lus10013191 [exp] 625 / 0 AT5G15450 1605 / 0.0 CASEIN LYTIC PROTEINASE B-P, ALBINO AND PALE GREEN 6, casein lytic proteinase B3 (.1) Lus10021159 [exp] 609 / 0 AT1G74310 1421 / 0.0 heat shock protein 101 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00004 [poplar] [flax] AAA ATPase family associated with various cellular activities (AAA) CL0671 [poplar] [flax] AAA_lid PF02151 [poplar] [flax] UVR UvrB/uvrC motif CL0671 [poplar] [flax] PF02861 [poplar] [flax] Clp_N Clp amino terminal domain, pathogenicity island component CL0023 [poplar] [flax] P-loop_NTPase PF07728 [poplar] [flax] AAA_5 AAA domain (dynein-related subfamily) CL0671 [poplar] [flax] AAA_lid PF10431 [poplar] [flax] ClpB_D2-small C-terminal, D2-small domain, of ClpB protein
Representative CDS sequence Show only first row Show all	>Potri.015G105100.5 pacid=42776378 polypeptide=Potri.015G105100.5.p locus=Potri.015G105100 ID=Potri.015G105100.5.v4.1 annot-version=v4.1 ATGGCTAGGCTTCTAGTTCATTCTGCTAATATTCCTGCCGTAGCTCCTTGTCTAAGGCATTGTCAATTTGAAGAATCTAAAAAACGAAGAGATTCCTCTG CCAGAATGATGTCCAGCTCACCATCTCAGGGTTTGGTAATGAGTGGATACTCGGGATTGCGAAGTGCTAACTGTTTAGATACACTGTTGAGACATGGACA ATCTTTCCATTCCAAGGTTGCAATTACAATCTCTCCCAGGCAGCAAAAGGCTAAGCGATTTGTACCTAGAGCTATGTTTGAACGTTTCACAGAAAAAGCA ATCAAAGTAATCATGCTTGCCCAAGAGGAAGCGAGACGGCTTGGTCATAATTTTGTTGGAACAGAACAAATCCTGTTGGGTCTTATTGGTGAAGGGACTG GAATTGCTGCAAAGGTTCTCAAATCCATGGGAATTAATCTTAAAGATGCACGTGTAGAAGTAGAGAAGATTATTGGGAGGGGCAGTGGATTTGTTGCTGT GGAAATTCCATTCACTCCTCGTGCCAAGCGTGTCCTGGAACTATCATTGGAGGAAGCTCGCCAACTTGGTCATAACTACATTGGATCTGAGCACTTACTT CTCGGGCTACTTCGTGAAGGTGAGGGTGTAGCAGCCCGTGTTCTTGAGAATTTAGGCGCTGATCCTAGTAACATCCGAACTCAGGTCATTCGCATGGTGG GCGAGAGCACGGAGAACCTGGCTGGATCCACTGTTGGACCTGGAAGCAGTAACAACAAGATGCCTACACTTGAGGAATATGGAACTAATCTGACTAAGCT AGCAGAGGAGGGTAAATTGGATCCTGTTGTCGGTAGGCAGCCACAAATAGAACGTGTCATCCAAATCTTGGGCCGAAGAACTAAGAACAACCCTTGTCTT ATTGGAGAACCAGGGGTTGGAAAAACAGCAATTGCTGAAGGTCTTGCTCAGAGGATAGCAAGTGGTGATGTTCCTGAGACAATTGAGGGAAAGAAGGTTA TCACCCTTGATATGGGCCTTCTTGTTGCTGGAACTAAATACCGTGGAGAGTTTGAGGAAAGATTAAAGAAGCTAATGGAGGAAATCAAGCAGAGTGATGA AATAATGCTCTTTATCGATGAGGTGCATACCCTGATAGGGGCAGGAGCTGCAGAAGGAGCTATTGATGCTGCTAATATCTTGAAACCAGCTCTTGCAAGA GGTGAATTGCAGTGTATTGGAGCTACAACCCTAGATGAATACAGAAAGCACATTGAGAAGGACCCTGCTTTAGAAAGACGTTTCCAGCCAGTCAAAGTAC CTGAGCCATCTGTAGATGAAACGATACAGATTTTGAAAGGACTTCGTGAGCGATATGAGATCCACCACAAGCTCCGTTACACAGATGAGTCCTTAGTAGC TGCTGCTCAGTTGTCATACCAGTACATCAGTGACCGTTTTCTGCCTGATAAGGCAATTGATTTGATTGATGAAGCTGGTTCTCGGGTTCGGCTTCGTCAT GCACAGGTCCCCGAGGAAGCAAGAGAGCTTGAGAAAGAGGTCAGACAAATCACAAAGGAAAAGGATGAAGCTGTCCGTGGCCAAGACTTTGAAAAGGCTG GGGAATTGCGAGACAGAGAAATGGACCTTAGAGCACAGATTGCAGCTATTGTGGAGAAAGGCAAAGAGATGAGCAAAGCTGAGACAGAGGCAGGGGATGT AGGTCCCACTGTCACTGAATCAGACATTCAGCACATTGTTTCTTCTTGGACTGGAATTCCAGTAGAGAAAGTATCCACAGACGAATCTGACCGTCTCCTA AAGATGGAAGATACCCTTCACAAGCGAGTCGTTGGCCAGGATGAAGCTGTCAAGGCAATCAGCCGTGCCATCCGCCGAGCTCGTGTTGGACTCAAGAATC CCAATCGACCAATTGCTAGCTTCATATTTTCTGGTCCAACTGGTGTCGGGAAGTCAGAATTGGCAAAAGCACTAGCTGCCTATTACTTTGGCTCTGAAGA AGCCATGATCCGTCTTGATATGAGTGAGTACATGGAAAGACACACTGTTGCTAAGCTGATTGGTTCGCCTCCTGGTTATGTTGGTTACACTGAGGGTGGT CAGTTGACGGAGGCTGTTAGGCGTCGCCCTTACACTGTGGTACTCTTTGATGAGATTGAGAAGGCCCATCCTGATGTCTTTAACATTATGCTTCAAATTC TTGAAGATGGAAGGTTGACAGACAGCAAGGGCAGGACTGTAGACTTCAAAAACACCCTCCTGATAATGACTTCAAATGTTGGTAGCAGTGTTATTGAGAA GGGAGGACGCAAGATTGGATTTGATCTTGATTATGATGAGAAGGATAGCAGTTACAATCGGATTAAGAGCCTGGTGACAGAGGAGTTAAAGCAGTATTTT AGGCCGGAATTCTTAAATAGATTGGATGAGATGATTGTTTTCCGTCAACTTACCAAGCTGGAGGTCAAGGATATTGCTGATATAATGTTGAAGGAGGTCT TTGAGAGGTTGAAGGCCAAGGAAATAGAGCTTCAAGTGACAGAGAGATTTAGAGATAGGGTGGTAGATGAAGGGTATAACCCAGCCTATGGTGCAAGGCC TTTGAGAAGAGCTATAATGAGGCTTCTCGAGGACAGCATGGCTGAGAAAATGCTTTCAGCAGAGATCAAAGAAGGTGATTCTGTTATTATAGATGTTGAT TCTGATGGGAATGTTATTGTTCTCAATGGTCAAAGTGGTGGTGCTCCCGACGCCTTGCCGGATGTGTTGAATGTTGCGTAG
AA sequence Show only first row Show all	>Potri.015G105100.5 pacid=42776378 polypeptide=Potri.015G105100.5.p locus=Potri.015G105100 ID=Potri.015G105100.5.v4.1 annot-version=v4.1 MARLLVHSANIPAVAPCLRHCQFEESKKRRDSSARMMSSSPSQGLVMSGYSGLRSANCLDTLLRHGQSFHSKVAITISPRQQKAKRFVPRAMFERFTEKA IKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLL LGLLREGEGVAARVLENLGADPSNIRTQVIRMVGESTENLAGSTVGPGSSNNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVIQILGRRTKNNPCL IGEPGVGKTAIAEGLAQRIASGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIMLFIDEVHTLIGAGAAEGAIDAANILKPALAR GELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDESLVAAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRH AQVPEEARELEKEVRQITKEKDEAVRGQDFEKAGELRDREMDLRAQIAAIVEKGKEMSKAETEAGDVGPTVTESDIQHIVSSWTGIPVEKVSTDESDRLL KMEDTLHKRVVGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEYMERHTVAKLIGSPPGYVGYTEGG QLTEAVRRRPYTVVLFDEIEKAHPDVFNIMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRKIGFDLDYDEKDSSYNRIKSLVTEELKQYF RPEFLNRLDEMIVFRQLTKLEVKDIADIMLKEVFERLKAKEIELQVTERFRDRVVDEGYNPAYGARPLRRAIMRLLEDSMAEKMLSAEIKEGDSVIIDVD SDGNVIVLNGQSGGAPDALPDVLNVA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G50920		CLPC1, CLPC, AT...	HEAT SHOCK PROTEIN 93-V, DE-RE...		Potri.015G105100 [exp]	0	1	Pt-CLPC.2
AT2G04842		EMB2761	EMBRYO DEFECTIVE 2761, threony...		Potri.014G162200 [exp]	2.00	0.9753
AT1G21640		ATNADK2, NADK2,...	NAD kinase 2 (.1.2)		Potri.002G078700 [exp]	2.44	0.9704	NADK2.2
AT3G19170		ATPREP1, ATZNMP	presequence protease 1 (.1.2)		Potri.004G142300 [exp]	2.44	0.9716
AT1G54570			Esterase/lipase/thioesterase f...		Potri.013G033300 [exp]	3.46	0.9691
AT4G13250		NYC1, NYC	NON-YELLOW COLORING 1, NAD(P)-...		Potri.018G081200 [exp]	3.87	0.9646
AT4G25450		ABCB28, ATNAP8	ARABIDOPSIS THALIANA NON-INTRI...		Potri.015G136700 [exp]	3.87	0.9554	Pt-NAP8.1
AT1G55850		ATCSLE1	cellulose synthase like E1 (.1...		Potri.006G004300 [exp]	5.09	0.9576
AT3G27925		DEGP, DegP1, DE...	DegP protease 1 (.1)		Potri.001G348800 [exp]	5.29	0.9623
AT4G24120		ATYSL1, YSL1	YELLOW STRIPE like 1 (.1)		Potri.001G084400 [exp]	6.32	0.9605
AT1G69830		ATAMY3, AMY3	alpha-amylase-like 3 (.1)		Potri.010G092900 [exp]	6.32	0.9413

Compare expression of checked genes

Potri.015G105100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.